Conservation of cofitness between BBR_RS12310 and BBR_RS20420 in Bifidobacterium breve UCC2003

101 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bifidobacterium breve UCC2003 1.0 BBR_RS12310 signal recognition particle protein 1.0 BBR_RS20420 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.41 19
Mycobacterium tuberculosis H37Rv 0.50 Rv2916c Probable signal recognition particle protein Ffh (fifty-four homolog) (SRP protein) 0.40 Rv1010 Probable dimethyladenosine transferase KsgA (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (high level kasugamycin resistance protein KsgA) (kasugamycin dimethyltransferase)
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS21150 signal recognition particle protein 0.21 ABZR88_RS00050 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Bacteroides stercoris CC31F 0.39 HMPREF1181_RS11300 signal recognition particle protein 0.22 HMPREF1181_RS09125 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Bacteroides thetaiotaomicron VPI-5482 0.39 BT1601 putative signal recognition protein (NCBI ptt file) 0.21 BT4043 dimethyladenosine transferase (NCBI ptt file)
Bacteroides ovatus ATCC 8483 0.39 BACOVA_04343 signal recognition particle protein 0.21 BACOVA_04832 dimethyladenosine transferase
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_07930 signal recognition particle protein 0.21 CA264_03850 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase
Phocaeicola vulgatus CL09T03C04 0.38 HMPREF1058_RS15070 signal recognition particle protein 0.21 HMPREF1058_RS14130 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Phocaeicola dorei CL03T12C01 0.38 ABI39_RS10865 signal recognition particle protein 0.21 ABI39_RS09780 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Desulfovibrio vulgaris Miyazaki F 0.38 DvMF_2888 signal recognition particle protein (RefSeq) 0.19 DvMF_0501 ksgA dimethyladenosine transferase (RefSeq)
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS20420 signal recognition particle protein 0.21 CA265_RS18315 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_3834 signal recognition particle protein 0.17 Echvi_0183 dimethyladenosine transferase
Fusobacterium nucleatum SB010 0.38 HUW76_08185 signal recognition particle protein 0.22 HUW76_02810 ribosomal RNA small subunit methyltransferase A
Shewanella loihica PV-4 0.37 Shew_1062 signal recognition particle protein (RefSeq) 0.24 Shew_0879 ksgA dimethyladenosine transferase (RefSeq)
Shewanella amazonensis SB2B 0.37 Sama_0888 signal recognition particle protein (RefSeq) 0.24 Sama_2819 ksgA dimethyladenosine transferase (RefSeq)
Parabacteroides merdae CL09T00C40 0.37 HMPREF1078_RS14695 signal recognition particle protein 0.20 HMPREF1078_RS04880 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Pectobacterium carotovorum WPP14 0.37 HER17_RS05110 signal recognition particle protein 0.22 HER17_RS02960 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Dechlorosoma suillum PS 0.36 Dsui_1322 signal recognition particle protein 0.21 Dsui_0039 dimethyladenosine transferase
Desulfovibrio vulgaris Hildenborough JW710 0.36 DVU0840 ffh signal recognition particle protein (TIGR) 0.20 DVU1797 ksgA dimethyladenosine transferase (TIGR)
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_2260 signal recognition particle subunit FFH/SRP54 (srp54) 0.27 B158DRAFT_0788 dimethyladenosine transferase
Enterobacter asburiae PDN3 0.36 EX28DRAFT_2713 signal recognition particle subunit FFH/SRP54 (srp54) 0.23 EX28DRAFT_3645 ribosomal RNA small subunit methyltransferase A
Dickeya dadantii 3937 0.36 DDA3937_RS16180 signal recognition particle protein 0.24 DDA3937_RS18265 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Escherichia coli BW25113 0.36 b2610 ffh Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) (NCBI) 0.23 b0051 ksgA dimethyladenosine transferase (NCBI)
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF4168 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) 0.22 GFF190 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182)
Escherichia coli ECRC102 0.36 NIAGMN_18940 ffh signal recognition particle protein 0.23 NIAGMN_08685 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
Klebsiella michiganensis M5al 0.36 BWI76_RS21530 signal recognition particle protein 0.23 BWI76_RS04520 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase
Escherichia coli ECRC62 0.36 BNILDI_11650 ffh signal recognition particle protein 0.23 BNILDI_08425 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_01096 Signal recognition particle protein 0.23 OHPLBJKB_03605 Ribosomal RNA small subunit methyltransferase A
Escherichia coli ECRC98 0.36 JDDGAC_24835 ffh signal recognition particle protein 0.23 JDDGAC_14430 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
Escherichia coli ECOR27 0.36 NOLOHH_12845 ffh signal recognition particle protein 0.23 NOLOHH_03180 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
Dickeya dianthicola 67-19 0.36 HGI48_RS16290 signal recognition particle protein 0.23 HGI48_RS18200 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Escherichia coli ECRC99 0.36 KEDOAH_07050 ffh signal recognition particle protein 0.23 KEDOAH_17320 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
Escherichia coli BL21 0.36 ECD_02499 Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) 0.23 ECD_00055 16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM-dependent
Escherichia coli ECRC101 0.36 MCAODC_11700 ffh signal recognition particle protein 0.23 MCAODC_01350 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
Escherichia coli Nissle 1917 0.36 ECOLIN_RS14750 signal recognition particle protein 0.22 ECOLIN_RS00285 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Escherichia fergusonii Becca 0.36 EFB2_01282 Signal recognition particle protein 0.22 EFB2_03992 Ribosomal RNA small subunit methyltransferase A
Escherichia coli ECRC100 0.36 OKFHMN_21170 ffh signal recognition particle protein 0.23 OKFHMN_10835 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
Acinetobacter radioresistens SK82 0.36 MPMX26_02468 Signal recognition particle protein 0.26 MPMX26_00596 Ribosomal RNA small subunit methyltransferase A
Pseudomonas sp. S08-1 0.36 OH686_17720 signal recognition particle protein 0.24 OH686_15040 ribosomal RNA small subunit methyltransferase A
Escherichia coli ECOR38 0.36 HEPCGN_20290 ffh signal recognition particle protein 0.23 HEPCGN_08825 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
Dickeya dianthicola ME23 0.36 DZA65_RS17385 signal recognition particle protein 0.23 DZA65_RS19340 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Enterobacter sp. TBS_079 0.36 MPMX20_03480 Signal recognition particle protein 0.22 MPMX20_00747 Ribosomal RNA small subunit methyltransferase A
Erwinia tracheiphila SCR3 0.35 LU632_RS15670 ffh signal recognition particle protein 0.24 LU632_RS02730 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Alteromonas macleodii MIT1002 0.35 MIT1002_01296 p48 0.26 MIT1002_00781 Ribosomal RNA small subunit methyltransferase A
Shewanella oneidensis MR-1 0.35 SO1356 ffh signal recognition particle protein Ffh (NCBI ptt file) 0.24 SO3639 ksgA dimethyladenosine transferase (NCBI ptt file)
Pseudomonas stutzeri RCH2 0.35 Psest_3134 signal recognition particle protein 0.22 Psest_3668 dimethyladenosine transferase
Serratia liquefaciens MT49 0.35 IAI46_03915 signal recognition particle protein 0.23 IAI46_03245 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Shewanella sp. ANA-3 0.35 Shewana3_3018 signal recognition particle protein (RefSeq) 0.25 Shewana3_3209 ksgA dimethyladenosine transferase (RefSeq)
Pseudomonas sp. RS175 0.35 PFR28_00326 Signal recognition particle protein 0.24 PFR28_04064 Ribosomal RNA small subunit methyltransferase A
Pantoea sp. MT58 0.35 IAI47_04370 signal recognition particle protein 0.24 IAI47_16085 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_06410 RNA-binding protein 0.25 AO356_14335 rRNA methyltransferase
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_874 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) 0.25 Pf1N1B4_2528 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182)
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS27240 signal recognition particle protein 0.20 QEN71_RS02130 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Magnetospirillum magneticum AMB-1 0.35 AMB_RS20535 signal recognition particle protein 0.23 AMB_RS18820 dimethyladenosine transferase
Rahnella sp. WP5 0.35 EX31_RS07730 signal recognition particle protein 0.22 EX31_RS03780 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_1715 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) 0.25 PfGW456L13_1200 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182)
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_3150 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) 0.25 Pf6N2E2_4805 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182)
Pseudomonas fluorescens SBW25 0.34 PFLU_RS24585 signal recognition particle protein 0.24 PFLU_RS27465 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS24585 signal recognition particle protein 0.24 PFLU_RS27465 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Pseudomonas simiae WCS417 0.34 PS417_22925 RNA-binding protein 0.24 PS417_25810 ribosomal RNA small subunit methyltransferase A
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS17080 signal recognition particle protein 0.19 BPHYT_RS03305 ribosomal RNA small subunit methyltransferase A
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_04390 RNA-binding protein 0.24 AO353_07315 rRNA methyltransferase
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_06270 signal recognition particle subunit FFH/SRP54 (srp54) 0.21 H281DRAFT_04640 dimethyladenosine transferase
Paraburkholderia graminis OAS925 0.34 ABIE53_003582 signal recognition particle subunit SRP54 0.21 ABIE53_000800 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase
Pseudomonas putida KT2440 0.34 PP_1461 GTPase component of the signal recognition particle (SRP) 0.24 PP_0401 Ribosomal RNA small subunit methyltransferase A
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS01850 signal recognition particle protein 0.23 HSERO_RS03540 dimethyladenosine transferase
Castellaniella sp019104865 MT123 0.34 ABCV34_RS09010 signal recognition particle protein 0.22 ABCV34_RS09490 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_1281 signal recognition particle subunit FFH/SRP54 (srp54) 0.24 Psyr_4627 dimethyladenosine transferase
Marinobacter adhaerens HP15 0.34 HP15_757 signal recognition particle protein 0.23 HP15_3278 dimethyladenosine transferase
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_1281 signal recognition particle subunit FFH/SRP54 (srp54) 0.24 Psyr_4627 dimethyladenosine transferase
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_09570 ffh signal recognition particle protein 0.24 OKGIIK_11625 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
Ralstonia solanacearum GMI1000 0.34 RS_RS14055 signal recognition particle protein 0.23 RS_RS02580 ribosomal RNA small subunit methyltransferase A
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS17890 signal recognition particle protein 0.23 RR42_RS02785 dimethyladenosine transferase
Vibrio cholerae E7946 ATCC 55056 0.34 CSW01_02990 signal recognition particle protein 0.24 CSW01_02325 ribosomal RNA small subunit methyltransferase A
Lysobacter sp. OAE881 0.34 ABIE51_RS07735 signal recognition particle protein 0.24 ABIE51_RS05385 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Azospirillum brasilense Sp245 0.34 AZOBR_RS03510 signal recognition particle protein 0.27 AZOBR_RS16340 16S rRNA methyltransferase
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS08830 signal recognition particle protein 0.24 ABZR86_RS11270 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Ralstonia solanacearum PSI07 0.34 RPSI07_RS11135 signal recognition particle protein 0.23 RPSI07_RS21460 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Ralstonia solanacearum UW163 0.33 UW163_RS07520 signal recognition particle protein 0.22 UW163_RS01830 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS06105 signal recognition particle protein 0.22 RALBFv3_RS11755 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS01770 signal recognition particle protein 0.23 ABZR87_RS07710 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Azospirillum sp. SherDot2 0.33 MPMX19_00322 Signal recognition particle protein 0.25 MPMX19_01514 Ribosomal RNA small subunit methyltransferase A
Acidovorax sp. GW101-3H11 0.33 Ac3H11_4015 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) 0.20 Ac3H11_4327 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182)
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.3774.1 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) 0.25 Xcc-8004.4271.1 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS02515 signal recognition particle protein 0.24 LRK54_RS12305 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Bosea sp. OAE506 0.33 ABIE41_RS11730 signal recognition particle protein 0.21 ABIE41_RS17730 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Rhodanobacter denitrificans MT42 0.33 LRK55_RS02270 signal recognition particle protein 0.24 LRK55_RS12040 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_4158 signal recognition particle subunit FFH/SRP54 (srp54) 0.24 Ga0059261_0879 ribosomal RNA small subunit methyltransferase A
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_1771 ffh signal recognition particle subunit FFH/SRP54 (srp54) 0.18 Synpcc7942_0311 ksgA dimethyladenosine transferase
Dinoroseobacter shibae DFL-12 0.32 Dshi_0353 signal recognition particle protein (RefSeq) 0.24 Dshi_1185 dimethyladenosine transferase (RefSeq)
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF599 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) 0.20 GFF2466 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182)
Rhodospirillum rubrum S1H 0.32 Rru_A1184 Signal recognition particle protein (NCBI) 0.23 Rru_A0431 16S rRNA dimethylase (NCBI)
Variovorax sp. SCN45 0.32 GFF4428 Signal recognition particle protein Ffh 0.21 GFF3251 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)
Variovorax sp. OAS795 0.32 ABID97_RS06435 signal recognition particle protein 0.21 ABID97_RS02525 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_03768 signal recognition particle GTPase, SRP 0.22 CCNA_01757 dimethyladenosine transferase low > 67
Caulobacter crescentus NA1000 0.31 CCNA_03768 signal recognition particle GTPase, SRP 0.22 CCNA_01757 dimethyladenosine transferase
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS14850 signal recognition particle protein 0.23 A4249_RS06760 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Rhodopseudomonas palustris CGA009 0.31 TX73_001270 signal recognition particle protein 0.22 TX73_015860 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
Agrobacterium fabrum C58 0.30 Atu2697 signal recognition particle protein 0.21 Atu1103 rRNA-adenine N6,N6-dimethyltransferase
Phaeobacter inhibens DSM 17395 0.30 PGA1_c00630 signal recognition particle protein Ffh 0.20 PGA1_c19860 dimethyladenosine transferase KsgA
Sinorhizobium meliloti 1021 0.29 SMc03857 signal recognition particle protein 0.20 SMc00579 dimethyladenosine transferase
Rhizobium sp. OAE497 0.28 ABIE40_RS18335 signal recognition particle protein 0.22 ABIE40_RS06390 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA

Not shown: 2 genomes with orthologs for BBR_RS12310 only; 0 genomes with orthologs for BBR_RS20420 only