Conservation of cofitness between b2838 and b3771 in Escherichia coli BW25113

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 1.0 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.93 6
Escherichia coli BL21 1.00 ECD_02686 diaminopimelate decarboxylase, PLP-binding 1.00 ECD_03649 dihydroxyacid dehydratase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00891 Diaminopimelate decarboxylase 1.00 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli ECOR27 1.00 NOLOHH_11830 lysA diaminopimelate decarboxylase 1.00 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 57
Escherichia coli ECOR38 1.00 HEPCGN_19565 lysA diaminopimelate decarboxylase 1.00 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 85
Escherichia coli ECRC99 1.00 KEDOAH_08185 lysA diaminopimelate decarboxylase 1.00 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS15930 diaminopimelate decarboxylase 0.99 ECOLIN_RS21665 dihydroxy-acid dehydratase 0.44 40
Escherichia coli ECRC62 1.00 BNILDI_10310 lysA diaminopimelate decarboxylase 1.00 BNILDI_04750 ilvD dihydroxy-acid dehydratase — —
Escherichia fergusonii Becca 1.00 EFB2_01045 Diaminopimelate decarboxylase 0.99 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Escherichia coli ECRC102 0.99 NIAGMN_17715 lysA diaminopimelate decarboxylase 1.00 NIAGMN_12395 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 0.99 OKFHMN_19945 lysA diaminopimelate decarboxylase 1.00 OKFHMN_14640 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 0.99 MCAODC_10470 lysA diaminopimelate decarboxylase 1.00 MCAODC_05145 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC98 0.99 JDDGAC_23610 lysA diaminopimelate decarboxylase 1.00 JDDGAC_18260 ilvD dihydroxy-acid dehydratase — —
Enterobacter sp. TBS_079 0.90 MPMX20_03705 Diaminopimelate decarboxylase 0.97 MPMX20_04499 Dihydroxy-acid dehydratase 0.81 28
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.97 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Enterobacter asburiae PDN3 0.88 EX28DRAFT_2916 diaminopimelate decarboxylase 0.96 EX28DRAFT_4443 dihydroxy-acid dehydratase 0.70 48
Klebsiella michiganensis M5al 0.88 BWI76_RS23360 diaminopimelate decarboxylase 0.96 BWI76_RS00975 dihydroxy-acid dehydratase 0.83 4
Serratia liquefaciens MT49 0.78 IAI46_20520 diaminopimelate decarboxylase 0.90 IAI46_24345 dihydroxy-acid dehydratase 0.69 14
Pectobacterium carotovorum WPP14 0.77 HER17_RS03710 diaminopimelate decarboxylase 0.91 HER17_RS01075 dihydroxy-acid dehydratase 0.95 9
Erwinia tracheiphila SCR3 0.76 LU632_RS06040 lysA diaminopimelate decarboxylase 0.86 LU632_RS24400 ilvD dihydroxy-acid dehydratase 0.82 10
Dickeya dadantii 3937 0.75 DDA3937_RS17425 diaminopimelate decarboxylase 0.92 DDA3937_RS20155 dihydroxy-acid dehydratase 0.90 3
Rahnella sp. WP5 0.75 EX31_RS13275 diaminopimelate decarboxylase 0.87 EX31_RS15005 dihydroxy-acid dehydratase 0.97 2
Dickeya dianthicola ME23 0.75 DZA65_RS18550 diaminopimelate decarboxylase 0.91 DZA65_RS21335 dihydroxy-acid dehydratase 0.70 27
Pantoea sp. MT58 0.75 IAI47_03860 diaminopimelate decarboxylase 0.89 IAI47_01035 dihydroxy-acid dehydratase 0.97 1
Dickeya dianthicola 67-19 0.74 HGI48_RS17485 diaminopimelate decarboxylase 0.91 HGI48_RS20295 dihydroxy-acid dehydratase 0.78 40
Acidovorax sp. GW101-3H11 0.65 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.74 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS35090 diaminopimelate decarboxylase 0.74 BPHYT_RS10100 dihydroxy-acid dehydratase low > 109
Pseudomonas putida KT2440 0.57 PP_2077 diaminopimelate decarboxylase 0.74 PP_5128 Dihydroxy-acid dehydratase low > 96
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.29 Echvi_2055 dihydroxy-acid dehydratase 0.94 2
Desulfovibrio vulgaris Hildenborough JW710 0.26 DVU2566 lysA-2 diaminopimelate decarboxylase (TIGR) 0.39 DVU3373 ilvD dihydroxy-acid dehydratase (TIGR) low > 55
Lysobacter sp. OAE881 0.26 ABIE51_RS13675 diaminopimelate decarboxylase 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase low > 62
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_1010 diaminopimelate decarboxylase (RefSeq) 0.39 DvMF_2034 dihydroxy-acid dehydratase (RefSeq) low > 51
Rhodanobacter denitrificans MT42 0.25 LRK55_RS11215 diaminopimelate decarboxylase 0.26 LRK55_RS09960 dihydroxy-acid dehydratase low > 63
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS11485 diaminopimelate decarboxylase 0.26 LRK54_RS10320 dihydroxy-acid dehydratase low > 59
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS12130 diaminopimelate decarboxylase 0.28 ABZR86_RS15945 dihydroxy-acid dehydratase low > 74
Rhodanobacter sp. FW510-T8 0.24 OKGIIK_12375 lysA diaminopimelate decarboxylase 0.27 OKGIIK_13600 ilvD dihydroxy-acid dehydratase 0.51 20
Caulobacter crescentus NA1000 0.23 CCNA_02296 diaminopimelate decarboxylase 0.72 CCNA_03139 dihydroxy-acid dehydratase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS12545 diaminopimelate decarboxylase 0.25 A4249_RS10030 dihydroxy-acid dehydratase 0.99 17
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_02296 diaminopimelate decarboxylase 0.72 CCNA_03139 dihydroxy-acid dehydratase — —
Bosea sp. OAE506 0.23 ABIE41_RS08740 diaminopimelate decarboxylase 0.29 ABIE41_RS15690 dihydroxy-acid dehydratase — —
Rhodopseudomonas palustris CGA009 0.22 TX73_024635 diaminopimelate decarboxylase 0.74 TX73_007515 dihydroxy-acid dehydratase — —
Sphingomonas koreensis DSMZ 15582 0.22 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.28 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase 0.99 3
Phaeobacter inhibens DSM 17395 0.22 PGA1_c03470 diaminopimelate decarboxylase LysA 0.70 PGA1_c29490 dihydroxy-acid dehydratase LivD — —
Azospirillum sp. SherDot2 0.22 MPMX19_05819 Diaminopimelate decarboxylase 0.74 MPMX19_05356 Dihydroxy-acid dehydratase — —
Pseudomonas fluorescens FW300-N2E3 0.22 AO353_09035 diaminopimelate decarboxylase 0.75 AO353_08345 dihydroxy-acid dehydratase — —
Rhodospirillum rubrum S1H 0.22 Rru_A0396 Diaminopimelate decarboxylase (NCBI) 0.71 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) — —
Magnetospirillum magneticum AMB-1 0.21 AMB_RS22725 diaminopimelate decarboxylase 0.73 AMB_RS12770 dihydroxy-acid dehydratase — —
Pseudomonas sp. RS175 0.21 PFR28_04375 Diaminopimelate decarboxylase 0.75 PFR28_04278 Dihydroxy-acid dehydratase — —
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.75 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.83 37
Pseudomonas syringae pv. syringae B728a ΔmexB 0.21 Psyr_0182 diaminopimelate decarboxylase 0.74 Psyr_0469 dihydroxyacid dehydratase — —
Pseudomonas fluorescens FW300-N1B4 0.21 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.75 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Pseudomonas syringae pv. syringae B728a 0.21 Psyr_0182 diaminopimelate decarboxylase 0.74 Psyr_0469 dihydroxyacid dehydratase — —
Dechlorosoma suillum PS 0.21 Dsui_1182 diaminopimelate decarboxylase 0.74 Dsui_1122 dihydroxy-acid dehydratase — —
Dinoroseobacter shibae DFL-12 0.21 Dshi_3059 diaminopimelate decarboxylase (RefSeq) 0.31 Dshi_0129 dihydroxy-acid dehydratase (RefSeq) — —
Pseudomonas simiae WCS417 0.21 PS417_27580 diaminopimelate decarboxylase 0.75 PS417_26890 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.75 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS29265 diaminopimelate decarboxylase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens SBW25 0.21 PFLU_RS29265 diaminopimelate decarboxylase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas fluorescens FW300-N2C3 0.20 AO356_12740 diaminopimelate decarboxylase 0.75 AO356_13250 dihydroxy-acid dehydratase — —
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS19050 diaminopimelate decarboxylase 0.29 RR42_RS16210 dihydroxy-acid dehydratase — —
Azospirillum brasilense Sp245 0.20 AZOBR_RS16945 diaminopimelate decarboxylase 0.74 AZOBR_RS15015 dihydroxy-acid dehydratase — —
Ralstonia sp. UNC404CL21Col 0.20 ABZR87_RS02640 diaminopimelate decarboxylase 0.75 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Pseudomonas stutzeri RCH2 0.20 Psest_3764 diaminopimelate decarboxylase 0.75 Psest_0234 dihydroxy-acid dehydratase — —
Pseudomonas sp. S08-1 0.20 OH686_13800 diaminopimelate decarboxylase 0.75 OH686_14100 dihydroxy-acid dehydratase low > 80
Ralstonia solanacearum PSI07 0.20 RPSI07_RS10250 diaminopimelate decarboxylase 0.29 RPSI07_RS12840 dihydroxy-acid dehydratase — —
Rhizobium sp. OAE497 0.20 ABIE40_RS17530 diaminopimelate decarboxylase 0.75 ABIE40_RS08005 dihydroxy-acid dehydratase 0.91 44
Ralstonia solanacearum UW163 0.20 UW163_RS06625 diaminopimelate decarboxylase 0.29 UW163_RS09135 dihydroxy-acid dehydratase — —
Agrobacterium fabrum C58 0.20 Atu3601 diaminopimelate decarboxylase 0.73 Atu1918 dihydroxy-acid dehydratase — —
Ralstonia solanacearum IBSBF1503 0.20 RALBFv3_RS06990 diaminopimelate decarboxylase 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase — —
Ralstonia solanacearum GMI1000 0.20 RS_RS14930 diaminopimelate decarboxylase 0.28 RS_RS12105 dihydroxy-acid dehydratase — —
Shewanella amazonensis SB2B 0.20 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.79 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.98 1
Hydrogenophaga sp. GW460-11-11-14-LB1 0.19 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.64 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 90
Shewanella sp. ANA-3 0.19 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.80 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.99 1
Marinobacter adhaerens HP15 0.19 HP15_247 diaminopimelate decarboxylase 0.70 HP15_595 dihydroxy-acid dehydratase — —
Sinorhizobium meliloti 1021 0.19 SMc00723 diaminopimelate DAP decarboxylase 0.75 SMc04045 dihydroxy-acid dehydratase — —
Methanococcus maripaludis JJ 0.19 MMJJ_RS08170 diaminopimelate decarboxylase 0.35 MMJJ_RS03675 dihydroxy-acid dehydratase — —
Paraburkholderia graminis OAS925 0.19 ABIE53_003749 diaminopimelate decarboxylase 0.74 ABIE53_006513 dihydroxy-acid dehydratase low > 113
Methanococcus maripaludis S2 0.19 MMP_RS06180 diaminopimelate decarboxylase 0.35 MMP_RS01700 dihydroxy-acid dehydratase — —
Paraburkholderia sabiae LMG 24235 0.19 QEN71_RS28080 diaminopimelate decarboxylase 0.74 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Herbaspirillum seropedicae SmR1 0.19 HSERO_RS00950 diaminopimelate decarboxylase 0.74 HSERO_RS02650 dihydroxy-acid dehydratase — —
Acinetobacter radioresistens SK82 0.19 MPMX26_02232 Diaminopimelate decarboxylase 0.29 MPMX26_03019 Dihydroxy-acid dehydratase 0.93 1
Shewanella oneidensis MR-1 0.19 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.80 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.99 4
Shewanella loihica PV-4 0.18 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.78 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.98 4
Variovorax sp. SCN45 0.18 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Vibrio cholerae E7946 ATCC 55056 0.18 CSW01_00635 diaminopimelate decarboxylase 0.85 CSW01_00140 dihydroxy-acid dehydratase low > 62
Pontibacter actiniarum KMM 6156, DSM 19842 0.18 CA264_02390 diaminopimelate decarboxylase 0.28 CA264_06935 dihydroxy-acid dehydratase low > 74
Castellaniella sp019104865 MT123 0.18 ABCV34_RS12685 diaminopimelate decarboxylase 0.72 ABCV34_RS14810 dihydroxy-acid dehydratase — —
Paraburkholderia bryophila 376MFSha3.1 0.18 H281DRAFT_05606 diaminopimelate decarboxylase 0.74 H281DRAFT_05312 dihydroxyacid dehydratase — —
Bacteroides stercoris CC31F 0.18 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.64 HMPREF1181_RS08335 dihydroxy-acid dehydratase 0.88 41
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS09650 diaminopimelate decarboxylase 0.27 CA265_RS15795 dihydroxy-acid dehydratase 0.90 3
Variovorax sp. OAS795 0.18 ABID97_RS23305 diaminopimelate decarboxylase 0.31 ABID97_RS17500 dihydroxy-acid dehydratase — —
Parabacteroides merdae CL09T00C40 0.18 HMPREF1078_RS13545 diaminopimelate decarboxylase 0.65 HMPREF1078_RS16695 dihydroxy-acid dehydratase low > 61
Bacteroides thetaiotaomicron VPI-5482 0.17 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.63 BT2078 dihydroxy-acid dehydratase (NCBI ptt file) 0.52 47
Phocaeicola dorei CL03T12C01 0.17 ABI39_RS19950 diaminopimelate decarboxylase 0.64 ABI39_RS12715 dihydroxy-acid dehydratase 0.69 9
Phocaeicola vulgatus CL09T03C04 0.17 HMPREF1058_RS06195 diaminopimelate decarboxylase 0.64 HMPREF1058_RS16815 dihydroxy-acid dehydratase low > 67
Bacteroides ovatus ATCC 8483 0.17 BACOVA_00215 diaminopimelate decarboxylase 0.62 BACOVA_03302 dihydroxy-acid dehydratase 0.97 5
Mucilaginibacter yixingensis YX-36 DSM 26809 0.16 ABZR88_RS10180 diaminopimelate decarboxylase 0.27 ABZR88_RS11575 dihydroxy-acid dehydratase — —
Alteromonas macleodii MIT1002 0.16 MIT1002_00160 Diaminopimelate decarboxylase 0.79 MIT1002_04041 Dihydroxy-acid dehydratase 0.79 37
Synechococcus elongatus PCC 7942 0.15 Synpcc7942_0262 lysA diaminopimelate decarboxylase 0.75 Synpcc7942_0626 ilvD dihydroxy-acid dehydratase — —
Mycobacterium tuberculosis H37Rv 0.15 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) 0.31 Rv0189c Probable dihydroxy-acid dehydratase IlvD (dad) — —

Not shown: 0 genomes with orthologs for b2838 only; 2 genomes with orthologs for b3771 only