Conservation of cofitness between CCNA_00270 and CCNA_01732 in Caulobacter crescentus NA1000

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Caulobacter crescentus NA1000 1.0 CCNA_00270 Recombination protein recR 1.0 CCNA_01732 DNA repair protein RadA 0.78 9
Caulobacter crescentus NA1000 Δfur 1.00 CCNA_00270 Recombination protein recR 1.00 CCNA_01732 DNA repair protein RadA low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.73 A4249_RS15115 recombination mediator RecR 0.71 A4249_RS03745 DNA repair protein RadA low > 48
Magnetospirillum magneticum AMB-1 0.66 AMB_RS20755 recombination protein RecR 0.55 AMB_RS10555 DNA repair protein RadA low > 64
Azospirillum sp. SherDot2 0.65 MPMX19_02195 Recombination protein RecR 0.56 MPMX19_00904 DNA repair protein RadA low > 112
Azospirillum brasilense Sp245 0.64 AZOBR_RS03880 recombinase RecR 0.55 AZOBR_RS08320 DNA repair protein RadA 0.76 3
Sphingomonas koreensis DSMZ 15582 0.63 Ga0059261_0645 DNA replication and repair protein RecR 0.50 Ga0059261_0751 DNA repair protein RadA 0.33 19
Rhodospirillum rubrum S1H 0.63 Rru_A3471 RecR protein (NCBI) 0.54 Rru_A0406 DNA repair protein RadA (NCBI) — —
Rhodopseudomonas palustris CGA009 0.63 TX73_003195 recombination mediator RecR 0.53 TX73_015980 DNA repair protein RadA — —
Bosea sp. OAE506 0.62 ABIE41_RS04035 recombination mediator RecR 0.54 ABIE41_RS17800 DNA repair protein RadA — —
Sinorhizobium meliloti 1021 0.61 SMc02908 recombination protein RecR 0.56 SMc00556 DNA repair protein RadA 0.62 8
Agrobacterium fabrum C58 0.60 Atu0093 Recombination protein 0.56 Atu1077 DNA repair protein 0.56 5
Phaeobacter inhibens DSM 17395 0.59 PGA1_c30290 recombination protein RecR 0.54 PGA1_c10840 DNA repair protein RadA 0.47 11
Rhizobium sp. OAE497 0.57 ABIE40_RS00300 recombination mediator RecR 0.57 ABIE40_RS06280 DNA repair protein RadA low > 107
Dinoroseobacter shibae DFL-12 0.56 Dshi_0648 recombination protein RecR (RefSeq) 0.55 Dshi_2129 DNA repair protein RadA (RefSeq) 0.44 20
Acinetobacter radioresistens SK82 0.46 MPMX26_01643 Recombination protein RecR 0.43 MPMX26_02235 DNA repair protein RadA low > 36
Dechlorosoma suillum PS 0.42 Dsui_1811 recombination protein RecR 0.43 Dsui_2413 DNA repair protein RadA 0.54 22
Pseudomonas stutzeri RCH2 0.41 Psest_2545 recombination protein RecR 0.42 Psest_3401 DNA repair protein RadA 0.51 11
Fusobacterium nucleatum SB010 0.41 HUW76_08785 recombination protein RecR 0.37 HUW76_02270 DNA repair protein RadA low > 35
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS04980 recombination protein RecR 0.43 CA265_RS22660 DNA repair protein RadA 0.38 31
Pseudomonas sp. RS175 0.40 PFR28_01077 Recombination protein RecR 0.44 PFR28_03792 DNA repair protein RadA low > 88
Bifidobacterium breve UCC2003 0.40 BBR_RS10990 recombination protein RecR 0.36 BBR_RS18740 DNA repair protein RadA low > 34
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_2480 DNA replication and repair protein RecR 0.45 B158DRAFT_0877 DNA replication and repair protein RadA low > 40
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_2325 Recombination protein RecR 0.43 Pf6N2E2_5076 DNA repair protein RadA 0.38 19
Pseudomonas simiae WCS417 0.39 PS417_20800 recombination protein RecR 0.44 PS417_24305 DNA repair protein RadA 0.36 12
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_02495 recombination protein RecR 0.43 AO356_15680 DNA repair protein RadA 0.56 11
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_1987 recombination protein RecR 0.44 Echvi_1031 DNA repair protein RadA 0.59 18
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_00675 recombination protein RecR 0.43 AO353_13980 DNA repair protein RadA 0.39 22
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS18355 recombinase RecR 0.42 HSERO_RS10745 DNA repair protein RadA 0.59 10
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_3864 Recombination protein RecR 0.43 Pf1N1B4_2768 DNA repair protein RadA 0.29 87
Marinobacter adhaerens HP15 0.39 HP15_1883 recombination protein RecR 0.42 HP15_487 DNA repair protein RadA — —
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS22415 recombination protein RecR 0.44 PFLU_RS26230 DNA repair protein RadA low > 109
Bacteroides thetaiotaomicron VPI-5482 0.39 BT1081 recombination protein recR (NCBI ptt file) 0.45 BT2406 putative DNA repair protein (NCBI ptt file) 0.42 3
Pseudomonas fluorescens SBW25 0.39 PFLU_RS22415 recombination protein RecR 0.44 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_4074 Recombination protein RecR 0.43 PfGW456L13_1442 DNA repair protein RadA 0.37 8
Parabacteroides merdae CL09T00C40 0.39 HMPREF1078_RS07615 recombination mediator RecR 0.44 HMPREF1078_RS08395 DNA repair protein RadA low > 61
Bacteroides stercoris CC31F 0.39 HMPREF1181_RS16455 recombination protein RecR 0.44 HMPREF1181_RS00075 DNA repair protein RadA low > 56
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS14870 recombination protein RecR 0.44 ABI39_RS10420 DNA repair protein RadA low > 72
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS18560 recombination protein RecR 0.44 HMPREF1058_RS14715 DNA repair protein RadA low > 67
Shewanella loihica PV-4 0.39 Shew_2233 recombination protein RecR (RefSeq) 0.29 Shew_2807 DNA repair protein RadA (RefSeq) 0.44 11
Variovorax sp. SCN45 0.38 GFF1110 Recombination protein RecR 0.43 GFF5087 DNA repair protein RadA low > 127
Pseudomonas sp. S08-1 0.38 OH686_02385 recombination protein RecR 0.43 OH686_16185 DNA repair protein RadA low > 80
Synechococcus elongatus PCC 7942 0.38 Synpcc7942_1369 recR recombination protein RecR 0.40 Synpcc7942_1452 radA DNA repair protein RadA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_3396 DNA replication and repair protein RecR 0.44 Psyr_4275 DNA replication and repair protein RadA low > 86
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_3396 DNA replication and repair protein RecR 0.44 Psyr_4275 DNA replication and repair protein RadA low > 86
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_01105 recombination protein RecR 0.42 CA264_17125 DNA repair protein RadA 0.53 15
Shewanella amazonensis SB2B 0.38 Sama_1312 recR recombination protein RecR (RefSeq) 0.42 Sama_0981 DNA repair protein RadA (RefSeq) 0.58 11
Alteromonas macleodii MIT1002 0.38 MIT1002_02649 Recombination protein RecR 0.42 MIT1002_02706 Lon protease 2 low > 70
Pseudomonas putida KT2440 0.38 PP_4267 Recombination protein RecR 0.43 PP_4644 DNA repair enzyme low > 96
Mucilaginibacter yixingensis YX-36 DSM 26809 0.38 ABZR88_RS10695 recombination mediator RecR 0.44 ABZR88_RS20495 DNA repair protein RadA low > 71
Variovorax sp. OAS795 0.38 ABID97_RS14700 recombination mediator RecR 0.42 ABID97_RS03770 DNA repair protein RadA low > 91
Desulfovibrio vulgaris Miyazaki F 0.38 DvMF_2271 recombination protein RecR (RefSeq) 0.37 DvMF_0471 DNA repair protein RadA (RefSeq) low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF4253 Recombination protein RecR 0.40 GFF1833 DNA repair protein RadA low > 90
Shewanella sp. ANA-3 0.38 Shewana3_2444 recR recombination protein RecR (RefSeq) 0.44 Shewana3_1049 DNA repair protein RadA (RefSeq) low > 73
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS10810 recombination mediator RecR 0.43 ABZR87_RS11670 DNA repair protein RadA low > 80
Paraburkholderia graminis OAS925 0.37 ABIE53_002048 recombination protein RecR 0.43 ABIE53_002526 DNA repair protein RadA/Sms low > 113
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_00834 DNA replication and repair protein RecR 0.43 H281DRAFT_00590 DNA replication and repair protein RadA low > 103
Shewanella oneidensis MR-1 0.37 SO2015 recR recombination protein RecR (NCBI ptt file) 0.43 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.63 7
Mycobacterium tuberculosis H37Rv 0.37 Rv3715c Probable recombination protein RecR 0.37 Rv3585 DNA repair protein RadA (DNA repair protein SMS) low > 58
Pectobacterium carotovorum WPP14 0.37 HER17_RS15695 recombination mediator RecR 0.42 HER17_RS19085 DNA repair protein RadA low > 75
Lysobacter sp. OAE881 0.37 ABIE51_RS14010 recombination mediator RecR 0.44 ABIE51_RS07685 DNA repair protein RadA low > 62
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS22285 recombination mediator RecR 0.43 QEN71_RS06320 DNA repair protein RadA low > 153
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS09070 recombination protein RecR 0.43 BPHYT_RS12235 DNA repair protein RadA 0.22 13
Rahnella sp. WP5 0.36 EX31_RS22525 recombination protein RecR 0.45 EX31_RS04030 DNA repair protein RadA low > 89
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS06235 recombination mediator RecR 0.44 ABZR86_RS08845 DNA repair protein RadA 0.41 22
Escherichia coli ECRC101 0.36 MCAODC_27380 recR recombination mediator RecR 0.44 MCAODC_01710 radA DNA repair protein RadA — —
Escherichia coli ECRC62 0.36 BNILDI_22505 recR recombination mediator RecR 0.44 BNILDI_08075 radA DNA repair protein RadA — —
Escherichia coli ECRC102 0.36 NIAGMN_06210 recR recombination mediator RecR 0.44 NIAGMN_09045 radA DNA repair protein RadA — —
Escherichia coli ECRC99 0.36 KEDOAH_19810 recR recombination mediator RecR 0.44 KEDOAH_16960 radA DNA repair protein RadA — —
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_05655 recR recombination mediator RecR 0.45 OKGIIK_09580 radA DNA repair protein RadA low > 52
Escherichia fergusonii Becca 0.36 EFB2_03586 Recombination protein RecR 0.44 EFB2_04057 DNA repair protein RadA low > 86
Escherichia coli Nissle 1917 0.36 ECOLIN_RS02805 recombination mediator RecR 0.44 ECOLIN_RS25190 DNA repair protein RadA — —
Escherichia coli BW25113 0.36 b0472 recR recombination protein RecR (NCBI) 0.44 b4389 radA predicted repair protein (NCBI) 0.55 11
Dickeya dadantii 3937 0.36 DDA3937_RS05790 recombination protein RecR 0.42 DDA3937_RS02420 DNA repair protein RadA low > 74
Escherichia coli ECOR27 0.36 NOLOHH_01085 recR recombination mediator RecR 0.44 NOLOHH_03520 radA DNA repair protein RadA low > 57
Escherichia coli ECRC98 0.36 JDDGAC_11805 recR recombination mediator RecR 0.44 JDDGAC_14790 radA DNA repair protein RadA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_03202 Recombination protein RecR 0.44 OHPLBJKB_03672 DNA repair protein RadA low > 73
Escherichia coli ECRC101 0.36 OKFHMN_08155 recR recombination mediator RecR 0.44 OKFHMN_11195 radA DNA repair protein RadA — —
Escherichia coli ECOR38 0.36 HEPCGN_06770 recR recombination mediator RecR 0.44 HEPCGN_09195 radA DNA repair protein RadA low > 85
Escherichia coli BL21 0.36 ECD_00423 gap repair protein 0.44 ECD_04265 DNA repair protein 0.65 14
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS13270 recombination protein RecR 0.43 RR42_RS12030 DNA repair protein RadA — —
Ralstonia solanacearum UW163 0.36 UW163_RS12640 recombination protein RecR 0.43 UW163_RS13540 DNA repair protein RadA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF4390 Recombination protein RecR 0.44 GFF1057 DNA repair protein RadA low > 78
Rhodanobacter denitrificans MT42 0.36 LRK55_RS01020 recombination mediator RecR 0.45 LRK55_RS02280 DNA repair protein RadA low > 63
Klebsiella michiganensis M5al 0.36 BWI76_RS06830 recombination protein RecR 0.44 BWI76_RS04165 DNA repair protein RadA low > 92
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS15170 recombination protein RecR 0.43 RALBFv3_RS00210 DNA repair protein RadA low > 76
Ralstonia solanacearum GMI1000 0.35 RS_RS05980 recombination protein RecR 0.42 RS_RS06880 DNA repair protein RadA low > 80
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS01250 recombination mediator RecR 0.45 LRK54_RS02525 DNA repair protein RadA low > 59
Desulfovibrio vulgaris Hildenborough JW710 0.35 DVU3200 recR recombination protein RecR (TIGR) 0.40 DVU1590 radA DNA repair protein RadA (TIGR) low > 55
Ralstonia solanacearum PSI07 0.35 RPSI07_RS18205 recombination protein RecR 0.43 RPSI07_RS17270 DNA repair protein RadA low > 81
Enterobacter sp. TBS_079 0.35 MPMX20_01074 Recombination protein RecR 0.44 MPMX20_00694 DNA repair protein RadA low > 85
Dickeya dianthicola 67-19 0.35 HGI48_RS05840 recombination protein RecR 0.42 HGI48_RS02380 DNA repair protein RadA — —
Dickeya dianthicola ME23 0.35 DZA65_RS06165 recombination protein RecR 0.42 DZA65_RS02485 DNA repair protein RadA low > 75
Enterobacter asburiae PDN3 0.35 EX28DRAFT_2485 DNA replication and repair protein RecR 0.44 EX28DRAFT_3597 DNA repair protein RadA low > 76
Castellaniella sp019104865 MT123 0.35 ABCV34_RS15480 recombination mediator RecR 0.43 ABCV34_RS02345 DNA repair protein RadA low > 48
Serratia liquefaciens MT49 0.35 IAI46_05240 recombination protein RecR 0.43 IAI46_02945 DNA repair protein RadA low > 86
Erwinia tracheiphila SCR3 0.35 LU632_RS18105 recR recombination mediator RecR 0.44 LU632_RS02550 radA DNA repair protein RadA low > 74
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_05375 recombination protein RecR 0.41 CSW01_11870 DNA repair protein RadA low > 62
Acidovorax sp. GW101-3H11 0.34 Ac3H11_473 Recombination protein RecR 0.41 Ac3H11_3371 DNA repair protein RadA 0.61 3
Pantoea sp. MT58 0.34 IAI47_14465 recombination protein RecR 0.44 IAI47_16345 DNA repair protein RadA low > 76
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.4012.1 Recombination protein RecR 0.45 Xcc-8004.3812.1 DNA repair protein RadA low > 74

Not shown: 0 genomes with orthologs for CCNA_00270 only; 1 genomes with orthologs for CCNA_01732 only