Conservation of cofitness between Sama_0337 and Sama_1943 in Shewanella amazonensis SB2B

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 1.0 Sama_1943 histidinol-phosphate aminotransferase (RefSeq) 0.95 15
Shewanella sp. ANA-3 0.86 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.54 Shewana3_1852 histidinol phosphate aminotransferase (RefSeq) 0.96 7
Shewanella loihica PV-4 0.86 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.56 Shew_2199 histidinol-phosphate aminotransferase (RefSeq) 0.97 30
Shewanella oneidensis MR-1 0.85 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.55 SO2072 hisC histidinol-phosphate aminotransferase (NCBI ptt file) 0.98 5
Escherichia fergusonii Becca 0.73 EFB2_03973 3-isopropylmalate dehydratase large subunit 0.37 EFB2_01835 Histidinol-phosphate aminotransferase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit 0.37 OHPLBJKB_01679 Histidinol-phosphate aminotransferase low > 73
Escherichia coli ECOR27 0.73 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.37 NOLOHH_15825 hisC histidinol-phosphate transaminase 0.94 25
Escherichia coli ECRC62 0.73 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.36 BNILDI_14735 hisC histidinol-phosphate transaminase 0.98 19
Escherichia coli Nissle 1917 0.73 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.37 ECOLIN_RS11950 histidinol-phosphate transaminase
Escherichia coli BW25113 0.73 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.37 b2021 hisC histidinol-phosphate aminotransferase (NCBI) 0.95 12
Escherichia coli ECOR38 0.73 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.37 HEPCGN_03215 hisC histidinol-phosphate transaminase 0.98 12
Escherichia coli BL21 0.73 ECD_00074 3-isopropylmalate dehydratase large subunit 0.37 ECD_01923 histidinol-phosphate aminotransferase 0.91 24
Escherichia coli ECRC99 0.72 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1 0.37 KEDOAH_03640 hisC histidinol-phosphate transaminase
Escherichia coli ECRC100 0.72 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.37 OKFHMN_24510 hisC histidinol-phosphate transaminase 0.92 56
Escherichia coli ECRC102 0.72 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1 0.37 NIAGMN_22455 hisC histidinol-phosphate transaminase
Escherichia coli ECRC101 0.72 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.37 MCAODC_20430 hisC histidinol-phosphate transaminase 0.97 9
Escherichia coli ECRC98 0.72 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.37 JDDGAC_28620 hisC histidinol-phosphate transaminase 0.94 18
Enterobacter asburiae PDN3 0.72 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.36 EX28DRAFT_0538 histidinol-phosphate aminotransferase 0.92 11
Klebsiella michiganensis M5al 0.72 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.36 BWI76_RS18930 histidinol-phosphate transaminase 0.87 35
Pantoea sp. MT58 0.72 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.38 IAI47_07085 histidinol-phosphate transaminase 0.98 7
Enterobacter sp. TBS_079 0.72 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.36 MPMX20_03003 Histidinol-phosphate aminotransferase 0.93 16
Rahnella sp. WP5 0.72 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.35 EX31_RS11445 histidinol-phosphate transaminase 0.98 14
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.37 GFF3911 Histidinol-phosphate aminotransferase (EC 2.6.1.9) low > 78
Dickeya dadantii 3937 0.71 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.36 DDA3937_RS09730 histidinol-phosphate transaminase 0.71 32
Serratia liquefaciens MT49 0.71 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.36 IAI46_08205 histidinol-phosphate transaminase low > 86
Dickeya dianthicola ME23 0.70 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.37 DZA65_RS10050 histidinol-phosphate transaminase low > 75
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_12605 3-isopropylmalate dehydratase large subunit 0.40 CSW01_05755 histidinol-phosphate transaminase low > 62
Dickeya dianthicola 67-19 0.70 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.37 HGI48_RS09740 histidinol-phosphate transaminase low > 71
Pectobacterium carotovorum WPP14 0.70 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.38 HER17_RS12235 histidinol-phosphate transaminase 0.97 17
Erwinia tracheiphila SCR3 0.68 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.36 LU632_RS08940 hisC histidinol-phosphate transaminase 0.79 25
Alteromonas macleodii MIT1002 0.66 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.38 MIT1002_02634 Histidinol-phosphate aminotransferase 0.96 40
Azospirillum sp. SherDot2 0.64 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.16 MPMX19_04389 Histidinol-phosphate aminotransferase
Rhodospirillum rubrum S1H 0.63 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.17 Rru_A3264 Histidinol-phosphate aminotransferase (NCBI) 0.88 22
Azospirillum brasilense Sp245 0.62 AZOBR_RS03545 isopropylmalate isomerase 0.17 AZOBR_RS20485 histidinol-phosphate aminotransferase [EC:2.6.1.9] (from data) 0.89 11
Sinorhizobium meliloti 1021 0.61 SMc03823 isopropylmalate isomerase large subunit 0.17 SMc03885 histidinol-phosphate aminotransferase low > 103
Rhodopseudomonas palustris CGA009 0.61 TX73_001245 3-isopropylmalate dehydratase large subunit 0.17 TX73_023035 histidinol-phosphate transaminase
Castellaniella sp019104865 MT123 0.61 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit 0.18 ABCV34_RS02645 histidinol-phosphate transaminase 0.47 21
Magnetospirillum magneticum AMB-1 0.61 AMB_RS20560 3-isopropylmalate dehydratase large subunit 0.16 AMB_RS20110 histidinol-phosphate aminotransferase
Agrobacterium fabrum C58 0.61 Atu2709 3-isopropylmalate dehydratase, large subunit 0.13 Atu3612 histidinol-phosphate aminotransferase
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS14400 isopropylmalate isomerase 0.17 RR42_RS04465 aspartate aminotransferase low > 128
Rhizobium sp. OAE497 0.60 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.15 ABIE40_RS17595 histidinol-phosphate transaminase 0.94 21
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.18 Pf1N1B4_1065 Histidinol-phosphate aminotransferase (EC 2.6.1.9) low > 87
Xanthomonas campestris pv. campestris strain 8004 0.60 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.32 Xcc-8004.2947.1 Histidinol-phosphate aminotransferase (EC 2.6.1.9) 0.90 13
Pseudomonas putida KT2440 0.60 PP_1985 3-isopropylmalate dehydratase large subunit 0.16 PP_0967 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) 0.89 8
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.18 Psyr_4132 histidinol phosphate aminotransferase apoenzyme 0.89 15
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.18 Psyr_4132 histidinol phosphate aminotransferase apoenzyme 0.89 18
Pseudomonas sp. RS175 0.60 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.18 PFR28_00188 Histidinol-phosphate aminotransferase 0.39 39
Pseudomonas stutzeri RCH2 0.59 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.16 Psest_3297 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) 0.81 21
Herbaspirillum seropedicae SmR1 0.59 HSERO_RS16515 isopropylmalate isomerase 0.17 HSERO_RS23520 histidinol-phosphate aminotransferase low > 78
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_21400 isopropylmalate isomerase 0.18 AO356_06960 histidinol-phosphate aminotransferase 0.62 59
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_20620 isopropylmalate isomerase 0.17 AO353_05105 histidinol-phosphate aminotransferase 0.65 58
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.18 PfGW456L13_4999 Histidinol-phosphate aminotransferase (EC 2.6.1.9) 0.67 70
Mycobacterium tuberculosis H37Rv 0.59 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) 0.15 Rv3772 Probable histidinol-phosphate aminotransferase HisC2 (imidazole acetol-phosphate transaminase) (imidazolylacetolphosphate aminotransferase)
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.18 Pf6N2E2_3251 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) 0.60 41
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.18 ABZR87_RS09455 histidinol-phosphate transaminase low > 80
Ralstonia solanacearum GMI1000 0.59 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.18 RS_RS04500 histidinol-phosphate aminotransferase low > 80
Pseudomonas simiae WCS417 0.59 PS417_18600 isopropylmalate isomerase 0.18 PS417_04425 histidinol-phosphate aminotransferase 0.40 88
Marinobacter adhaerens HP15 0.59 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.20 HP15_2427 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) 0.89 12
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.19 QEN71_RS01680 histidinol-phosphate transaminase low > 153
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.18 RALBFv3_RS13765 histidinol-phosphate transaminase low > 76
Ralstonia solanacearum UW163 0.59 UW163_RS11105 3-isopropylmalate dehydratase large subunit 0.18 UW163_RS16045 histidinol-phosphate transaminase
Pseudomonas fluorescens SBW25 0.59 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.18 PFLU_RS04475 histidinol-phosphate transaminase low > 109
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.18 PFLU_RS04475 histidinol-phosphate transaminase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.18 H281DRAFT_01942 histidinol-phosphate aminotransferase low > 103
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS33915 isopropylmalate isomerase 0.18 BPHYT_RS02830 aspartate aminotransferase low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.16 GFF1493 Histidinol-phosphate aminotransferase (EC 2.6.1.9) low > 90
Pseudomonas sp. S08-1 0.59 OH686_04480 3-isopropylmalate dehydratase large subunit 0.18 OH686_08465 histidinol-phosphate transaminase 0.91 5
Acinetobacter radioresistens SK82 0.58 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.18 MPMX26_02586 Histidinol-phosphate aminotransferase 0.92 18
Paraburkholderia graminis OAS925 0.58 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.18 ABIE53_000704 histidinol-phosphate aminotransferase low > 113
Variovorax sp. OAS795 0.58 ABID97_RS08465 3-isopropylmalate dehydratase large subunit 0.17 ABID97_RS08770 histidinol-phosphate transaminase
Variovorax sp. SCN45 0.58 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.18 GFF3955 Histidinol-phosphate aminotransferase (EC 2.6.1.9) low > 127
Dechlorosoma suillum PS 0.58 Dsui_3201 3-isopropylmalate dehydratase, large subunit 0.17 Dsui_1414 histidinol-phosphate aminotransferase
Caulobacter crescentus NA1000 Δfur 0.57 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.13 CCNA_02306 histidinol-phosphate aminotransferase low > 67
Caulobacter crescentus NA1000 0.57 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.13 CCNA_02306 histidinol-phosphate aminotransferase 0.96 9
Dinoroseobacter shibae DFL-12 0.56 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq) 0.14 Dshi_2946 histidinol-phosphate aminotransferase (RefSeq)
Pontibacter actiniarum KMM 6156, DSM 19842 0.56 CA264_09435 3-isopropylmalate dehydratase large subunit 0.26 CA264_05035 histidinol-phosphate transaminase low > 74
Phaeobacter inhibens DSM 17395 0.56 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.17 PGA1_c25240 histidinol-phosphate aminotransferase [EC:2.6.1.9] (from data)
Sphingomonas koreensis DSMZ 15582 0.55 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.15 Ga0059261_2299 histidinol-phosphate aminotransferase 0.99 11
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit 0.25 ABZR88_RS06875 histidinol-phosphate transaminase
Pedobacter sp. GW460-11-11-14-LB5 0.54 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.24 CA265_RS03630 histidinol-phosphate transaminase 0.91 35
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS07375 3-isopropylmalate dehydratase large subunit 0.33 LRK54_RS01600 histidinol-phosphate transaminase low > 59
Rhodanobacter denitrificans MT42 0.52 LRK55_RS07105 3-isopropylmalate dehydratase large subunit 0.32 LRK55_RS01380 histidinol-phosphate transaminase low > 63
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_2059 3-isopropylmalate dehydratase, large subunit 0.24 Echvi_2458 histidinol-phosphate aminotransferase 0.68 31
Lysobacter sp. OAE881 0.51 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.29 ABIE51_RS13320 histidinol-phosphate transaminase 0.93 29
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.18 A4249_RS11450 histidinol-phosphate transaminase low > 48
Bacteroides ovatus ATCC 8483 0.51 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.22 BACOVA_01233 histidinol-phosphate transaminase 0.95 22
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.29 ABZR86_RS06725 histidinol-phosphate transaminase 0.95 25
Bacteroides stercoris CC31F 0.50 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit 0.22 HMPREF1181_RS04855 histidinol-phosphate transaminase 0.92 22
Bacteroides thetaiotaomicron VPI-5482 0.50 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.22 BT0202 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) 0.88 20
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit 0.34 OKGIIK_04955 hisC histidinol-phosphate transaminase low > 52
Synechococcus elongatus PCC 7942 0.49 Synpcc7942_1898 leuC isopropylmalate isomerase large subunit 0.13 Synpcc7942_1030 hisC histidinol-phosphate aminotransferase
Parabacteroides merdae CL09T00C40 0.49 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.26 HMPREF1078_RS02445 histidinol-phosphate transaminase 0.95 27
Phocaeicola vulgatus CL09T03C04 0.49 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit 0.23 HMPREF1058_RS15880 histidinol-phosphate transaminase 0.85 15
Phocaeicola dorei CL03T12C01 0.49 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.23 ABI39_RS11840 histidinol-phosphate transaminase 0.73 57
Methanococcus maripaludis JJ 0.22 MMJJ_RS08425 3-isopropylmalate dehydratase large subunit 0.15 MMJJ_RS08090 histidinol-phosphate transaminase
Methanococcus maripaludis S2 0.22 MMP_RS05930 3-isopropylmalate dehydratase large subunit 0.15 MMP_RS06260 histidinol-phosphate transaminase
Desulfovibrio vulgaris Hildenborough JW710 0.22 DVU2982 leuC 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data) 0.22 DVU1029 hisC histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) 0.83 36
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_1792 3-isopropylmalate dehydratase large subunit (RefSeq) 0.21 DvMF_0908 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) 0.96 8

Not shown: 5 genomes with orthologs for Sama_0337 only; 0 genomes with orthologs for Sama_1943 only