Conservation of cofitness between b3164 and b3871 in Escherichia coli BW25113

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3164 pnp polynucleotide phosphorylase/polyadenylase (RefSeq) 1.0 b3871 bipA GTP-binding protein (NCBI) 0.42 5
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00536 Polyribonucleotide nucleotidyltransferase 1.00 OHPLBJKB_04181 GTP-binding protein TypA/BipA low > 73
Escherichia coli BL21 1.00 ECD_03031 polynucleotide phosphorylase/polyadenylase 1.00 ECD_03756 GTP-binding protein low > 60
Escherichia coli ECOR38 1.00 HEPCGN_17015 pnp polyribonucleotide nucleotidyltransferase 1.00 HEPCGN_12720 typA ribosome-dependent GTPase TypA — —
Escherichia coli ECRC99 1.00 KEDOAH_10010 pnp polyribonucleotide nucleotidyltransferase 1.00 KEDOAH_14060 typA ribosome-dependent GTPase TypA — —
Escherichia coli ECRC98 1.00 JDDGAC_21765 pnp polyribonucleotide nucleotidyltransferase 1.00 JDDGAC_17715 typA ribosome-dependent GTPase TypA — —
Escherichia coli ECRC62 1.00 BNILDI_01595 pnp polyribonucleotide nucleotidyltransferase 1.00 BNILDI_05310 typA ribosome-dependent GTPase TypA — —
Escherichia coli ECRC102 1.00 NIAGMN_15900 pnp polyribonucleotide nucleotidyltransferase 1.00 NIAGMN_11845 typA ribosome-dependent GTPase TypA — —
Escherichia coli ECRC101 1.00 MCAODC_08660 pnp polyribonucleotide nucleotidyltransferase 1.00 MCAODC_04590 typA ribosome-dependent GTPase TypA — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS18175 polyribonucleotide nucleotidyltransferase 1.00 ECOLIN_RS22315 ribosome-dependent GTPase TypA low > 52
Escherichia coli ECRC101 1.00 OKFHMN_18140 pnp polyribonucleotide nucleotidyltransferase 1.00 OKFHMN_14090 typA ribosome-dependent GTPase TypA — —
Escherichia coli ECOR27 1.00 NOLOHH_09940 pnp polyribonucleotide nucleotidyltransferase 1.00 NOLOHH_06220 typA ribosome-dependent GTPase TypA low > 57
Escherichia fergusonii Becca 1.00 EFB2_00659 Polyribonucleotide nucleotidyltransferase 1.00 EFB2_04745 GTP-binding protein TypA/BipA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.96 GFF1502 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.97 GFF2223 GTP-binding protein TypA/BipA 0.47 41
Enterobacter sp. TBS_079 0.95 MPMX20_04068 Polyribonucleotide nucleotidyltransferase 0.96 MPMX20_04594 GTP-binding protein TypA/BipA — —
Enterobacter asburiae PDN3 0.95 EX28DRAFT_3213 polyribonucleotide nucleotidyltransferase 0.95 EX28DRAFT_4353 GTP-binding protein TypA/BipA — —
Klebsiella michiganensis M5al 0.94 BWI76_RS25065 polyribonucleotide nucleotidyltransferase 0.95 BWI76_RS00410 translational GTPase TypA — —
Erwinia tracheiphila SCR3 0.91 LU632_RS21040 pnp polyribonucleotide nucleotidyltransferase 0.91 LU632_RS22150 typA ribosome-dependent GTPase TypA — —
Pantoea sp. MT58 0.90 IAI47_17005 polyribonucleotide nucleotidyltransferase 0.93 IAI47_00465 ribosome-dependent GTPase TypA low > 76
Dickeya dadantii 3937 0.89 DDA3937_RS03090 polyribonucleotide nucleotidyltransferase 0.91 DDA3937_RS00140 ribosome-dependent GTPase TypA low > 74
Serratia liquefaciens MT49 0.89 IAI46_01955 polyribonucleotide nucleotidyltransferase 0.93 IAI46_24945 ribosome-dependent GTPase TypA low > 86
Rahnella sp. WP5 0.89 EX31_RS08520 polyribonucleotide nucleotidyltransferase 0.90 EX31_RS15865 ribosome-dependent GTPase TypA low > 89
Dickeya dianthicola ME23 0.89 DZA65_RS03255 polyribonucleotide nucleotidyltransferase 0.91 DZA65_RS22195 ribosome-dependent GTPase TypA low > 75
Dickeya dianthicola 67-19 0.88 HGI48_RS03260 polyribonucleotide nucleotidyltransferase 0.91 HGI48_RS21220 ribosome-dependent GTPase TypA low > 71
Pectobacterium carotovorum WPP14 0.88 HER17_RS18190 polyribonucleotide nucleotidyltransferase 0.91 HER17_RS21425 ribosome-dependent GTPase TypA — —
Vibrio cholerae E7946 ATCC 55056 0.77 CSW01_03410 polyribonucleotide nucleotidyltransferase 0.78 CSW01_13840 translational GTPase TypA low > 62
Shewanella amazonensis SB2B 0.73 Sama_0966 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.79 Sama_3415 virulence regulator BipA (RefSeq) — —
Shewanella loihica PV-4 0.73 Shew_2822 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.80 Shew_3553 GTP-binding protein TypA (RefSeq) — —
Shewanella sp. ANA-3 0.72 Shewana3_1035 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.78 Shewana3_0301 GTP-binding protein TypA (RefSeq) — —
Shewanella oneidensis MR-1 0.71 SO1209 pnp polyribonucleotide nucleotidyltransferase (NCBI ptt file) 0.78 SO4408 bipA virulence regulator BipA (NCBI ptt file) — —
Alteromonas macleodii MIT1002 0.71 MIT1002_01888 Polyribonucleotide nucleotidyltransferase 0.77 MIT1002_03181 hypothetical protein — —
Dechlorosoma suillum PS 0.66 Dsui_2718 polyribonucleotide nucleotidyltransferase 0.64 Dsui_2423 GTP-binding protein TypA/BipA — —
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_0104 polyribonucleotide nucleotidyltransferase 0.77 B158DRAFT_0725 GTP-binding protein TypA/BipA — —
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS08755 polynucleotide phosphorylase/polyadenylase 0.61 HSERO_RS17980 GTP-binding protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF3677 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.58 GFF4346 GTP-binding protein TypA/BipA — —
Variovorax sp. SCN45 0.65 GFF4746 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.58 GFF219 GTP-binding protein TypA/BipA — —
Acidovorax sp. GW101-3H11 0.64 Ac3H11_1456 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.59 Ac3H11_2864 GTP-binding protein TypA/BipA — —
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_04562 polyribonucleotide nucleotidyltransferase 0.65 H281DRAFT_05111 GTP-binding protein — —
Paraburkholderia graminis OAS925 0.64 ABIE53_001586 polyribonucleotide nucleotidyltransferase 0.65 ABIE53_002454 GTP-binding protein — —
Variovorax sp. OAS795 0.64 ABID97_RS20520 polyribonucleotide nucleotidyltransferase 0.58 ABID97_RS16470 translational GTPase TypA low > 91
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS06600 polynucleotide phosphorylase/polyadenylase 0.64 BPHYT_RS08105 GTP-binding protein — —
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS24175 polyribonucleotide nucleotidyltransferase 0.65 QEN71_RS23065 translational GTPase TypA — —
Marinobacter adhaerens HP15 0.63 HP15_3063 polynucleotide phosphorylase/polyadenylase 0.74 HP15_429 GTP-binding protein TypA — —
Dyella japonica UNC79MFTsu3.2 0.62 ABZR86_RS06005 polyribonucleotide nucleotidyltransferase 0.69 ABZR86_RS20640 translational GTPase TypA — —
Rhodanobacter denitrificans FW104-10B01 0.62 LRK54_RS01025 polyribonucleotide nucleotidyltransferase 0.69 LRK54_RS00775 translational GTPase TypA — —
Rhodanobacter denitrificans MT42 0.62 LRK55_RS00800 polyribonucleotide nucleotidyltransferase 0.69 LRK55_RS00550 translational GTPase TypA — —
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.2006.1 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.70 Xcc-8004.4106.1 GTP-binding protein TypA/BipA — —
Ralstonia solanacearum GMI1000 0.62 RS_RS10375 polyribonucleotide nucleotidyltransferase 0.63 RS_RS06495 translational GTPase TypA — —
Castellaniella sp019104865 MT123 0.62 ABCV34_RS01240 polyribonucleotide nucleotidyltransferase 0.61 ABCV34_RS02140 translational GTPase TypA — —
Rhodanobacter sp. FW510-T8 0.62 OKGIIK_05870 pnp polyribonucleotide nucleotidyltransferase 0.68 OKGIIK_06470 typA translational GTPase TypA — —
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS05485 polynucleotide phosphorylase/polyadenylase 0.63 RR42_RS12810 GTP-binding protein — —
Pseudomonas sp. S08-1 0.62 OH686_17165 polyribonucleotide nucleotidyltransferase 0.74 OH686_10610 GTP-binding protein TypA/BipA low > 80
Pseudomonas putida KT2440 0.62 PP_4708 Polyribonucleotide nucleotidyltransferase 0.71 PP_5044 ribosome associated GTPase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_4176 Polyribonucleotide nucleotidyltransferase 0.72 Psyr_4815 Small GTP-binding protein domain:GTP-binding protein TypA — —
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_4176 Polyribonucleotide nucleotidyltransferase 0.72 Psyr_4815 Small GTP-binding protein domain:GTP-binding protein TypA — —
Pseudomonas sp. RS175 0.61 PFR28_00094 Polyribonucleotide nucleotidyltransferase 0.71 PFR28_04951 GTP-binding protein TypA/BipA — —
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_1156 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.56 Pf1N1B4_1601 GTP-binding protein TypA/BipA — —
Pseudomonas stutzeri RCH2 0.61 Psest_0986 polyribonucleotide nucleotidyltransferase 0.73 Psest_3926 GTP-binding protein TypA/BipA — —
Ralstonia solanacearum PSI07 0.61 RPSI07_RS14305 polyribonucleotide nucleotidyltransferase 0.64 RPSI07_RS17640 translational GTPase TypA low > 81
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS03005 polyribonucleotide nucleotidyltransferase 0.63 RALBFv3_RS15715 translational GTPase TypA — —
Ralstonia solanacearum UW163 0.61 UW163_RS10720 polyribonucleotide nucleotidyltransferase 0.63 UW163_RS13160 translational GTPase TypA — —
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_05540 polyribonucleotide nucleotidyltransferase 0.71 AO353_12180 GTP-binding protein TypA — —
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_07390 polyribonucleotide nucleotidyltransferase 0.71 AO356_09695 GTP-binding protein TypA — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_3349 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.71 Pf6N2E2_3818 GTP-binding protein TypA/BipA — —
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS14910 polyribonucleotide nucleotidyltransferase 0.64 ABZR87_RS11245 translational GTPase TypA low > 80
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_5084 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.70 PfGW456L13_340 GTP-binding protein TypA/BipA — —
Lysobacter sp. OAE881 0.60 ABIE51_RS08415 polyribonucleotide nucleotidyltransferase 0.68 ABIE51_RS05990 translational GTPase TypA — —
Acinetobacter radioresistens SK82 0.59 MPMX26_00275 Polyribonucleotide nucleotidyltransferase 0.72 MPMX26_02489 GTP-binding protein TypA/BipA low > 36
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase 0.70 PFLU_RS01720 translational GTPase TypA — —
Pseudomonas fluorescens SBW25 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase 0.70 PFLU_RS01720 translational GTPase TypA — —
Pseudomonas simiae WCS417 0.59 PS417_23950 polynucleotide phosphorylase/polyadenylase 0.70 PS417_01665 GTP-binding protein TypA — —
Rhizobium sp. OAE497 0.56 ABIE40_RS00355 polyribonucleotide nucleotidyltransferase 0.54 ABIE40_RS18125 translational GTPase TypA — —
Agrobacterium fabrum C58 0.55 Atu0082 polyribonucleotide nucleotidyltransferase 0.53 Atu2663 GTP-binding tyrosin phosphorylated protein — —
Rhodospirillum rubrum S1H 0.55 Rru_A3785 3' exoribonuclease (NCBI) 0.50 Rru_A0148 GTP-binding protein TypA (NCBI) — —
Bosea sp. OAE506 0.55 ABIE41_RS04595 polyribonucleotide nucleotidyltransferase 0.52 ABIE41_RS04255 translational GTPase TypA — —
Caulobacter crescentus NA1000 0.54 CCNA_00033 polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase 0.49 CCNA_00778 GTP-binding protein TypA/BipA — —
Caulobacter crescentus NA1000 Δfur 0.54 CCNA_00033 polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase 0.49 CCNA_00778 GTP-binding protein TypA/BipA — —
Rhodopseudomonas palustris CGA009 0.54 TX73_002245 polyribonucleotide nucleotidyltransferase 0.53 TX73_002120 translational GTPase TypA — —
Azospirillum sp. SherDot2 0.54 MPMX19_02526 Polyribonucleotide nucleotidyltransferase 0.53 MPMX19_01378 GTP-binding protein TypA/BipA — —
Dinoroseobacter shibae DFL-12 0.54 Dshi_2997 Polyribonucleotide nucleotidyltransferase (RefSeq) 0.51 Dshi_0019 GTP-binding protein TypA (RefSeq) — —
Sinorhizobium meliloti 1021 0.54 SMc00324 polynucleotide phosphorylase/polyadenylase 0.53 SMc03242 GTP-binding protein — —
Azospirillum brasilense Sp245 0.54 AZOBR_RS01385 polynucleotide phosphorylase 0.53 AZOBR_RS09920 GTP-binding protein TypA — —
Phaeobacter inhibens DSM 17395 0.52 PGA1_c33000 polyribonucleotide nucleotidyltransferase Pnp 0.51 PGA1_c15300 GTP-binding protein TypA — —
Sphingomonas koreensis DSMZ 15582 0.51 Ga0059261_2140 polyribonucleotide nucleotidyltransferase 0.55 Ga0059261_0817 GTP-binding protein TypA/BipA — —
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS13355 polyribonucleotide nucleotidyltransferase 0.49 A4249_RS13585 translational GTPase TypA — —
Fusobacterium nucleatum SB010 0.44 HUW76_01280 polyribonucleotide nucleotidyltransferase 0.54 HUW76_06170 translational GTPase TypA — —
Synechococcus elongatus PCC 7942 0.44 Synpcc7942_2440 pnp polynucleotide phosphorylase/polyadenylase 0.51 Synpcc7942_1525 typA GTP-binding protein TypA low > 38
Desulfovibrio vulgaris Miyazaki F 0.44 DvMF_2508 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.49 DvMF_0822 GTP-binding protein TypA (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.41 DVU0503 pnp polyribonucleotide nucleotidyltransferase (TIGR) 0.49 DVU2231 typA GTP-binding protein TypA (TIGR) — —
Mycobacterium tuberculosis H37Rv 0.40 Rv2783c Bifunctional protein polyribonucleotide nucleotidyltransferase GpsI: guanosine pentaphosphate synthetase + polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (pnpase) 0.42 Rv1165 Possible GTP-binding translation elongation factor TypA (tyrosine phosphorylated protein A) (GTP-binding protein) — —
Bacteroides ovatus ATCC 8483 0.39 BACOVA_01641 polyribonucleotide nucleotidyltransferase 0.51 BACOVA_01078 GTP-binding protein TypA — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_3436 polyribonucleotide nucleotidyltransferase 0.49 Echvi_4063 GTP-binding protein TypA/BipA — —
Bacteroides thetaiotaomicron VPI-5482 0.39 BT2563 polyribonucleotide nucleotidyltransferase (NCBI ptt file) 0.51 BT2787 GTP-binding elongation factor family protein TypA/BipA (NCBI ptt file) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS06490 polyribonucleotide nucleotidyltransferase 0.51 ABZR88_RS00415 translational GTPase TypA — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_04880 polyribonucleotide nucleotidyltransferase 0.49 CA264_00540 translational GTPase TypA — —
Phocaeicola vulgatus CL09T03C04 0.38 HMPREF1058_RS12555 polyribonucleotide nucleotidyltransferase 0.50 HMPREF1058_RS10055 translational GTPase TypA — —
Phocaeicola dorei CL03T12C01 0.38 ABI39_RS04155 polyribonucleotide nucleotidyltransferase 0.50 ABI39_RS06695 translational GTPase TypA — —
Parabacteroides merdae CL09T00C40 0.38 HMPREF1078_RS17715 polyribonucleotide nucleotidyltransferase 0.49 HMPREF1078_RS17580 translational GTPase TypA — —
Bacteroides stercoris CC31F 0.38 HMPREF1181_RS00815 polyribonucleotide nucleotidyltransferase 0.51 HMPREF1181_RS01180 translational GTPase TypA — —
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS08985 polyribonucleotide nucleotidyltransferase 0.50 CA265_RS23750 translational GTPase TypA — —
Bifidobacterium breve UCC2003 0.37 BBR_RS12245 polyribonucleotide nucleotidyltransferase 0.42 BBR_RS16690 translational GTPase TypA — —

Not shown: 1 genomes with orthologs for b3164 only; 0 genomes with orthologs for b3871 only