Conservation of cofitness between SO4309 and SO2070 in Shewanella oneidensis MR-1

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 1.0 SO2070 hisH amidotransferase HisH (NCBI ptt file) 0.98 10
Shewanella sp. ANA-3 0.96 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.93 Shewana3_1850 hisH imidazole glycerol phosphate synthase subunit HisH (RefSeq) 0.96 16
Shewanella loihica PV-4 0.83 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.65 Shew_2201 hisH imidazole glycerol phosphate synthase subunit HisH (RefSeq) 0.97 21
Shewanella amazonensis SB2B 0.80 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.54 Sama_1945 hisH imidazole glycerol phosphate synthase subunit HisH (RefSeq) 0.94 37
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_00635 diaminopimelate decarboxylase 0.48 CSW01_05765 imidazole glycerol phosphate synthase subunit HisH low > 62
Alteromonas macleodii MIT1002 0.69 MIT1002_00160 Diaminopimelate decarboxylase 0.48 MIT1002_02636 Imidazole glycerol phosphate synthase subunit HisH 0.80 34
Marinobacter adhaerens HP15 0.67 HP15_247 diaminopimelate decarboxylase 0.33 HP15_3011 imidazole glycerol phosphate synthase subunit HisH
Pseudomonas putida KT2440 0.64 PP_5227 diaminopimelate decarboxylase 0.29 PP_0290 Imidazole glycerol phosphate synthase subunit HisH 0.46 26
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.28 PfGW456L13_361 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) 0.83 35
Pseudomonas fluorescens FW300-N1B4 0.63 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.28 Pf1N1B4_1626 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.27 Pf6N2E2_3841 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
Pseudomonas sp. RS175 0.63 PFR28_04375 Diaminopimelate decarboxylase 0.28 PFR28_04930 Imidazole glycerol phosphate synthase subunit HisH
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_0182 diaminopimelate decarboxylase 0.29 Psyr_4896 imidazole glycerol phosphate synthase subunit hisH
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_0182 diaminopimelate decarboxylase 0.29 Psyr_4896 imidazole glycerol phosphate synthase subunit hisH
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_12740 diaminopimelate decarboxylase 0.27 AO356_09810 imidazole glycerol phosphate synthase subunit HisH
Pseudomonas stutzeri RCH2 0.62 Psest_3764 diaminopimelate decarboxylase 0.29 Psest_0153 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_09035 diaminopimelate decarboxylase 0.28 AO353_12075 imidazole glycerol phosphate synthase subunit HisH
Pseudomonas sp. S08-1 0.62 OH686_13800 diaminopimelate decarboxylase 0.29 OH686_14580 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit low > 80
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS29265 diaminopimelate decarboxylase 0.28 PFLU_RS01610 imidazole glycerol phosphate synthase subunit HisH
Paraburkholderia sabiae LMG 24235 0.61 QEN71_RS28080 diaminopimelate decarboxylase 0.27 QEN71_RS27845 imidazole glycerol phosphate synthase subunit HisH 0.89 28
Pseudomonas fluorescens SBW25 0.61 PFLU_RS29265 diaminopimelate decarboxylase 0.28 PFLU_RS01610 imidazole glycerol phosphate synthase subunit HisH 0.65 74
Pseudomonas simiae WCS417 0.61 PS417_27580 diaminopimelate decarboxylase 0.28 PS417_01565 imidazole glycerol phosphate synthase
Acinetobacter radioresistens SK82 0.59 MPMX26_02232 Diaminopimelate decarboxylase 0.31 MPMX26_02846 Imidazole glycerol phosphate synthase subunit HisH low > 36
Paraburkholderia graminis OAS925 0.58 ABIE53_003749 diaminopimelate decarboxylase 0.28 ABIE53_003697 glutamine amidotransferase
Dechlorosoma suillum PS 0.58 Dsui_1182 diaminopimelate decarboxylase 0.25 Dsui_1416 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_05606 diaminopimelate decarboxylase 0.27 H281DRAFT_05657 imidazole glycerol phosphate synthase subunit hisH
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS17930 diaminopimelate decarboxylase 0.28 BPHYT_RS17690 imidazole glycerol phosphate synthase low > 109
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS06990 diaminopimelate decarboxylase 0.27 RALBFv3_RS06825 imidazole glycerol phosphate synthase subunit HisH
Ralstonia solanacearum UW163 0.57 UW163_RS06625 diaminopimelate decarboxylase 0.27 UW163_RS06790 imidazole glycerol phosphate synthase subunit HisH
Ralstonia solanacearum GMI1000 0.57 RS_RS14930 diaminopimelate decarboxylase 0.29 RS_RS14770 imidazole glycerol phosphate synthase subunit HisH
Ralstonia solanacearum PSI07 0.56 RPSI07_RS10250 diaminopimelate decarboxylase 0.29 RPSI07_RS10410 imidazole glycerol phosphate synthase subunit HisH
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS02640 diaminopimelate decarboxylase 0.27 ABZR87_RS02480 imidazole glycerol phosphate synthase subunit HisH low > 80
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS19050 diaminopimelate decarboxylase 0.28 RR42_RS18895 imidazole glycerol phosphate synthase
Castellaniella sp019104865 MT123 0.54 ABCV34_RS12685 diaminopimelate decarboxylase 0.24 ABCV34_RS11240 imidazole glycerol phosphate synthase subunit HisH
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS00950 diaminopimelate decarboxylase 0.29 HSERO_RS20325 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data)
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.26 GFF1311 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
Desulfovibrio vulgaris Miyazaki F 0.53 DvMF_0353 diaminopimelate decarboxylase (RefSeq) 0.31 DvMF_2305 hisH IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) low > 51
Variovorax sp. OAS795 0.53 ABID97_RS23305 diaminopimelate decarboxylase 0.29 ABID97_RS23135 imidazole glycerol phosphate synthase subunit HisH
Variovorax sp. SCN45 0.52 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.30 GFF5350 Imidazole glycerol phosphate synthase amidotransferase subunit HisH
Desulfovibrio vulgaris Hildenborough JW710 0.51 DVU1647 lysA-1 diaminopimelate decarboxylase (TIGR) 0.31 DVU0285 hisH IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) low > 55
Agrobacterium fabrum C58 0.50 Atu3601 diaminopimelate decarboxylase 0.28 Atu0041 glutamine amidotransferase
Sinorhizobium meliloti 1021 0.50 SMc00723 diaminopimelate DAP decarboxylase 0.27 SMc02572 imidazole glycerol phosphate synthase subunit HisH
Rhizobium sp. OAE497 0.48 ABIE40_RS17530 diaminopimelate decarboxylase 0.28 ABIE40_RS19450 imidazole glycerol phosphate synthase subunit HisH 0.96 13
Phaeobacter inhibens DSM 17395 0.47 PGA1_c03470 diaminopimelate decarboxylase LysA 0.29 PGA1_c09320 imidazole glycerol phosphate synthase subunit HisH
Rhodopseudomonas palustris CGA009 0.47 TX73_024635 diaminopimelate decarboxylase 0.26 TX73_001615 imidazole glycerol phosphate synthase subunit HisH
Dinoroseobacter shibae DFL-12 0.46 Dshi_3059 diaminopimelate decarboxylase (RefSeq) 0.30 Dshi_0795 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (RefSeq)
Azospirillum sp. SherDot2 0.45 MPMX19_05819 Diaminopimelate decarboxylase 0.33 MPMX19_02545 Imidazole glycerol phosphate synthase subunit HisH
Magnetospirillum magneticum AMB-1 0.45 AMB_RS22725 diaminopimelate decarboxylase 0.30 AMB_RS22935 imidazole glycerol phosphate synthase subunit HisH
Azospirillum brasilense Sp245 0.44 AZOBR_RS16945 diaminopimelate decarboxylase 0.28 AZOBR_RS01670 imidazole glycerol phosphate synthase
Rhodospirillum rubrum S1H 0.43 Rru_A0396 Diaminopimelate decarboxylase (NCBI) 0.29 Rru_A3596 Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (NCBI)
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_02296 diaminopimelate decarboxylase 0.24 CCNA_03851 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
Caulobacter crescentus NA1000 0.42 CCNA_02296 diaminopimelate decarboxylase 0.24 CCNA_03851 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
Sphingomonas koreensis DSMZ 15582 0.41 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.27 Ga0059261_1046 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 0.97 28
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS12545 diaminopimelate decarboxylase 0.36 A4249_RS10705 imidazole glycerol phosphate synthase subunit HisH 0.99 34
Bosea sp. OAE506 0.39 ABIE41_RS08740 diaminopimelate decarboxylase 0.26 ABIE41_RS03955 imidazole glycerol phosphate synthase subunit HisH
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS12130 diaminopimelate decarboxylase 0.43 ABZR86_RS06715 imidazole glycerol phosphate synthase subunit HisH low > 74
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_12375 lysA diaminopimelate decarboxylase 0.41 OKGIIK_04965 hisH imidazole glycerol phosphate synthase subunit HisH low > 52
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS11485 diaminopimelate decarboxylase 0.41 LRK54_RS01590 imidazole glycerol phosphate synthase subunit HisH low > 59
Rhodanobacter denitrificans MT42 0.38 LRK55_RS11215 diaminopimelate decarboxylase 0.41 LRK55_RS01370 imidazole glycerol phosphate synthase subunit HisH low > 63
Lysobacter sp. OAE881 0.38 ABIE51_RS13675 diaminopimelate decarboxylase 0.37 ABIE51_RS13310 imidazole glycerol phosphate synthase subunit HisH low > 62
Bacteroides ovatus ATCC 8483 0.33 BACOVA_00215 diaminopimelate decarboxylase 0.35 BACOVA_00221 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 0.83 63
Methanococcus maripaludis S2 0.33 MMP_RS06180 diaminopimelate decarboxylase 0.28 MMP_RS05595 imidazole glycerol phosphate synthase subunit HisH
Methanococcus maripaludis JJ 0.33 MMJJ_RS08170 diaminopimelate decarboxylase 0.28 MMJJ_RS03990 imidazole glycerol phosphate synthase subunit HisH
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS13545 diaminopimelate decarboxylase 0.36 HMPREF1078_RS13575 imidazole glycerol phosphate synthase subunit HisH 0.97 5
Bacteroides thetaiotaomicron VPI-5482 0.33 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.35 BT1380 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) 0.48 61
Phocaeicola dorei CL03T12C01 0.32 ABI39_RS19950 diaminopimelate decarboxylase 0.36 ABI39_RS19920 imidazole glycerol phosphate synthase subunit HisH 0.54 66
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS06195 diaminopimelate decarboxylase 0.36 HMPREF1058_RS06165 imidazole glycerol phosphate synthase subunit HisH low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_02390 diaminopimelate decarboxylase 0.34 CA264_05100 imidazole glycerol phosphate synthase subunit HisH low > 74
Bacteroides stercoris CC31F 0.31 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.34 HMPREF1181_RS11080 imidazole glycerol phosphate synthase subunit HisH low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS09650 diaminopimelate decarboxylase 0.33 CA265_RS03620 imidazole glycerol phosphate synthase subunit HisH 0.87 26
Mucilaginibacter yixingensis YX-36 DSM 26809 0.30 ABZR88_RS10180 diaminopimelate decarboxylase 0.32 ABZR88_RS06865 imidazole glycerol phosphate synthase subunit HisH
Synechococcus elongatus PCC 7942 0.25 Synpcc7942_0262 lysA diaminopimelate decarboxylase 0.30 Synpcc7942_1481 hisH imidazole glycerol phosphate synthase subunit HisH
Echinicola vietnamensis KMM 6221, DSM 17526 0.22 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.36 Echvi_2514 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 0.84 39
Mycobacterium tuberculosis H37Rv 0.22 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) 0.24 Rv1602 Probable amidotransferase HisH
Rahnella sp. WP5 0.21 EX31_RS02420 type III PLP-dependent enzyme 0.45 EX31_RS11455 imidazole glycerol phosphate synthase subunit HisH low > 89
Dickeya dadantii 3937 0.21 DDA3937_RS20740 type III PLP-dependent enzyme 0.47 DDA3937_RS09720 imidazole glycerol phosphate synthase subunit HisH low > 74
Dickeya dianthicola ME23 0.21 DZA65_RS00505 type III PLP-dependent enzyme 0.46 DZA65_RS10040 imidazole glycerol phosphate synthase subunit HisH
Dickeya dianthicola 67-19 0.20 HGI48_RS00505 type III PLP-dependent enzyme 0.46 HGI48_RS09730 imidazole glycerol phosphate synthase subunit HisH low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.20 GFF1925 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.45 GFF3909 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) low > 78
Klebsiella michiganensis M5al 0.19 BWI76_RS23360 diaminopimelate decarboxylase 0.45 BWI76_RS18940 imidazole glycerol phosphate synthase subunit HisH 0.80 27
Acidovorax sp. GW101-3H11 0.19 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.29 Ac3H11_4731 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
Escherichia coli ECRC99 0.19 KEDOAH_08185 lysA diaminopimelate decarboxylase 0.44 KEDOAH_03650 hisH imidazole glycerol phosphate synthase subunit HisH
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_00891 Diaminopimelate decarboxylase 0.44 OHPLBJKB_01677 Imidazole glycerol phosphate synthase subunit HisH low > 73
Escherichia fergusonii Becca 0.19 EFB2_01045 Diaminopimelate decarboxylase 0.44 EFB2_01833 Imidazole glycerol phosphate synthase subunit HisH low > 86
Escherichia coli BW25113 0.19 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.44 b2023 hisH imidazole glycerol phosphate synthase subunit HisH (NCBI) 0.90 30
Escherichia coli ECOR38 0.19 HEPCGN_19565 lysA diaminopimelate decarboxylase 0.44 HEPCGN_03205 hisH imidazole glycerol phosphate synthase subunit HisH 0.97 20
Escherichia coli BL21 0.19 ECD_02686 diaminopimelate decarboxylase, PLP-binding 0.44 ECD_01925 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 0.69 56
Escherichia coli Nissle 1917 0.19 ECOLIN_RS15930 diaminopimelate decarboxylase 0.44 ECOLIN_RS11960 imidazole glycerol phosphate synthase subunit HisH
Escherichia coli ECRC98 0.19 JDDGAC_23610 lysA diaminopimelate decarboxylase 0.44 JDDGAC_28610 hisH imidazole glycerol phosphate synthase subunit HisH 0.83 28
Serratia liquefaciens MT49 0.19 IAI46_20520 diaminopimelate decarboxylase 0.46 IAI46_08195 imidazole glycerol phosphate synthase subunit HisH low > 86
Escherichia coli ECRC100 0.19 OKFHMN_19945 lysA diaminopimelate decarboxylase 0.44 OKFHMN_24500 hisH imidazole glycerol phosphate synthase subunit HisH 0.91 56
Escherichia coli ECRC101 0.19 MCAODC_10470 lysA diaminopimelate decarboxylase 0.44 MCAODC_20440 hisH imidazole glycerol phosphate synthase subunit HisH 0.72 81
Escherichia coli ECRC102 0.19 NIAGMN_17715 lysA diaminopimelate decarboxylase 0.43 NIAGMN_22445 hisH imidazole glycerol phosphate synthase subunit HisH
Escherichia coli ECRC62 0.18 BNILDI_10310 lysA diaminopimelate decarboxylase 0.44 BNILDI_14725 hisH imidazole glycerol phosphate synthase subunit HisH 0.97 31
Escherichia coli ECOR27 0.18 NOLOHH_11830 lysA diaminopimelate decarboxylase 0.44 NOLOHH_15815 hisH imidazole glycerol phosphate synthase subunit HisH 0.92 45
Enterobacter asburiae PDN3 0.18 EX28DRAFT_2916 diaminopimelate decarboxylase 0.44 EX28DRAFT_0536 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 0.80 30
Kangiella aquimarina DSM 16071 0.18 B158DRAFT_0272 pyridoxal-dependent decarboxylase, exosortase A system-associated 0.17 B158DRAFT_2290 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
Enterobacter sp. TBS_079 0.18 MPMX20_03705 Diaminopimelate decarboxylase 0.45 MPMX20_03005 Imidazole glycerol phosphate synthase subunit HisH 0.89 5
Pectobacterium carotovorum WPP14 0.17 HER17_RS03710 diaminopimelate decarboxylase 0.45 HER17_RS12245 imidazole glycerol phosphate synthase subunit HisH 0.95 17
Erwinia tracheiphila SCR3 0.16 LU632_RS06040 lysA diaminopimelate decarboxylase 0.45 LU632_RS08930 hisH imidazole glycerol phosphate synthase subunit HisH 0.80 17
Pantoea sp. MT58 0.16 IAI47_03860 diaminopimelate decarboxylase 0.46 IAI47_07075 imidazole glycerol phosphate synthase subunit HisH 0.95 19

Not shown: 0 genomes with orthologs for SO4309 only; 2 genomes with orthologs for SO2070 only