Conservation of cofitness between b2838 and b3770 in Escherichia coli BW25113

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 1.0 b3770 ilvE branched-chain amino acid aminotransferase (NCBI) 0.91 19
Escherichia coli BL21 1.00 ECD_02686 diaminopimelate decarboxylase, PLP-binding 1.00 ECD_03648 branched-chain amino acid aminotransferase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00891 Diaminopimelate decarboxylase 1.00 OHPLBJKB_04283 Branched-chain-amino-acid aminotransferase low > 73
Escherichia coli ECOR27 1.00 NOLOHH_11830 lysA diaminopimelate decarboxylase 1.00 NOLOHH_06780 ilvE branched-chain-amino-acid transaminase low > 57
Escherichia coli ECOR38 1.00 HEPCGN_19565 lysA diaminopimelate decarboxylase 1.00 HEPCGN_13355 ilvE branched-chain-amino-acid transaminase low > 85
Escherichia coli ECRC99 1.00 KEDOAH_08185 lysA diaminopimelate decarboxylase 1.00 KEDOAH_13505 ilvE branched-chain-amino-acid transaminase — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS15930 diaminopimelate decarboxylase 1.00 ECOLIN_RS21660 branched-chain-amino-acid transaminase low > 52
Escherichia coli ECRC62 1.00 BNILDI_10310 lysA diaminopimelate decarboxylase 1.00 BNILDI_04745 ilvE branched-chain-amino-acid transaminase — —
Escherichia fergusonii Becca 1.00 EFB2_01045 Diaminopimelate decarboxylase 1.00 EFB2_04866 Branched-chain-amino-acid aminotransferase low > 86
Escherichia coli ECRC102 0.99 NIAGMN_17715 lysA diaminopimelate decarboxylase 1.00 NIAGMN_12400 ilvE branched-chain-amino-acid transaminase — —
Escherichia coli ECRC101 0.99 OKFHMN_19945 lysA diaminopimelate decarboxylase 1.00 OKFHMN_14645 ilvE branched-chain-amino-acid transaminase — —
Escherichia coli ECRC101 0.99 MCAODC_10470 lysA diaminopimelate decarboxylase 1.00 MCAODC_05150 ilvE branched-chain-amino-acid transaminase — —
Escherichia coli ECRC98 0.99 JDDGAC_23610 lysA diaminopimelate decarboxylase 1.00 JDDGAC_18265 ilvE branched-chain-amino-acid transaminase — —
Enterobacter sp. TBS_079 0.90 MPMX20_03705 Diaminopimelate decarboxylase 0.99 MPMX20_04500 Branched-chain-amino-acid aminotransferase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.98 GFF2902 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 78
Enterobacter asburiae PDN3 0.88 EX28DRAFT_2916 diaminopimelate decarboxylase 0.98 EX28DRAFT_4442 branched-chain amino acid aminotransferase, group I 0.69 50
Klebsiella michiganensis M5al 0.88 BWI76_RS23360 diaminopimelate decarboxylase 0.97 BWI76_RS00970 branched chain amino acid aminotransferase 0.49 86
Serratia liquefaciens MT49 0.78 IAI46_20520 diaminopimelate decarboxylase 0.92 IAI46_24350 branched-chain-amino-acid transaminase low > 86
Pectobacterium carotovorum WPP14 0.77 HER17_RS03710 diaminopimelate decarboxylase 0.90 HER17_RS01070 branched-chain amino acid transaminase low > 75
Erwinia tracheiphila SCR3 0.76 LU632_RS06040 lysA diaminopimelate decarboxylase 0.90 LU632_RS24405 branched-chain amino acid transaminase 0.87 1
Dickeya dadantii 3937 0.75 DDA3937_RS17425 diaminopimelate decarboxylase 0.91 DDA3937_RS20160 branched-chain-amino-acid transaminase 0.77 53
Rahnella sp. WP5 0.75 EX31_RS13275 diaminopimelate decarboxylase 0.90 EX31_RS15000 branched-chain amino acid transaminase 0.89 64
Dickeya dianthicola ME23 0.75 DZA65_RS18550 diaminopimelate decarboxylase 0.91 DZA65_RS21340 branched-chain amino acid transaminase 0.64 41
Pantoea sp. MT58 0.75 IAI47_03860 diaminopimelate decarboxylase 0.91 IAI47_01030 branched-chain amino acid transaminase 0.96 4
Dickeya dianthicola 67-19 0.74 HGI48_RS17485 diaminopimelate decarboxylase 0.90 HGI48_RS20300 branched-chain-amino-acid transaminase low > 71
Acidovorax sp. GW101-3H11 0.65 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.46 Ac3H11_3369 Branched-chain amino acid aminotransferase (EC 2.6.1.42) — —
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS35090 diaminopimelate decarboxylase 0.43 BPHYT_RS16285 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) low > 109
Pseudomonas putida KT2440 0.57 PP_2077 diaminopimelate decarboxylase 0.19 PP_3511 Branched-chain-amino-acid aminotransferase low > 96
Desulfovibrio vulgaris Hildenborough JW710 0.26 DVU2566 lysA-2 diaminopimelate decarboxylase (TIGR) 0.46 DVU3197 ilvE branched-chain amino acid aminotransferase (TIGR) low > 55
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.18 Echvi_2202 branched-chain amino acid aminotransferase, group II low > 79
Lysobacter sp. OAE881 0.26 ABIE51_RS13675 diaminopimelate decarboxylase 0.55 ABIE51_RS16505 branched-chain amino acid transaminase low > 62
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_1010 diaminopimelate decarboxylase (RefSeq) 0.46 DvMF_2268 branched-chain amino acid aminotransferase (RefSeq) low > 51
Rhodanobacter denitrificans MT42 0.25 LRK55_RS11215 diaminopimelate decarboxylase 0.56 LRK55_RS11755 branched-chain amino acid transaminase low > 63
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS11485 diaminopimelate decarboxylase 0.56 LRK54_RS12020 branched-chain amino acid transaminase low > 59
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS12130 diaminopimelate decarboxylase 0.56 ABZR86_RS15965 branched-chain amino acid transaminase low > 74
Rhodanobacter sp. FW510-T8 0.24 OKGIIK_12375 lysA diaminopimelate decarboxylase 0.56 OKGIIK_11840 ilvE branched-chain amino acid transaminase low > 52
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS12545 diaminopimelate decarboxylase 0.27 A4249_RS09820 branched-chain amino acid aminotransferase — —
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_02296 diaminopimelate decarboxylase 0.31 CCNA_03024 branched-chain amino acid aminotransferase — —
Caulobacter crescentus NA1000 0.23 CCNA_02296 diaminopimelate decarboxylase 0.31 CCNA_03024 branched-chain amino acid aminotransferase — —
Bosea sp. OAE506 0.23 ABIE41_RS08740 diaminopimelate decarboxylase 0.28 ABIE41_RS11405 branched-chain amino acid aminotransferase — —
Rhodopseudomonas palustris CGA009 0.22 TX73_024635 diaminopimelate decarboxylase 0.18 TX73_022650 branched-chain amino acid aminotransferase — —
Sphingomonas koreensis DSMZ 15582 0.22 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.23 Ga0059261_3811 branched-chain amino acid aminotransferase, group II 0.99 5
Phaeobacter inhibens DSM 17395 0.22 PGA1_c03470 diaminopimelate decarboxylase LysA 0.29 PGA1_c34110 branched-chain-amino-acid aminotransferase IlvE — —
Azospirillum sp. SherDot2 0.22 MPMX19_05819 Diaminopimelate decarboxylase 0.18 MPMX19_02406 Branched-chain-amino-acid aminotransferase — —
Pseudomonas fluorescens FW300-N2E3 0.22 AO353_09035 diaminopimelate decarboxylase 0.20 AO353_26655 branched-chain amino acid aminotransferase — —
Rhodospirillum rubrum S1H 0.22 Rru_A0396 Diaminopimelate decarboxylase (NCBI) 0.32 Rru_A2223 Branched-chain amino acid aminotransferase I (NCBI) — —
Pseudomonas syringae pv. syringae B728a 0.21 Psyr_0182 diaminopimelate decarboxylase 0.22 Psyr_1148 branched chain amino acid aminotransferase apoenzyme — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.21 Psyr_0182 diaminopimelate decarboxylase 0.22 Psyr_1148 branched chain amino acid aminotransferase apoenzyme — —
Pseudomonas sp. RS175 0.21 PFR28_04375 Diaminopimelate decarboxylase 0.21 PFR28_02449 putative branched-chain-amino-acid aminotransferase — —
Pseudomonas fluorescens FW300-N1B4 0.21 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.22 Pf1N1B4_4476 Branched-chain amino acid aminotransferase (EC 2.6.1.42) — —
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.27 PfGW456L13_4923 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 87
Magnetospirillum magneticum AMB-1 0.21 AMB_RS22725 diaminopimelate decarboxylase 0.31 AMB_RS02850 branched-chain amino acid aminotransferase — —
Dechlorosoma suillum PS 0.21 Dsui_1182 diaminopimelate decarboxylase 0.47 Dsui_2030 branched-chain amino acid aminotransferase, group I — —
Dinoroseobacter shibae DFL-12 0.21 Dshi_3059 diaminopimelate decarboxylase (RefSeq) 0.26 Dshi_3301 branched-chain amino acid aminotransferase (RefSeq) — —
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS29265 diaminopimelate decarboxylase 0.21 PFLU_RS19375 branched-chain amino acid aminotransferase — —
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.21 Pf6N2E2_477 Branched-chain amino acid aminotransferase (EC 2.6.1.42) — —
Pseudomonas fluorescens SBW25 0.21 PFLU_RS29265 diaminopimelate decarboxylase 0.21 PFLU_RS19375 branched-chain amino acid aminotransferase low > 109
Pseudomonas simiae WCS417 0.21 PS417_27580 diaminopimelate decarboxylase 0.21 PS417_17565 branched-chain amino acid aminotransferase — —
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS19050 diaminopimelate decarboxylase 0.20 RR42_RS25890 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) — —
Pseudomonas fluorescens FW300-N2C3 0.20 AO356_12740 diaminopimelate decarboxylase 0.21 AO356_22970 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) — —
Azospirillum brasilense Sp245 0.20 AZOBR_RS16945 diaminopimelate decarboxylase 0.31 AZOBR_RS16425 branched-chain amino acid aminotransferase — —
Ralstonia sp. UNC404CL21Col 0.20 ABZR87_RS02640 diaminopimelate decarboxylase 0.25 ABZR87_RS18540 branched-chain amino acid aminotransferase low > 80
Pseudomonas stutzeri RCH2 0.20 Psest_3764 diaminopimelate decarboxylase 0.46 Psest_0450 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) — —
Pseudomonas sp. S08-1 0.20 OH686_13800 diaminopimelate decarboxylase 0.46 OH686_09695 branched-chain amino acid aminotransferase low > 80
Ralstonia solanacearum PSI07 0.20 RPSI07_RS10250 diaminopimelate decarboxylase 0.45 RPSI07_RS21175 branched-chain amino acid transaminase — —
Rhizobium sp. OAE497 0.20 ABIE40_RS17530 diaminopimelate decarboxylase 0.19 ABIE40_RS22240 branched-chain amino acid aminotransferase low > 107
Shewanella amazonensis SB2B 0.20 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.19 Sama_3299 branched-chain amino acid aminotransferase (RefSeq) low > 62
Ralstonia solanacearum IBSBF1503 0.20 RALBFv3_RS06990 diaminopimelate decarboxylase 0.46 RALBFv3_RS12155 branched-chain amino acid transaminase — —
Ralstonia solanacearum GMI1000 0.20 RS_RS14930 diaminopimelate decarboxylase 0.45 RS_RS02840 branched-chain amino acid transaminase — —
Agrobacterium fabrum C58 0.20 Atu3601 diaminopimelate decarboxylase 0.18 Atu0871 branched-chain-amino-acid aminotransferase — —
Ralstonia solanacearum UW163 0.20 UW163_RS06625 diaminopimelate decarboxylase 0.46 UW163_RS01455 branched-chain amino acid transaminase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.19 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.46 GFF1835 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 90
Marinobacter adhaerens HP15 0.19 HP15_247 diaminopimelate decarboxylase 0.43 HP15_436 branched-chain-amino-acid aminotransferase — —
Shewanella sp. ANA-3 0.19 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.19 Shewana3_3830 branched-chain amino acid aminotransferase (RefSeq) low > 73
Methanococcus maripaludis JJ 0.19 MMJJ_RS08170 diaminopimelate decarboxylase 0.31 MMJJ_RS04725 branched-chain-amino-acid transaminase low > 28
Sinorhizobium meliloti 1021 0.19 SMc00723 diaminopimelate DAP decarboxylase 0.21 SMc02896 branched-chain amino acid aminotransferase — —
Paraburkholderia graminis OAS925 0.19 ABIE53_003749 diaminopimelate decarboxylase 0.43 ABIE53_003432 branched-chain amino acid aminotransferase low > 113
Methanococcus maripaludis S2 0.19 MMP_RS06180 diaminopimelate decarboxylase 0.31 MMP_RS00760 branched-chain-amino-acid transaminase — —
Paraburkholderia sabiae LMG 24235 0.19 QEN71_RS28080 diaminopimelate decarboxylase 0.44 QEN71_RS02410 branched-chain amino acid transaminase low > 153
Acinetobacter radioresistens SK82 0.19 MPMX26_02232 Diaminopimelate decarboxylase 0.40 MPMX26_00445 Branched-chain-amino-acid aminotransferase 0.83 19
Herbaspirillum seropedicae SmR1 0.19 HSERO_RS00950 diaminopimelate decarboxylase 0.44 HSERO_RS03330 branched-chain amino acid aminotransferase — —
Shewanella oneidensis MR-1 0.19 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.19 SO0340 ilvE branched-chain amino acid aminotransferase (NCBI ptt file) 0.87 70
Pontibacter actiniarum KMM 6156, DSM 19842 0.18 CA264_02390 diaminopimelate decarboxylase 0.32 CA264_06940 branched-chain amino acid aminotransferase low > 74
Variovorax sp. SCN45 0.18 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.44 GFF5079 Branched-chain amino acid aminotransferase (EC 2.6.1.42) — —
Vibrio cholerae E7946 ATCC 55056 0.18 CSW01_00635 diaminopimelate decarboxylase 0.75 CSW01_00145 branched-chain-amino-acid transaminase low > 62
Shewanella loihica PV-4 0.18 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.68 Shew_0291 branched-chain amino acid aminotransferase (RefSeq) 0.92 36
Castellaniella sp019104865 MT123 0.18 ABCV34_RS12685 diaminopimelate decarboxylase 0.45 ABCV34_RS07930 branched-chain amino acid transaminase — —
Paraburkholderia bryophila 376MFSha3.1 0.18 H281DRAFT_05606 diaminopimelate decarboxylase 0.43 H281DRAFT_04193 branched chain amino acid aminotransferase apoenzyme — —
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS09650 diaminopimelate decarboxylase 0.29 CA265_RS15785 branched-chain-amino-acid transaminase low > 88
Bacteroides stercoris CC31F 0.18 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.19 HMPREF1181_RS06865 branched-chain amino acid aminotransferase low > 56
Variovorax sp. OAS795 0.18 ABID97_RS23305 diaminopimelate decarboxylase 0.44 ABID97_RS03790 branched-chain amino acid transaminase — —
Parabacteroides merdae CL09T00C40 0.18 HMPREF1078_RS13545 diaminopimelate decarboxylase 0.19 HMPREF1078_RS07855 branched-chain amino acid aminotransferase low > 61
Bacteroides thetaiotaomicron VPI-5482 0.17 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.19 BT3892 branched-chain amino acid aminotransferase (NCBI ptt file) — —
Phocaeicola dorei CL03T12C01 0.17 ABI39_RS19950 diaminopimelate decarboxylase 0.18 ABI39_RS01415 branched-chain amino acid aminotransferase 0.78 1
Phocaeicola vulgatus CL09T03C04 0.17 HMPREF1058_RS06195 diaminopimelate decarboxylase 0.18 HMPREF1058_RS02220 branched-chain amino acid aminotransferase low > 67
Bacteroides ovatus ATCC 8483 0.17 BACOVA_00215 diaminopimelate decarboxylase 0.30 BACOVA_03679 branched-chain-amino-acid transaminase low > 94
Mucilaginibacter yixingensis YX-36 DSM 26809 0.16 ABZR88_RS10180 diaminopimelate decarboxylase 0.16 ABZR88_RS22095 branched-chain amino acid aminotransferase — —
Alteromonas macleodii MIT1002 0.16 MIT1002_00160 Diaminopimelate decarboxylase 0.17 MIT1002_00377 Branched-chain-amino-acid aminotransferase 2 0.75 55
Synechococcus elongatus PCC 7942 0.15 Synpcc7942_0262 lysA diaminopimelate decarboxylase 0.29 Synpcc7942_1029 ilvE branched-chain amino acid aminotransferase — —
Mycobacterium tuberculosis H37Rv 0.15 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) 0.19 Rv2210c Branched-chain amino acid transaminase IlvE — —

Not shown: 0 genomes with orthologs for b2838 only; 3 genomes with orthologs for b3770 only