Conservation of cofitness between b3960 and b3771 in Escherichia coli BW25113

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3960 argH argininosuccinate lyase (NCBI) 1.0 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.94 8
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04090 Argininosuccinate lyase 1.00 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli BL21 1.00 ECD_03845 argininosuccinate lyase 1.00 ECD_03649 dihydroxyacid dehydratase 0.71 25
Escherichia coli ECOR38 1.00 HEPCGN_12220 argH argininosuccinate lyase 1.00 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 85
Escherichia coli Nissle 1917 0.99 ECOLIN_RS22855 argininosuccinate lyase 0.99 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 52
Escherichia fergusonii Becca 0.99 EFB2_04654 Argininosuccinate lyase 0.99 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Escherichia coli ECRC62 0.99 BNILDI_05805 argH argininosuccinate lyase 1.00 BNILDI_04750 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECOR27 0.99 NOLOHH_05720 argH argininosuccinate lyase 1.00 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 57
Escherichia coli ECRC101 0.99 MCAODC_04075 argH argininosuccinate lyase 1.00 MCAODC_05145 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 0.99 OKFHMN_13575 argH argininosuccinate lyase 1.00 OKFHMN_14640 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC98 0.99 JDDGAC_17200 argH argininosuccinate lyase 1.00 JDDGAC_18260 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC99 0.99 KEDOAH_14585 argH argininosuccinate lyase 1.00 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC102 0.99 NIAGMN_11325 argH argininosuccinate lyase 1.00 NIAGMN_12395 ilvD dihydroxy-acid dehydratase — —
Klebsiella michiganensis M5al 0.96 BWI76_RS00855 argininosuccinate lyase 0.96 BWI76_RS00975 dihydroxy-acid dehydratase 0.94 5
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF2346 Argininosuccinate lyase (EC 4.3.2.1) 0.97 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Enterobacter asburiae PDN3 0.94 EX28DRAFT_4422 argininosuccinate lyase 0.96 EX28DRAFT_4443 dihydroxy-acid dehydratase 0.77 40
Enterobacter sp. TBS_079 0.93 MPMX20_04520 Argininosuccinate lyase 0.97 MPMX20_04499 Dihydroxy-acid dehydratase 0.94 4
Rahnella sp. WP5 0.88 EX31_RS14180 argininosuccinate lyase 0.87 EX31_RS15005 dihydroxy-acid dehydratase 0.99 7
Serratia liquefaciens MT49 0.88 IAI46_24500 argininosuccinate lyase 0.90 IAI46_24345 dihydroxy-acid dehydratase 0.84 19
Pantoea sp. MT58 0.88 IAI47_00920 argininosuccinate lyase 0.89 IAI47_01035 dihydroxy-acid dehydratase 0.98 2
Erwinia tracheiphila SCR3 0.88 LU632_RS19600 argH argininosuccinate lyase 0.86 LU632_RS24400 ilvD dihydroxy-acid dehydratase 0.74 34
Dickeya dadantii 3937 0.86 DDA3937_RS20340 argininosuccinate lyase 0.92 DDA3937_RS20155 dihydroxy-acid dehydratase 0.84 17
Pectobacterium carotovorum WPP14 0.86 HER17_RS20620 argininosuccinate lyase 0.91 HER17_RS01075 dihydroxy-acid dehydratase 0.70 60
Dickeya dianthicola 67-19 0.84 HGI48_RS00885 argininosuccinate lyase 0.91 HGI48_RS20295 dihydroxy-acid dehydratase 0.88 14
Dickeya dianthicola ME23 0.84 DZA65_RS00945 argininosuccinate lyase 0.91 DZA65_RS21335 dihydroxy-acid dehydratase 0.75 23
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_13360 argininosuccinate lyase 0.85 CSW01_00140 dihydroxy-acid dehydratase low > 62
Shewanella amazonensis SB2B 0.65 Sama_0260 argininosuccinate lyase (RefSeq) 0.79 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.96 8
Shewanella sp. ANA-3 0.63 Shewana3_3901 argininosuccinate lyase (RefSeq) 0.80 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.92 7
Shewanella oneidensis MR-1 0.63 SO0279 argH argininosuccinate lyase (NCBI ptt file) 0.80 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.96 13
Shewanella loihica PV-4 0.62 Shew_0206 argininosuccinate lyase (RefSeq) 0.78 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.97 22
Alteromonas macleodii MIT1002 0.57 MIT1002_00467 Argininosuccinate lyase 0.79 MIT1002_04041 Dihydroxy-acid dehydratase 0.98 13
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_854 Argininosuccinate lyase (EC 4.3.2.1) 0.75 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.71 48
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_2183 Argininosuccinate lyase (EC 4.3.2.1) 0.75 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Marinobacter adhaerens HP15 0.47 HP15_243 argininosuccinate lyase 0.70 HP15_595 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_09000 argininosuccinate lyase 0.75 AO353_08345 dihydroxy-acid dehydratase 0.73 16
Pseudomonas sp. RS175 0.47 PFR28_04367 Argininosuccinate lyase 0.75 PFR28_04278 Dihydroxy-acid dehydratase — —
Pseudomonas simiae WCS417 0.47 PS417_27540 argininosuccinate lyase 0.75 PS417_26890 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_4429 Argininosuccinate lyase (EC 4.3.2.1) 0.75 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_0065 argininosuccinate lyase 0.74 Psyr_0469 dihydroxyacid dehydratase — —
Pseudomonas sp. S08-1 0.47 OH686_13885 argininosuccinate lyase 0.75 OH686_14100 dihydroxy-acid dehydratase 0.61 59
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_12780 argininosuccinate lyase 0.75 AO356_13250 dihydroxy-acid dehydratase 0.92 6
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_0065 argininosuccinate lyase 0.74 Psyr_0469 dihydroxyacid dehydratase — —
Pseudomonas fluorescens SBW25 0.47 PFLU_RS29220 argininosuccinate lyase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS29220 argininosuccinate lyase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase — —
Pseudomonas putida KT2440 0.46 PP_0184 Argininosuccinate lyase 0.74 PP_5128 Dihydroxy-acid dehydratase 0.84 4
Pseudomonas stutzeri RCH2 0.46 Psest_3751 argininosuccinate lyase 0.75 Psest_0234 dihydroxy-acid dehydratase — —
Acinetobacter radioresistens SK82 0.45 MPMX26_00185 Argininosuccinate lyase 0.29 MPMX26_03019 Dihydroxy-acid dehydratase 0.89 27
Azospirillum sp. SherDot2 0.45 MPMX19_05817 Argininosuccinate lyase 0.74 MPMX19_05356 Dihydroxy-acid dehydratase — —
Azospirillum brasilense Sp245 0.45 AZOBR_RS16935 argininosuccinate lyase 0.74 AZOBR_RS15015 dihydroxy-acid dehydratase — —
Phaeobacter inhibens DSM 17395 0.44 PGA1_c03450 argininosuccinate lyase ArgH 0.70 PGA1_c29490 dihydroxy-acid dehydratase LivD — —
Castellaniella sp019104865 MT123 0.44 ABCV34_RS03060 argininosuccinate lyase 0.72 ABCV34_RS14810 dihydroxy-acid dehydratase — —
Dechlorosoma suillum PS 0.44 Dsui_0111 argininosuccinate lyase 0.74 Dsui_1122 dihydroxy-acid dehydratase — —
Acidovorax sp. GW101-3H11 0.44 Ac3H11_1632 Argininosuccinate lyase (EC 4.3.2.1) 0.74 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Sinorhizobium meliloti 1021 0.44 SMc00725 argininosuccinate lyase 0.75 SMc04045 dihydroxy-acid dehydratase low > 103
Rhizobium sp. OAE497 0.44 ABIE40_RS17520 argininosuccinate lyase 0.75 ABIE40_RS08005 dihydroxy-acid dehydratase — —
Agrobacterium fabrum C58 0.44 Atu3599 argininosuccinate lyase 0.73 Atu1918 dihydroxy-acid dehydratase — —
Variovorax sp. SCN45 0.44 GFF3824 Argininosuccinate lyase (EC 4.3.2.1) 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Variovorax sp. OAS795 0.44 ABID97_RS08190 argininosuccinate lyase 0.31 ABID97_RS17500 dihydroxy-acid dehydratase — —
Bosea sp. OAE506 0.44 ABIE41_RS08750 argininosuccinate lyase 0.29 ABIE41_RS15690 dihydroxy-acid dehydratase — —
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS14685 argininosuccinate lyase 0.74 HSERO_RS02650 dihydroxy-acid dehydratase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF736 Argininosuccinate lyase (EC 4.3.2.1) 0.64 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Rhodopseudomonas palustris CGA009 0.42 TX73_024645 argininosuccinate lyase 0.74 TX73_007515 dihydroxy-acid dehydratase — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS16170 argininosuccinate lyase 0.75 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Synechococcus elongatus PCC 7942 0.42 Synpcc7942_2475 argH argininosuccinate lyase 0.75 Synpcc7942_0626 ilvD dihydroxy-acid dehydratase — —
Desulfovibrio vulgaris Hildenborough JW710 0.42 DVU1094 argH argininosuccinate lyase (TIGR) 0.39 DVU3373 ilvD dihydroxy-acid dehydratase (TIGR) 0.86 24
Ralstonia solanacearum GMI1000 0.42 RS_RS11865 argininosuccinate lyase 0.28 RS_RS12105 dihydroxy-acid dehydratase — —
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS05210 argininosuccinate lyase 0.74 BPHYT_RS10100 dihydroxy-acid dehydratase — —
Dinoroseobacter shibae DFL-12 0.42 Dshi_3062 argininosuccinate lyase (RefSeq) 0.31 Dshi_0129 dihydroxy-acid dehydratase (RefSeq) — —
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_00194 argininosuccinate lyase 0.74 H281DRAFT_05312 dihydroxyacid dehydratase low > 103
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS04280 argininosuccinate lyase 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS15925 argininosuccinate lyase 0.29 RR42_RS16210 dihydroxy-acid dehydratase — —
Ralstonia solanacearum UW163 0.42 UW163_RS09390 argininosuccinate lyase 0.29 UW163_RS09135 dihydroxy-acid dehydratase — —
Paraburkholderia graminis OAS925 0.42 ABIE53_001311 argininosuccinate lyase 0.74 ABIE53_006513 dihydroxy-acid dehydratase — —
Rhodospirillum rubrum S1H 0.41 Rru_A0397 Argininosuccinate lyase (NCBI) 0.71 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) 0.91 1
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS24970 argininosuccinate lyase 0.74 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Ralstonia solanacearum PSI07 0.41 RPSI07_RS13080 argininosuccinate lyase 0.29 RPSI07_RS12840 dihydroxy-acid dehydratase — —
Desulfovibrio vulgaris Miyazaki F 0.41 DvMF_0048 argininosuccinate lyase (RefSeq) 0.39 DvMF_2034 dihydroxy-acid dehydratase (RefSeq) 0.86 27
Magnetospirillum magneticum AMB-1 0.41 AMB_RS22715 argininosuccinate lyase 0.73 AMB_RS12770 dihydroxy-acid dehydratase — —
Caulobacter crescentus NA1000 Δfur 0.40 CCNA_02294 argininosuccinate lyase 0.72 CCNA_03139 dihydroxy-acid dehydratase — —
Caulobacter crescentus NA1000 0.40 CCNA_02294 argininosuccinate lyase 0.72 CCNA_03139 dihydroxy-acid dehydratase — —
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_2049 argininosuccinate lyase 0.28 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase 0.98 4
Brevundimonas sp. GW460-12-10-14-LB2 0.39 A4249_RS12555 argininosuccinate lyase 0.25 A4249_RS10030 dihydroxy-acid dehydratase 1.00 4
Bifidobacterium breve UCC2003 0.34 BBR_RS13955 argininosuccinate lyase 0.56 BBR_RS17635 dihydroxy-acid dehydratase low > 34
Mycobacterium tuberculosis H37Rv 0.31 Rv1659 Probable argininosuccinate lyase ArgH 0.31 Rv0189c Probable dihydroxy-acid dehydratase IlvD (dad) — —
Methanococcus maripaludis S2 0.31 MMP_RS00095 argininosuccinate lyase 0.35 MMP_RS01700 dihydroxy-acid dehydratase — —
Methanococcus maripaludis JJ 0.31 MMJJ_RS05395 argininosuccinate lyase 0.35 MMJJ_RS03675 dihydroxy-acid dehydratase — —
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS18485 arginosuccinate lyase (EC 4.3.2.1) (from data) 0.27 CA265_RS15795 dihydroxy-acid dehydratase 0.93 12
Echinicola vietnamensis KMM 6221, DSM 17526 0.25 Echvi_3852 arginosuccinate lyase (EC 4.3.2.1) (from data) 0.29 Echvi_2055 dihydroxy-acid dehydratase 0.94 8
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS07095 argininosuccinate lyase 0.64 ABI39_RS12715 dihydroxy-acid dehydratase 0.85 18
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS09585 argininosuccinate lyase 0.64 HMPREF1058_RS16815 dihydroxy-acid dehydratase 0.61 53
Mucilaginibacter yixingensis YX-36 DSM 26809 0.25 ABZR88_RS12070 argininosuccinate lyase 0.27 ABZR88_RS11575 dihydroxy-acid dehydratase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.24 CA264_06225 argininosuccinate lyase 0.28 CA264_06935 dihydroxy-acid dehydratase low > 74
Bacteroides ovatus ATCC 8483 0.24 BACOVA_03551 argininosuccinate lyase 0.62 BACOVA_03302 dihydroxy-acid dehydratase 0.94 15
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS03410 argininosuccinate lyase 0.64 HMPREF1181_RS08335 dihydroxy-acid dehydratase 0.87 43
Lysobacter sp. OAE881 0.22 ABIE51_RS13380 argininosuccinate lyase 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase 0.95 3
Rhodanobacter denitrificans FW104-10B01 0.20 LRK54_RS02380 argininosuccinate lyase 0.26 LRK54_RS10320 dihydroxy-acid dehydratase low > 59
Rhodanobacter denitrificans MT42 0.20 LRK55_RS02135 argininosuccinate lyase 0.26 LRK55_RS09960 dihydroxy-acid dehydratase low > 63
Rhodanobacter sp. FW510-T8 0.20 OKGIIK_09430 argH argininosuccinate lyase 0.27 OKGIIK_13600 ilvD dihydroxy-acid dehydratase low > 52
Dyella japonica UNC79MFTsu3.2 0.20 ABZR86_RS08695 arginosuccinate lyase (EC 4.3.2.1) (from data) 0.28 ABZR86_RS15945 dihydroxy-acid dehydratase 0.92 44
Xanthomonas campestris pv. campestris strain 8004 0.19 Xcc-8004.2323.1 Argininosuccinate lyase (EC 4.3.2.1) 0.72 Xcc-8004.451.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.90 15

Not shown: 1 genomes with orthologs for b3960 only; 2 genomes with orthologs for b3771 only