Conservation of cofitness between BPHYT_RS06405 and BPHYT_RS16835 in Burkholderia phytofirmans PsJN

101 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS06405 phosphoribosylamine--glycine ligase 1.0 BPHYT_RS16835 glyceraldehyde-3-phosphate dehydrogenase 0.81 16
Paraburkholderia graminis OAS925 0.98 ABIE53_001545 phosphoribosylamine--glycine ligase 0.99 ABIE53_003536 glyceraldehyde 3-phosphate dehydrogenase
Paraburkholderia bryophila 376MFSha3.1 0.98 H281DRAFT_04521 phosphoribosylamine--glycine ligase 0.99 H281DRAFT_06315 glyceraldehyde-3-phosphate dehydrogenase (NAD+)
Paraburkholderia sabiae LMG 24235 0.92 QEN71_RS24400 phosphoribosylamine--glycine ligase 0.96 QEN71_RS27005 type I glyceraldehyde-3-phosphate dehydrogenase 0.53 114
Herbaspirillum seropedicae SmR1 0.80 HSERO_RS17755 phosphoribosylamine--glycine ligase 0.89 HSERO_RS07125 glyceraldehyde-3-phosphate dehydrogenase
Ralstonia solanacearum GMI1000 0.78 RS_RS10995 phosphoribosylamine--glycine ligase 0.49 RS_RS13755 aldehyde dehydrogenase
Ralstonia sp. UNC404CL21Col 0.78 ABZR87_RS15410 phosphoribosylamine--glycine ligase 0.49 ABZR87_RS01435 type I glyceraldehyde-3-phosphate dehydrogenase
Ralstonia solanacearum PSI07 0.77 RPSI07_RS13680 phosphoribosylamine--glycine ligase 0.49 RPSI07_RS11435 type I glyceraldehyde-3-phosphate dehydrogenase
Ralstonia solanacearum UW163 0.76 UW163_RS10125 phosphoribosylamine--glycine ligase 0.49 UW163_RS07760 type I glyceraldehyde-3-phosphate dehydrogenase
Ralstonia solanacearum IBSBF1503 0.76 RALBFv3_RS03545 phosphoribosylamine--glycine ligase 0.49 RALBFv3_RS05865 type I glyceraldehyde-3-phosphate dehydrogenase
Cupriavidus basilensis FW507-4G11 0.74 RR42_RS04730 phosphoribosylamine--glycine ligase 0.48 RR42_RS17570 glyceraldehyde-3-phosphate dehydrogenase
Dechlorosoma suillum PS 0.73 Dsui_1596 phosphoribosylamine--glycine ligase 0.58 Dsui_1560 glyceraldehyde-3-phosphate dehydrogenase, type I
Variovorax sp. SCN45 0.72 GFF302 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.49 GFF7175 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Variovorax sp. OAS795 0.70 ABID97_RS16735 phosphoribosylamine--glycine ligase 0.49 ABID97_RS02440 type I glyceraldehyde-3-phosphate dehydrogenase
Acidovorax sp. GW101-3H11 0.68 Ac3H11_2421 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.46 Ac3H11_648 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Castellaniella sp019104865 MT123 0.68 ABCV34_RS02550 phosphoribosylamine--glycine ligase 0.87 ABCV34_RS15455 type I glyceraldehyde-3-phosphate dehydrogenase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF4524 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.43 GFF1114 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_04044 Phosphoribosylamine--glycine ligase 0.55 OHPLBJKB_00789 D-erythrose-4-phosphate dehydrogenase low > 73
Escherichia fergusonii Becca 0.60 EFB2_04605 Phosphoribosylamine--glycine ligase 0.54 EFB2_00979 D-erythrose-4-phosphate dehydrogenase low > 86
Escherichia coli BL21 0.60 ECD_03882 phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase 0.55 ECD_02758 D-erythrose 4-phosphate dehydrogenase low > 61
Escherichia coli Nissle 1917 0.60 ECOLIN_RS23095 phosphoribosylamine--glycine ligase 0.55 ECOLIN_RS16265 erythrose-4-phosphate dehydrogenase low > 55
Pantoea sp. MT58 0.59 IAI47_18045 phosphoribosylamine--glycine ligase 0.55 IAI47_03685 erythrose-4-phosphate dehydrogenase low > 76
Escherichia coli ECRC62 0.59 BNILDI_06060 purD Phosphoribosylamine--glycine ligase 0.55 BNILDI_09835 epd erythrose-4-phosphate dehydrogenase low > 75
Escherichia coli ECOR27 0.59 NOLOHH_05460 purD Phosphoribosylamine--glycine ligase 0.55 NOLOHH_11295 epd erythrose-4-phosphate dehydrogenase low > 75
Pseudomonas putida KT2440 0.59 PP_4823 Phosphoribosylamine--glycine ligase 0.62 PP_1009 glyceraldehyde-3-phosphate dehydrogenase
Escherichia coli ECRC101 0.59 MCAODC_03815 purD Phosphoribosylamine--glycine ligase 0.55 MCAODC_09905 epd erythrose-4-phosphate dehydrogenase low > 87
Escherichia coli ECOR38 0.59 HEPCGN_11955 purD Phosphoribosylamine--glycine ligase 0.54 HEPCGN_18695 epd erythrose-4-phosphate dehydrogenase low > 87
Escherichia coli ECRC98 0.59 JDDGAC_16940 purD Phosphoribosylamine--glycine ligase 0.55 JDDGAC_23015 epd erythrose-4-phosphate dehydrogenase low > 86
Escherichia coli ECRC102 0.59 NIAGMN_11065 purD Phosphoribosylamine--glycine ligase 0.55 NIAGMN_17150 epd erythrose-4-phosphate dehydrogenase
Escherichia coli ECRC100 0.59 OKFHMN_13315 purD Phosphoribosylamine--glycine ligase 0.55 OKFHMN_19385 epd erythrose-4-phosphate dehydrogenase low > 80
Escherichia coli ECRC99 0.59 KEDOAH_14845 purD Phosphoribosylamine--glycine ligase 0.55 KEDOAH_08755 epd erythrose-4-phosphate dehydrogenase
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4187 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.55 GFF3022 D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) low > 78
Kangiella aquimarina DSM 16071 0.59 B158DRAFT_0167 phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.67 B158DRAFT_0511 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (EC 1.2.1.12)
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_3520 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.65 Pf6N2E2_2899 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Escherichia coli BW25113 0.59 b4005 purD phosphoribosylamine--glycine ligase (NCBI) 0.55 b2927 epd D-erythrose 4-phosphate dehydrogenase (NCBI) low > 76
Klebsiella michiganensis M5al 0.59 BWI76_RS01610 phosphoribosylamine--glycine ligase 0.54 BWI76_RS23985 erythrose-4-phosphate dehydrogenase low > 92
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_1316 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.66 Pf1N1B4_602 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Pseudomonas sp. RS175 0.59 PFR28_05213 Phosphoribosylamine--glycine ligase 0.65 PFR28_00560 Glyceraldehyde-3-phosphate dehydrogenase 1
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS03010 phosphoribosylamine--glycine ligase 0.66 PFLU_RS24335 type I glyceraldehyde-3-phosphate dehydrogenase
Enterobacter sp. TBS_079 0.58 MPMX20_00225 Phosphoribosylamine--glycine ligase 0.53 MPMX20_03779 D-erythrose-4-phosphate dehydrogenase low > 85
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_08230 phosphoribosylamine--glycine ligase 0.65 AO356_05225 glyceraldehyde-3-phosphate dehydrogenase
Pseudomonas fluorescens SBW25 0.58 PFLU_RS03010 phosphoribosylamine--glycine ligase 0.66 PFLU_RS24335 type I glyceraldehyde-3-phosphate dehydrogenase
Erwinia tracheiphila SCR3 0.58 LU632_RS01015 purD phosphoribosylamine--glycine ligase 0.52 LU632_RS05535 epd erythrose-4-phosphate dehydrogenase low > 74
Pseudomonas sp. S08-1 0.58 OH686_07625 Phosphoribosylamine--glycine ligase 0.51 OH686_10765 erythrose-4-phosphate dehydrogenase
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_58 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.65 PfGW456L13_1888 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Acinetobacter radioresistens SK82 0.58 MPMX26_01140 Phosphoribosylamine--glycine ligase 0.50 MPMX26_01087 D-erythrose-4-phosphate dehydrogenase low > 36
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_01415 phosphoribosylamine--glycine ligase 0.50 CSW01_02530 D-erythrose-4-phosphate dehydrogenase low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_4407 phosphoribosylamine--glycine ligase 0.67 Psyr_1108 glyceraldehyde-3-phosphate dehydrogenase
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_4407 phosphoribosylamine--glycine ligase 0.67 Psyr_1108 glyceraldehyde-3-phosphate dehydrogenase low > 86
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_13645 phosphoribosylamine--glycine ligase 0.65 AO353_03425 glyceraldehyde-3-phosphate dehydrogenase
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4544 phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.53 EX28DRAFT_2973 erythrose-4-phosphate dehydrogenase 0.54 9
Xanthomonas campestris pv. campestris strain 8004 0.58 Xcc-8004.657.1 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.47 Xcc-8004.1236.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) low > 74
Dickeya dadantii 3937 0.58 DDA3937_RS01215 phosphoribosylamine--glycine ligase 0.51 DDA3937_RS18520 erythrose-4-phosphate dehydrogenase low > 74
Pseudomonas stutzeri RCH2 0.58 Psest_1013 phosphoribosylamine--glycine ligase 0.53 Psest_3784 glyceraldehyde-3-phosphate dehydrogenase, type I low > 67
Marinobacter adhaerens HP15 0.58 HP15_3228 phosphoribosylamine-glycine ligase 0.65 HP15_2175 glyceraldehyde-3-phosphate dehydrogenase, type I
Dickeya dianthicola ME23 0.57 DZA65_RS01255 phosphoribosylamine--glycine ligase 0.51 DZA65_RS19580 erythrose-4-phosphate dehydrogenase low > 75
Pseudomonas simiae WCS417 0.57 PS417_02935 phosphoribosylamine--glycine ligase 0.66 PS417_22695 glyceraldehyde-3-phosphate dehydrogenase
Dickeya dianthicola 67-19 0.57 HGI48_RS01210 phosphoribosylamine--glycine ligase 0.51 HGI48_RS18445 erythrose-4-phosphate dehydrogenase low > 71
Lysobacter sp. OAE881 0.57 ABIE51_RS17770 phosphoribosylamine--glycine ligase 0.47 ABIE51_RS17095 type I glyceraldehyde-3-phosphate dehydrogenase low > 62
Rahnella sp. WP5 0.57 EX31_RS16855 phosphoribosylamine--glycine ligase 0.52 EX31_RS21405 erythrose-4-phosphate dehydrogenase low > 89
Pectobacterium carotovorum WPP14 0.57 HER17_RS20340 phosphoribosylamine--glycine ligase 0.52 HER17_RS02685 erythrose-4-phosphate dehydrogenase low > 75
Alteromonas macleodii MIT1002 0.56 MIT1002_03961 Phosphoribosylamine--glycine ligase 0.51 MIT1002_00862 D-erythrose-4-phosphate dehydrogenase
Serratia liquefaciens MT49 0.56 IAI46_01360 phosphoribosylamine--glycine ligase 0.53 IAI46_21015 erythrose-4-phosphate dehydrogenase low > 86
Shewanella amazonensis SB2B 0.56 Sama_0394 phosphoribosylamine--glycine ligase (RefSeq) 0.71 Sama_1808 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (RefSeq)
Shewanella sp. ANA-3 0.55 Shewana3_0440 phosphoribosylamine--glycine ligase (RefSeq) 0.72 Shewana3_2124 glyceraldehyde-3-phosphate dehydrogenase (RefSeq)
Shewanella oneidensis MR-1 0.54 SO0441 purD phosphoribosylamine--glycine ligase (NCBI ptt file) 0.71 SO2345 gapA-2 glyceraldehyde 3-phosphate dehydrogenase (NCBI ptt file)
Shewanella loihica PV-4 0.53 Shew_3413 phosphoribosylamine--glycine ligase (RefSeq) 0.71 Shew_2002 glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq)
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS13850 phosphoribosylamine--glycine ligase 0.76 ABZR86_RS18615 type I glyceraldehyde-3-phosphate dehydrogenase low > 74
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_13750 purD phosphoribosylamine--glycine ligase 0.47 OKGIIK_01060 gap type I glyceraldehyde-3-phosphate dehydrogenase 0.79 2
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS10165 phosphoribosylamine--glycine ligase 0.49 LRK54_RS05785 type I glyceraldehyde-3-phosphate dehydrogenase low > 59
Rhodanobacter denitrificans MT42 0.51 LRK55_RS09805 phosphoribosylamine--glycine ligase 0.49 LRK55_RS05540 type I glyceraldehyde-3-phosphate dehydrogenase low > 63
Agrobacterium fabrum C58 0.48 Atu0647 phosphoribosylamine--glycine ligase 0.61 Atu3737 glyceraldehyde 3-phosphate dehydrogenase
Bosea sp. OAE506 0.47 ABIE41_RS23160 phosphoribosylamine--glycine ligase 0.58 ABIE41_RS09420 type I glyceraldehyde-3-phosphate dehydrogenase
Rhizobium sp. OAE497 0.47 ABIE40_RS05430 phosphoribosylamine--glycine ligase 0.60 ABIE40_RS15870 type I glyceraldehyde-3-phosphate dehydrogenase
Azospirillum sp. SherDot2 0.47 MPMX19_01630 Phosphoribosylamine--glycine ligase 0.59 MPMX19_02850 Glyceraldehyde-3-phosphate dehydrogenase 1 low > 112
Rhodopseudomonas palustris CGA009 0.46 TX73_005965 phosphoribosylamine--glycine ligase 0.61 TX73_004865 type I glyceraldehyde-3-phosphate dehydrogenase
Azospirillum brasilense Sp245 0.46 AZOBR_RS04470 phosphoribosylamine--glycine ligase 0.59 AZOBR_RS10375 glyceraldehyde-3-phosphate dehydrogenase
Sinorhizobium meliloti 1021 0.45 SMc00993 phosphoribosylamine--glycine ligase 0.62 SMc03979 glyceraldehyde-3-phosphate dehydrogenase 0.87 59
Desulfovibrio vulgaris Hildenborough JW710 0.44 DVU0488 purD phosphoribosylamine--glycine ligase (TIGR) 0.49 DVU0565 gap-1 glyceraldehyde 3-phosphate dehydrogenase (TIGR) low > 55
Magnetospirillum magneticum AMB-1 0.44 AMB_RS01075 phosphoribosylamine--glycine ligase 0.44 AMB_RS02635 type I glyceraldehyde-3-phosphate dehydrogenase
Desulfovibrio vulgaris Miyazaki F 0.44 DvMF_1722 phosphoribosylamine--glycine ligase (RefSeq) 0.46 DvMF_1440 glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq) low > 51
Rhodospirillum rubrum S1H 0.43 Rru_A0646 Phosphoribosylamine--glycine ligase (NCBI) 0.61 Rru_A0222 Glyceraldehyde-3-phosphate dehydrogenase, type I (NCBI)
Phaeobacter inhibens DSM 17395 0.43 PGA1_c23610 phosphoribosylamine--glycine ligase PurD 0.56 PGA1_c27490 glyceraldehyde-3-phosphate dehydrogenase Gap
Caulobacter crescentus NA1000 0.42 CCNA_00299 phosphoribosylamine--glycine ligase 0.56 CCNA_03358 glyceraldehyde 3-phosphate dehydrogenase
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_00299 phosphoribosylamine--glycine ligase 0.56 CCNA_03358 glyceraldehyde 3-phosphate dehydrogenase low > 67
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS01580 phosphoribosylamine--glycine ligase 0.45 HMPREF1181_RS06145 type I glyceraldehyde-3-phosphate dehydrogenase
Dinoroseobacter shibae DFL-12 0.42 Dshi_2728 phosphoribosylamine--glycine ligase (RefSeq) 0.59 Dshi_1742 glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq)
Bifidobacterium breve UCC2003 0.41 BBR_RS13370 phosphoribosylamine--glycine ligase 0.38 BBR_RS16790 type I glyceraldehyde-3-phosphate dehydrogenase
Synechococcus elongatus PCC 7942 0.41 Synpcc7942_0925 purD phosphoribosylamine--glycine ligase 0.47 Synpcc7942_1742 gap2 glyceraldehyde-3-phosphate dehydrogenase
Bacteroides ovatus ATCC 8483 0.41 BACOVA_01348 phosphoribosylamine--glycine ligase 0.45 BACOVA_05096 glyceraldehyde-3-phosphate dehydrogenase, type I
Echinicola vietnamensis KMM 6221, DSM 17526 0.41 Echvi_0167 phosphoribosylamine--glycine ligase 0.47 Echvi_3029 glyceraldehyde-3-phosphate dehydrogenase, type I
Phocaeicola vulgatus CL09T03C04 0.41 HMPREF1058_RS10995 phosphoribosylamine--glycine ligase 0.45 HMPREF1058_RS06050 type I glyceraldehyde-3-phosphate dehydrogenase
Phocaeicola dorei CL03T12C01 0.40 ABI39_RS06055 phosphoribosylamine--glycine ligase 0.45 ABI39_RS17975 type I glyceraldehyde-3-phosphate dehydrogenase
Bacteroides thetaiotaomicron VPI-5482 0.40 BT3253 phosphoribosylamine--glycine ligase (NCBI ptt file) 0.45 BT4263 glyceraldehyde 3-phosphate dehydrogenase (NCBI ptt file)
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS06805 phosphoribosylamine--glycine ligase 0.45 HMPREF1078_RS15885 type I glyceraldehyde-3-phosphate dehydrogenase
Pontibacter actiniarum KMM 6156, DSM 19842 0.40 CA264_20115 phosphoribosylamine--glycine ligase 0.52 CA264_03770 type I glyceraldehyde-3-phosphate dehydrogenase
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_1441 phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.60 Ga0059261_0730 glyceraldehyde-3-phosphate dehydrogenase, type I
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS09255 phosphoribosylamine--glycine ligase 0.57 A4249_RS10040 type I glyceraldehyde-3-phosphate dehydrogenase
Fusobacterium nucleatum SB010 0.40 HUW76_05205 phosphoribosylamine--glycine ligase 0.54 HUW76_06235 type I glyceraldehyde-3-phosphate dehydrogenase
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS01620 phosphoribosylamine--glycine ligase 0.48 ABZR88_RS12470 type I glyceraldehyde-3-phosphate dehydrogenase
Pedobacter sp. GW460-11-11-14-LB5 0.37 CA265_RS22605 phosphoribosylamine--glycine ligase 0.48 CA265_RS01860 type I glyceraldehyde-3-phosphate dehydrogenase
Mycobacterium tuberculosis H37Rv 0.32 Rv0772 Probable phosphoribosylamine--glycine ligase PurD (GARS) (glycinamide ribonucleotide synthetase) (phosphoribosylglycinamide synthetase) (5'-phosphoribosylglycinamide synthetase) 0.52 Rv1436 Probable glyceraldehyde 3-phosphate dehydrogenase Gap (GAPDH)

Not shown: 2 genomes with orthologs for BPHYT_RS06405 only; 0 genomes with orthologs for BPHYT_RS16835 only