Conservation of cofitness between BBR_RS12310 and BBR_RS13905 in Bifidobacterium breve UCC2003

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bifidobacterium breve UCC2003 1.0 BBR_RS12310 signal recognition particle protein 1.0 BBR_RS13905 ornithine carbamoyltransferase 0.43 6
Mycobacterium tuberculosis H37Rv 0.50 Rv2916c Probable signal recognition particle protein Ffh (fifty-four homolog) (SRP protein) 0.52 Rv1656 Probable ornithine carbamoyltransferase, anabolic ArgF
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS21150 signal recognition particle protein 0.11 ABZR88_RS15495 acetylornithine carbamoyltransferase
Bacteroides ovatus ATCC 8483 0.39 BACOVA_04343 signal recognition particle protein 0.11 BACOVA_03533 N-acetylornithine carbamoyltransferase
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_07930 signal recognition particle protein 0.12 CA264_06240 acetylornithine carbamoyltransferase
Desulfovibrio vulgaris Miyazaki F 0.38 DvMF_2888 signal recognition particle protein (RefSeq) 0.37 DvMF_0046 ornithine carbamoyltransferase (RefSeq)
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS20420 signal recognition particle protein 0.13 CA265_RS18520 acetylornithine carbamoyltransferase
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_3834 signal recognition particle protein 0.14 Echvi_3849 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data)
Shewanella loihica PV-4 0.37 Shew_1062 signal recognition particle protein (RefSeq) 0.36 Shew_0204 ornithine carbamoyltransferase (RefSeq)
Shewanella amazonensis SB2B 0.37 Sama_0888 signal recognition particle protein (RefSeq) 0.34 Sama_0258 ornithine carbamoyltransferase (RefSeq)
Parabacteroides merdae CL09T00C40 0.37 HMPREF1078_RS14695 signal recognition particle protein 0.12 HMPREF1078_RS10660 acetylornithine carbamoyltransferase
Pectobacterium carotovorum WPP14 0.37 HER17_RS05110 signal recognition particle protein 0.33 HER17_RS19500 ornithine carbamoyltransferase
Dechlorosoma suillum PS 0.36 Dsui_1322 signal recognition particle protein 0.39 Dsui_3249 ornithine carbamoyltransferase
Desulfovibrio vulgaris Hildenborough JW710 0.36 DVU0840 ffh signal recognition particle protein (TIGR) 0.36 DVU1096 argF ornithine carbamoyltransferase (TIGR)
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_2260 signal recognition particle subunit FFH/SRP54 (srp54) 0.19 B158DRAFT_1975 Ornithine carbamoyltransferase
Enterobacter asburiae PDN3 0.36 EX28DRAFT_2713 signal recognition particle subunit FFH/SRP54 (srp54) 0.36 EX28DRAFT_3450 ornithine carbamoyltransferase
Dickeya dadantii 3937 0.36 DDA3937_RS16180 signal recognition particle protein 0.33 DDA3937_RS01940 ornithine carbamoyltransferase
Escherichia coli ECRC102 0.36 NIAGMN_18940 ffh signal recognition particle protein 0.34 NIAGMN_09685 argF ornithine carbamoyltransferase
Escherichia fergusonii Becca 0.36 EFB2_01282 Signal recognition particle protein 0.34 EFB2_04281 Ornithine carbamoyltransferase subunit I
Escherichia coli ECRC62 0.36 BNILDI_11650 ffh signal recognition particle protein 0.34 BNILDI_07425 argF ornithine carbamoyltransferase
Escherichia coli ECRC101 0.36 MCAODC_11700 ffh signal recognition particle protein 0.34 MCAODC_02340 argF ornithine carbamoyltransferase
Escherichia coli ECRC100 0.36 OKFHMN_21170 ffh signal recognition particle protein 0.34 OKFHMN_11835 argF ornithine carbamoyltransferase
Escherichia coli BW25113 0.36 b2610 ffh Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) (NCBI) 0.34 b4254 argI ornithine carbamoyltransferase 1 (NCBI)
Escherichia coli ECRC98 0.36 JDDGAC_24835 ffh signal recognition particle protein 0.34 JDDGAC_15475 argF ornithine carbamoyltransferase
Dickeya dianthicola 67-19 0.36 HGI48_RS16290 signal recognition particle protein 0.33 HGI48_RS01915 ornithine carbamoyltransferase
Escherichia coli ECRC99 0.36 KEDOAH_07050 ffh signal recognition particle protein 0.34 KEDOAH_16320 argF ornithine carbamoyltransferase
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_01096 Signal recognition particle protein 0.34 OHPLBJKB_03782 Ornithine carbamoyltransferase subunit I
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF4168 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) 0.35 GFF940 Ornithine carbamoyltransferase (EC 2.1.3.3)
Klebsiella michiganensis M5al 0.36 BWI76_RS21530 signal recognition particle protein 0.34 BWI76_RS03010 ornithine carbamoyltransferase
Escherichia coli Nissle 1917 0.36 ECOLIN_RS14750 signal recognition particle protein 0.34 ECOLIN_RS24665 ornithine carbamoyltransferase
Escherichia coli ECOR27 0.36 NOLOHH_12845 ffh signal recognition particle protein 0.34 NOLOHH_04090 argF ornithine carbamoyltransferase
Escherichia coli BL21 0.36 ECD_02499 Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) 0.34 ECD_04120 ornithine carbamoyltransferase 1
Pseudomonas sp. S08-1 0.36 OH686_17720 signal recognition particle protein 0.37 OH686_20405 ornithine carbamoyltransferase
Escherichia coli ECOR38 0.36 HEPCGN_20290 ffh signal recognition particle protein 0.34 HEPCGN_10025 argF ornithine carbamoyltransferase
Acinetobacter radioresistens SK82 0.36 MPMX26_02468 Signal recognition particle protein 0.41 MPMX26_01287 Ornithine carbamoyltransferase 1, anabolic
Enterobacter sp. TBS_079 0.36 MPMX20_03480 Signal recognition particle protein 0.36 MPMX20_00547 Ornithine carbamoyltransferase
Dickeya dianthicola ME23 0.36 DZA65_RS17385 signal recognition particle protein 0.35 DZA65_RS02035 ornithine carbamoyltransferase
Erwinia tracheiphila SCR3 0.35 LU632_RS15670 ffh signal recognition particle protein 0.32 LU632_RS20900 argF ornithine carbamoyltransferase
Alteromonas macleodii MIT1002 0.35 MIT1002_01296 p48 0.31 MIT1002_00469 Ornithine carbamoyltransferase
Shewanella oneidensis MR-1 0.35 SO1356 ffh signal recognition particle protein Ffh (NCBI ptt file) 0.35 SO0277 argF ornithine carbamoyltransferase (NCBI ptt file)
Serratia liquefaciens MT49 0.35 IAI46_03915 signal recognition particle protein 0.33 IAI46_02320 ornithine carbamoyltransferase
Pseudomonas stutzeri RCH2 0.35 Psest_3134 signal recognition particle protein 0.36 Psest_1291 ornithine carbamoyltransferase
Shewanella sp. ANA-3 0.35 Shewana3_3018 signal recognition particle protein (RefSeq) 0.36 Shewana3_3903 ornithine carbamoyltransferase (RefSeq)
Pseudomonas sp. RS175 0.35 PFR28_00326 Signal recognition particle protein 0.38 PFR28_03363 Ornithine carbamoyltransferase 1, anabolic
Pantoea sp. MT58 0.35 IAI47_04370 signal recognition particle protein 0.35 IAI47_16845 ornithine carbamoyltransferase
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_874 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) 0.39 Pf1N1B4_762 Ornithine carbamoyltransferase (EC 2.1.3.3)
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS27240 signal recognition particle protein 0.40 QEN71_RS02785 ornithine carbamoyltransferase
Magnetospirillum magneticum AMB-1 0.35 AMB_RS20535 signal recognition particle protein 0.40 AMB_RS01610 ornithine carbamoyltransferase
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_06410 RNA-binding protein 0.37 AO356_18275 ornithine carbamoyltransferase
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_3150 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) 0.37 Pf6N2E2_5579 Ornithine carbamoyltransferase (EC 2.1.3.3)
Rahnella sp. WP5 0.35 EX31_RS07730 signal recognition particle protein 0.36 EX31_RS12800 ornithine carbamoyltransferase
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_1715 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) 0.38 PfGW456L13_1739 Ornithine carbamoyltransferase (EC 2.1.3.3)
Pseudomonas fluorescens SBW25 0.34 PFLU_RS24585 signal recognition particle protein 0.40 PFLU_RS05680 ornithine carbamoyltransferase
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS17080 signal recognition particle protein 0.40 BPHYT_RS15915 ornithine carbamoyltransferase
Pseudomonas simiae WCS417 0.34 PS417_22925 RNA-binding protein 0.39 PS417_05595 ornithine carbamoyltransferase
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_04390 RNA-binding protein 0.39 AO353_04155 ornithine carbamoyltransferase
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS24585 signal recognition particle protein 0.40 PFLU_RS05680 ornithine carbamoyltransferase
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_06270 signal recognition particle subunit FFH/SRP54 (srp54) 0.40 H281DRAFT_04119 ornithine carbamoyltransferase
Paraburkholderia graminis OAS925 0.34 ABIE53_003582 signal recognition particle subunit SRP54 0.40 ABIE53_003354 ornithine carbamoyltransferase
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS01850 signal recognition particle protein 0.37 HSERO_RS07185 Ornithine carbamoyltransferase (EC 2.1.3.3) (from data)
Pseudomonas putida KT2440 0.34 PP_1461 GTPase component of the signal recognition particle (SRP) 0.37 PP_1079 Ornithine carbamoyltransferase
Castellaniella sp019104865 MT123 0.34 ABCV34_RS09010 signal recognition particle protein 0.41 ABCV34_RS05380 ornithine carbamoyltransferase
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_1281 signal recognition particle subunit FFH/SRP54 (srp54) 0.38 Psyr_3901 ornithine carbamoyltransferase
Marinobacter adhaerens HP15 0.34 HP15_757 signal recognition particle protein 0.37 HP15_750 ornithine carbamoyltransferase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_1281 signal recognition particle subunit FFH/SRP54 (srp54) 0.38 Psyr_3901 ornithine carbamoyltransferase
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_09570 ffh signal recognition particle protein 0.22 OKGIIK_09480 argF N-acetylornithine carbamoyltransferase
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS17890 signal recognition particle protein 0.36 RR42_RS17175 ornithine carbamoyltransferase
Ralstonia solanacearum GMI1000 0.34 RS_RS14055 signal recognition particle protein 0.39 RS_RS12805 ornithine carbamoyltransferase
Vibrio cholerae E7946 ATCC 55056 0.34 CSW01_02990 signal recognition particle protein 0.34 CSW01_12720 ornithine carbamoyltransferase
Azospirillum brasilense Sp245 0.34 AZOBR_RS03510 signal recognition particle protein 0.42 AZOBR_RS19030 ornithine carbamoyltransferase
Lysobacter sp. OAE881 0.34 ABIE51_RS07735 signal recognition particle protein 0.20 ABIE51_RS13410 N-acetylornithine carbamoyltransferase
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS08830 signal recognition particle protein 0.22 ABZR86_RS08730 N-acetylornithine carbamoyltransferase
Ralstonia solanacearum PSI07 0.34 RPSI07_RS11135 signal recognition particle protein 0.39 RPSI07_RS12115 ornithine carbamoyltransferase
Ralstonia solanacearum UW163 0.33 UW163_RS07520 signal recognition particle protein 0.39 UW163_RS08440 ornithine carbamoyltransferase
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS01770 signal recognition particle protein 0.38 ABZR87_RS00840 ornithine carbamoyltransferase
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS06105 signal recognition particle protein 0.39 RALBFv3_RS05185 ornithine carbamoyltransferase
Azospirillum sp. SherDot2 0.33 MPMX19_00322 Signal recognition particle protein 0.40 MPMX19_02178 Ornithine carbamoyltransferase, anabolic
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.3774.1 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) 0.21 Xcc-8004.2316.1 N-acetylornithine carbamoyltransferase (EC 2.1.3.9)
Acidovorax sp. GW101-3H11 0.33 Ac3H11_4015 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) 0.40 Ac3H11_1333 Ornithine carbamoyltransferase (EC 2.1.3.3)
Bosea sp. OAE506 0.33 ABIE41_RS11730 signal recognition particle protein 0.34 ABIE41_RS04335 ornithine carbamoyltransferase
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS02515 signal recognition particle protein 0.22 LRK54_RS02415 N-acetylornithine carbamoyltransferase
Rhodanobacter denitrificans MT42 0.33 LRK55_RS02270 signal recognition particle protein 0.22 LRK55_RS02170 N-acetylornithine carbamoyltransferase
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_4158 signal recognition particle subunit FFH/SRP54 (srp54) 0.36 Ga0059261_3206 ornithine carbamoyltransferase
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_1771 ffh signal recognition particle subunit FFH/SRP54 (srp54) 0.41 Synpcc7942_2514 argF ornithine carbamoyltransferase
Dinoroseobacter shibae DFL-12 0.32 Dshi_0353 signal recognition particle protein (RefSeq) 0.36 Dshi_0796 ornithine carbamoyltransferase (RefSeq)
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF599 Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) 0.39 GFF3419 Ornithine carbamoyltransferase (EC 2.1.3.3)
Rhodospirillum rubrum S1H 0.32 Rru_A1184 Signal recognition particle protein (NCBI) 0.39 Rru_A3276 Ornithine carbamoyltransferase (NCBI)
Variovorax sp. SCN45 0.32 GFF4428 Signal recognition particle protein Ffh 0.40 GFF3926 Ornithine carbamoyltransferase (EC 2.1.3.3)
Variovorax sp. OAS795 0.32 ABID97_RS06435 signal recognition particle protein 0.40 ABID97_RS08630 ornithine carbamoyltransferase
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_03768 signal recognition particle GTPase, SRP 0.34 CCNA_02325 ornithine carbamoyltransferase low > 67
Caulobacter crescentus NA1000 0.31 CCNA_03768 signal recognition particle GTPase, SRP 0.34 CCNA_02325 ornithine carbamoyltransferase
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS14850 signal recognition particle protein 0.39 A4249_RS11920 ornithine carbamoyltransferase
Rhodopseudomonas palustris CGA009 0.31 TX73_001270 signal recognition particle protein 0.38 TX73_024805 ornithine carbamoyltransferase
Phaeobacter inhibens DSM 17395 0.30 PGA1_c00630 signal recognition particle protein Ffh 0.37 PGA1_c24220 ornithine carbamoyltransferase ArgF
Agrobacterium fabrum C58 0.30 Atu2697 signal recognition particle protein 0.39 Atu0429 ornithine carbamoyltransferase
Sinorhizobium meliloti 1021 0.29 SMc03857 signal recognition particle protein 0.39 SMc02137 ornithine carbamoyltransferase
Rhizobium sp. OAE497 0.28 ABIE40_RS18335 signal recognition particle protein 0.39 ABIE40_RS02325 ornithine carbamoyltransferase
Methanococcus maripaludis S2 0.22 MMP_RS07975 signal recognition particle protein Srp54 0.37 MMP_RS02925 ornithine carbamoyltransferase
Methanococcus maripaludis JJ 0.22 MMJJ_RS06380 signal recognition particle protein Srp54 0.37 MMJJ_RS02150 ornithine carbamoyltransferase

Not shown: 5 genomes with orthologs for BBR_RS12310 only; 0 genomes with orthologs for BBR_RS13905 only