| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Shewanella amazonensis SB2B | 1.0 | Sama_0337 | | isopropylmalate isomerase large subunit (RefSeq) | 1.0 | Sama_3250 | | diaminopimelate decarboxylase (RefSeq) | 0.95 | 14 |
| Shewanella sp. ANA-3 | 0.86 | Shewana3_3759 | | isopropylmalate isomerase large subunit (RefSeq) | 0.84 | Shewana3_0390 | | diaminopimelate decarboxylase (RefSeq) | 0.95 | 10 |
| Shewanella loihica PV-4 | 0.86 | Shew_3470 | | isopropylmalate isomerase large subunit (RefSeq) | 0.81 | Shew_0322 | | diaminopimelate decarboxylase (RefSeq) | 0.99 | 12 |
| Shewanella oneidensis MR-1 | 0.85 | SO4234 | leuC | 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) | 0.84 | SO4309 | lysA | diaminopimelate decarboxylase (NCBI ptt file) | 0.98 | 6 |
| Escherichia fergusonii Becca | 0.73 | EFB2_03973 | | 3-isopropylmalate dehydratase large subunit | 0.20 | EFB2_01045 | | Diaminopimelate decarboxylase | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.73 | OHPLBJKB_03585 | | 3-isopropylmalate dehydratase large subunit | 0.20 | OHPLBJKB_00891 | | Diaminopimelate decarboxylase | low | > 73 |
| Escherichia coli ECOR38 | 0.73 | HEPCGN_08705 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.20 | HEPCGN_19565 | lysA | diaminopimelate decarboxylase | 0.99 | 5 |
| Escherichia coli BW25113 | 0.73 | b0072 | leuC | isopropylmalate isomerase large subunit (NCBI) | 0.20 | b2838 | lysA | diaminopimelate decarboxylase, PLP-binding (NCBI) | 0.92 | 33 |
| Escherichia coli Nissle 1917 | 0.73 | ECOLIN_RS00390 | | 3-isopropylmalate dehydratase large subunit | 0.20 | ECOLIN_RS15930 | | diaminopimelate decarboxylase | 0.97 | 2 |
| Escherichia coli ECOR27 | 0.73 | NOLOHH_03070 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.20 | NOLOHH_11830 | lysA | diaminopimelate decarboxylase | 0.96 | 17 |
| Escherichia coli BL21 | 0.73 | ECD_00074 | | 3-isopropylmalate dehydratase large subunit | 0.20 | ECD_02686 | | diaminopimelate decarboxylase, PLP-binding | 0.86 | 30 |
| Escherichia coli ECRC62 | 0.73 | BNILDI_08540 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.20 | BNILDI_10310 | lysA | diaminopimelate decarboxylase | 0.98 | 16 |
| Escherichia coli ECRC102 | 0.72 | NIAGMN_08575 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.20 | NIAGMN_17715 | lysA | diaminopimelate decarboxylase | — | — |
| Escherichia coli ECRC99 | 0.72 | KEDOAH_17430 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.20 | KEDOAH_08185 | lysA | diaminopimelate decarboxylase | — | — |
| Escherichia coli ECRC101 | 0.72 | MCAODC_01240 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.20 | MCAODC_10470 | lysA | diaminopimelate decarboxylase | 0.97 | 5 |
| Escherichia coli ECRC100 | 0.72 | OKFHMN_10725 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.20 | OKFHMN_19945 | lysA | diaminopimelate decarboxylase | 0.96 | 36 |
| Escherichia coli ECRC98 | 0.72 | JDDGAC_14320 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.20 | JDDGAC_23610 | lysA | diaminopimelate decarboxylase | 0.92 | 29 |
| Klebsiella michiganensis M5al | 0.72 | BWI76_RS04670 | | 3-isopropylmalate dehydratase large subunit | 0.20 | BWI76_RS23360 | | diaminopimelate decarboxylase | 0.81 | 49 |
| Enterobacter asburiae PDN3 | 0.72 | EX28DRAFT_3668 | | 3-isopropylmalate dehydratase, large subunit | 0.19 | EX28DRAFT_2916 | | diaminopimelate decarboxylase | 0.74 | 37 |
| Pantoea sp. MT58 | 0.72 | IAI47_16010 | | 3-isopropylmalate dehydratase large subunit | 0.16 | IAI47_03860 | | diaminopimelate decarboxylase | 0.96 | 21 |
| Enterobacter sp. TBS_079 | 0.72 | MPMX20_00767 | | 3-isopropylmalate dehydratase large subunit 1 | 0.20 | MPMX20_03705 | | Diaminopimelate decarboxylase | 0.86 | 36 |
| Rahnella sp. WP5 | 0.72 | EX31_RS03690 | | 3-isopropylmalate dehydratase large subunit | 0.20 | EX31_RS02420 | | type III PLP-dependent enzyme | low | > 89 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.72 | GFF166 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | 0.20 | GFF1323 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | low | > 78 |
| Dickeya dadantii 3937 | 0.71 | DDA3937_RS18125 | | 3-isopropylmalate dehydratase large subunit | 0.20 | DDA3937_RS20740 | | type III PLP-dependent enzyme | low | > 74 |
| Serratia liquefaciens MT49 | 0.71 | IAI46_03345 | | 3-isopropylmalate dehydratase large subunit | 0.19 | IAI46_20520 | | diaminopimelate decarboxylase | 0.68 | 35 |
| Vibrio cholerae E7946 ATCC 55056 | 0.70 | CSW01_12605 | | 3-isopropylmalate dehydratase large subunit | 0.66 | CSW01_00635 | | diaminopimelate decarboxylase | low | > 62 |
| Dickeya dianthicola ME23 | 0.70 | DZA65_RS19210 | | 3-isopropylmalate dehydratase large subunit | 0.19 | DZA65_RS00505 | | type III PLP-dependent enzyme | low | > 75 |
| Dickeya dianthicola 67-19 | 0.70 | HGI48_RS18065 | | 3-isopropylmalate dehydratase large subunit | 0.19 | HGI48_RS00505 | | type III PLP-dependent enzyme | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.70 | HER17_RS03075 | | 3-isopropylmalate dehydratase large subunit | 0.17 | HER17_RS03710 | | diaminopimelate decarboxylase | 0.95 | 36 |
| Erwinia tracheiphila SCR3 | 0.68 | LU632_RS02870 | leuC | 3-isopropylmalate dehydratase large subunit | 0.17 | LU632_RS06040 | lysA | diaminopimelate decarboxylase | 0.87 | 7 |
| Alteromonas macleodii MIT1002 | 0.66 | MIT1002_00947 | | 3-isopropylmalate dehydratase large subunit | 0.69 | MIT1002_00160 | | Diaminopimelate decarboxylase | 0.76 | 69 |
| Azospirillum sp. SherDot2 | 0.64 | MPMX19_01998 | | 3-isopropylmalate dehydratase large subunit | 0.44 | MPMX19_05819 | | Diaminopimelate decarboxylase | — | — |
| Rhodospirillum rubrum S1H | 0.63 | Rru_A1189 | | 3-isopropylmalate dehydratase large subunit region (NCBI) | 0.43 | Rru_A0396 | | Diaminopimelate decarboxylase (NCBI) | — | — |
| Kangiella aquimarina DSM 16071 | 0.63 | B158DRAFT_1319 | | 3-isopropylmalate dehydratase, large subunit | 0.19 | B158DRAFT_0272 | | pyridoxal-dependent decarboxylase, exosortase A system-associated | — | — |
| Azospirillum brasilense Sp245 | 0.62 | AZOBR_RS03545 | | isopropylmalate isomerase | 0.44 | AZOBR_RS16945 | | diaminopimelate decarboxylase | — | — |
| Sinorhizobium meliloti 1021 | 0.61 | SMc03823 | | isopropylmalate isomerase large subunit | 0.51 | SMc00723 | | diaminopimelate DAP decarboxylase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.61 | TX73_001245 | | 3-isopropylmalate dehydratase large subunit | 0.46 | TX73_024635 | | diaminopimelate decarboxylase | — | — |
| Castellaniella sp019104865 MT123 | 0.61 | ABCV34_RS04290 | | 3-isopropylmalate dehydratase large subunit | 0.52 | ABCV34_RS12685 | | diaminopimelate decarboxylase | — | — |
| Magnetospirillum magneticum AMB-1 | 0.61 | AMB_RS20560 | | 3-isopropylmalate dehydratase large subunit | 0.45 | AMB_RS22725 | | diaminopimelate decarboxylase | — | — |
| Agrobacterium fabrum C58 | 0.61 | Atu2709 | | 3-isopropylmalate dehydratase, large subunit | 0.51 | Atu3601 | | diaminopimelate decarboxylase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.60 | RR42_RS14400 | | isopropylmalate isomerase | 0.53 | RR42_RS19050 | | diaminopimelate decarboxylase | — | — |
| Rhizobium sp. OAE497 | 0.60 | ABIE40_RS18380 | | 3-isopropylmalate dehydratase large subunit | 0.48 | ABIE40_RS17530 | | diaminopimelate decarboxylase | 0.96 | 11 |
| Pseudomonas fluorescens FW300-N1B4 | 0.60 | Pf1N1B4_15 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | 0.61 | Pf1N1B4_2174 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | — | — |
| Pseudomonas sp. RS175 | 0.60 | PFR28_02824 | | 3-isopropylmalate dehydratase large subunit | 0.60 | PFR28_04375 | | Diaminopimelate decarboxylase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.60 | Psyr_1983 | | 3-isopropylmalate dehydratase, large subunit | 0.60 | Psyr_0182 | | diaminopimelate decarboxylase | — | — |
| Pseudomonas putida KT2440 | 0.60 | PP_1985 | | 3-isopropylmalate dehydratase large subunit | 0.60 | PP_5227 | | diaminopimelate decarboxylase | 0.46 | 63 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.60 | Psyr_1983 | | 3-isopropylmalate dehydratase, large subunit | 0.60 | Psyr_0182 | | diaminopimelate decarboxylase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.59 | HSERO_RS16515 | | isopropylmalate isomerase | 0.53 | HSERO_RS00950 | | diaminopimelate decarboxylase | — | — |
| Pseudomonas stutzeri RCH2 | 0.59 | Psest_2591 | | 3-isopropylmalate dehydratase, large subunit | 0.60 | Psest_3764 | | diaminopimelate decarboxylase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.59 | PfGW456L13_3948 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | 0.61 | PfGW456L13_845 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.89 | 26 |
| Pseudomonas fluorescens FW300-N2C3 | 0.59 | AO356_21400 | | isopropylmalate isomerase | 0.60 | AO356_12740 | | diaminopimelate decarboxylase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.59 | AO353_20620 | | isopropylmalate isomerase | 0.59 | AO353_09035 | | diaminopimelate decarboxylase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.59 | ABZR87_RS14540 | | 3-isopropylmalate dehydratase large subunit | 0.54 | ABZR87_RS02640 | | diaminopimelate decarboxylase | 0.86 | 18 |
| Pseudomonas fluorescens FW300-N2E2 | 0.59 | Pf6N2E2_63 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | 0.60 | Pf6N2E2_4419 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | — | — |
| Mycobacterium tuberculosis H37Rv | 0.59 | Rv2988c | | Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) | 0.21 | Rv1293 | | Diaminopimelate decarboxylase LysA (DAP decarboxylase) | — | — |
| Ralstonia solanacearum GMI1000 | 0.59 | RS_RS10000 | | 3-isopropylmalate dehydratase large subunit | 0.55 | RS_RS14930 | | diaminopimelate decarboxylase | — | — |
| Pseudomonas simiae WCS417 | 0.59 | PS417_18600 | | isopropylmalate isomerase | 0.58 | PS417_27580 | | diaminopimelate decarboxylase | — | — |
| Bosea sp. OAE506 | 0.59 | ABIE41_RS11660 | | 3-isopropylmalate dehydratase large subunit | 0.39 | ABIE41_RS08740 | | diaminopimelate decarboxylase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.59 | QEN71_RS17605 | | 3-isopropylmalate dehydratase large subunit | 0.55 | QEN71_RS28080 | | diaminopimelate decarboxylase | 0.86 | 7 |
| Marinobacter adhaerens HP15 | 0.59 | HP15_1834 | | protein containing 3-isopropylmalate dehydratase, large subunit region domain | 0.66 | HP15_247 | | diaminopimelate decarboxylase | — | — |
| Ralstonia solanacearum UW163 | 0.59 | UW163_RS11105 | | 3-isopropylmalate dehydratase large subunit | 0.55 | UW163_RS06625 | | diaminopimelate decarboxylase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.59 | RALBFv3_RS02620 | | 3-isopropylmalate dehydratase large subunit | 0.55 | RALBFv3_RS06990 | | diaminopimelate decarboxylase | — | — |
| Pseudomonas fluorescens SBW25 | 0.59 | PFLU_RS20580 | | 3-isopropylmalate dehydratase large subunit | 0.59 | PFLU_RS29265 | | diaminopimelate decarboxylase | 0.50 | 54 |
| Pseudomonas fluorescens SBW25-INTG | 0.59 | PFLU_RS20580 | | 3-isopropylmalate dehydratase large subunit | 0.59 | PFLU_RS29265 | | diaminopimelate decarboxylase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.59 | GFF3363 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | 0.52 | GFF1341 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.54 | 66 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.59 | H281DRAFT_06075 | | 3-isopropylmalate dehydratase, large subunit | 0.54 | H281DRAFT_05606 | | diaminopimelate decarboxylase | — | — |
| Burkholderia phytofirmans PsJN | 0.59 | BPHYT_RS33915 | | isopropylmalate isomerase | 0.54 | BPHYT_RS17930 | | diaminopimelate decarboxylase | low | > 109 |
| Ralstonia solanacearum PSI07 | 0.59 | RPSI07_RS14695 | | 3-isopropylmalate dehydratase large subunit | 0.55 | RPSI07_RS10250 | | diaminopimelate decarboxylase | — | — |
| Pseudomonas sp. S08-1 | 0.59 | OH686_04480 | | 3-isopropylmalate dehydratase large subunit | 0.58 | OH686_13800 | | diaminopimelate decarboxylase | low | > 80 |
| Acinetobacter radioresistens SK82 | 0.58 | MPMX26_00345 | | 3-isopropylmalate dehydratase large subunit | 0.58 | MPMX26_02232 | | Diaminopimelate decarboxylase | low | > 36 |
| Paraburkholderia graminis OAS925 | 0.58 | ABIE53_004801 | | 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit | 0.55 | ABIE53_003749 | | diaminopimelate decarboxylase | low | > 113 |
| Acidovorax sp. GW101-3H11 | 0.58 | Ac3H11_1525 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | 0.21 | Ac3H11_3862 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | — | — |
| Variovorax sp. OAS795 | 0.58 | ABID97_RS08465 | | 3-isopropylmalate dehydratase large subunit | 0.51 | ABID97_RS23305 | | diaminopimelate decarboxylase | — | — |
| Variovorax sp. SCN45 | 0.58 | GFF3890 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | 0.51 | GFF5315 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | — | — |
| Dechlorosoma suillum PS | 0.58 | Dsui_3201 | | 3-isopropylmalate dehydratase, large subunit | 0.56 | Dsui_1182 | | diaminopimelate decarboxylase | — | — |
| Caulobacter crescentus NA1000 | 0.57 | CCNA_00196 | | 3-isopropylmalate dehydratase large subunit | 0.44 | CCNA_02296 | | diaminopimelate decarboxylase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.57 | CCNA_00196 | | 3-isopropylmalate dehydratase large subunit | 0.44 | CCNA_02296 | | diaminopimelate decarboxylase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.56 | Dshi_0085 | | 3-isopropylmalate dehydratase, large subunit (RefSeq) | 0.47 | Dshi_3059 | | diaminopimelate decarboxylase (RefSeq) | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.56 | CA264_09435 | | 3-isopropylmalate dehydratase large subunit | 0.32 | CA264_02390 | | diaminopimelate decarboxylase | low | > 74 |
| Phaeobacter inhibens DSM 17395 | 0.56 | PGA1_c29780 | | 3-isopropylmalate dehydratase large subunit | 0.46 | PGA1_c03470 | | diaminopimelate decarboxylase LysA | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.55 | Ga0059261_4223 | | 3-isopropylmalate dehydratase, large subunit | 0.41 | Ga0059261_2051 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 0.99 | 12 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.54 | CA265_RS15830 | | 3-isopropylmalate dehydratase large subunit | 0.31 | CA265_RS09650 | | diaminopimelate decarboxylase | 0.88 | 44 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.54 | ABZR88_RS11595 | | 3-isopropylmalate dehydratase large subunit | 0.31 | ABZR88_RS10180 | | diaminopimelate decarboxylase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.52 | LRK54_RS07375 | | 3-isopropylmalate dehydratase large subunit | 0.39 | LRK54_RS11485 | | diaminopimelate decarboxylase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.52 | LRK55_RS07105 | | 3-isopropylmalate dehydratase large subunit | 0.39 | LRK55_RS11215 | | diaminopimelate decarboxylase | low | > 63 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.51 | Echvi_2059 | | 3-isopropylmalate dehydratase, large subunit | 0.22 | Echvi_1295 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 0.70 | 23 |
| Lysobacter sp. OAE881 | 0.51 | ABIE51_RS17575 | | 3-isopropylmalate dehydratase large subunit | 0.38 | ABIE51_RS13675 | | diaminopimelate decarboxylase | low | > 62 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.51 | A4249_RS10005 | | 3-isopropylmalate dehydratase large subunit | 0.40 | A4249_RS12545 | | diaminopimelate decarboxylase | 0.99 | 19 |
| Dyella japonica UNC79MFTsu3.2 | 0.51 | ABZR86_RS15960 | | 3-isopropylmalate dehydratase large subunit | 0.40 | ABZR86_RS12130 | | diaminopimelate decarboxylase | low | > 74 |
| Bacteroides ovatus ATCC 8483 | 0.51 | BACOVA_04603 | | 3-isopropylmalate dehydratase, large subunit | 0.33 | BACOVA_00215 | | diaminopimelate decarboxylase | 0.97 | 9 |
| Bacteroides stercoris CC31F | 0.50 | HMPREF1181_RS14145 | | 3-isopropylmalate dehydratase large subunit | 0.31 | HMPREF1181_RS11050 | | diaminopimelate decarboxylase | 0.94 | 7 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.50 | BT1860 | | 3-isopropylmalate dehydratase large subunit (NCBI ptt file) | 0.33 | BT1374 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 0.66 | 59 |
| Rhodanobacter sp. FW510-T8 | 0.49 | OKGIIK_13585 | leuC | 3-isopropylmalate dehydratase large subunit | 0.39 | OKGIIK_12375 | lysA | diaminopimelate decarboxylase | low | > 52 |
| Synechococcus elongatus PCC 7942 | 0.49 | Synpcc7942_1898 | leuC | isopropylmalate isomerase large subunit | 0.24 | Synpcc7942_0262 | lysA | diaminopimelate decarboxylase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.49 | HMPREF1078_RS16660 | | 3-isopropylmalate dehydratase large subunit | 0.33 | HMPREF1078_RS13545 | | diaminopimelate decarboxylase | 0.96 | 15 |
| Phocaeicola vulgatus CL09T03C04 | 0.49 | HMPREF1058_RS14550 | | 3-isopropylmalate dehydratase large subunit | 0.33 | HMPREF1058_RS06195 | | diaminopimelate decarboxylase | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.49 | ABI39_RS10200 | | 3-isopropylmalate dehydratase large subunit | 0.33 | ABI39_RS19950 | | diaminopimelate decarboxylase | 0.68 | 65 |
| Methanococcus maripaludis JJ | 0.22 | MMJJ_RS08425 | | 3-isopropylmalate dehydratase large subunit | 0.32 | MMJJ_RS08170 | | diaminopimelate decarboxylase | — | — |
| Methanococcus maripaludis S2 | 0.22 | MMP_RS05930 | | 3-isopropylmalate dehydratase large subunit | 0.32 | MMP_RS06180 | | diaminopimelate decarboxylase | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.22 | DVU2982 | leuC | 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data) | 0.52 | DVU1647 | lysA-1 | diaminopimelate decarboxylase (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.21 | DvMF_1792 | | 3-isopropylmalate dehydratase large subunit (RefSeq) | 0.54 | DvMF_0353 | | diaminopimelate decarboxylase (RefSeq) | low | > 51 |