Conservation of cofitness between b4389 and b2616 in Escherichia coli BW25113

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b4389 radA predicted repair protein (NCBI) 1.0 b2616 recN recombination and repair protein (NCBI) 0.55 2
Escherichia coli Nissle 1917 1.00 ECOLIN_RS25190 DNA repair protein RadA 0.99 ECOLIN_RS14775 DNA repair protein RecN low > 52
Escherichia coli BL21 1.00 ECD_04265 DNA repair protein 1.00 ECD_02504 recombination and repair protein low > 60
Escherichia fergusonii Becca 1.00 EFB2_04057 DNA repair protein RadA 0.99 EFB2_01277 DNA repair protein RecN low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03672 DNA repair protein RadA 1.00 OHPLBJKB_01091 DNA repair protein RecN low > 73
Escherichia coli ECRC98 1.00 JDDGAC_14790 radA DNA repair protein RadA 0.99 JDDGAC_24810 recN DNA repair protein RecN — —
Escherichia coli ECRC101 1.00 MCAODC_01710 radA DNA repair protein RadA 0.99 MCAODC_11670 recN DNA repair protein RecN — —
Escherichia coli ECRC102 1.00 NIAGMN_09045 radA DNA repair protein RadA 0.99 NIAGMN_18915 recN DNA repair protein RecN — —
Escherichia coli ECOR27 1.00 NOLOHH_03520 radA DNA repair protein RadA 1.00 NOLOHH_12815 recN DNA repair protein RecN low > 57
Escherichia coli ECRC62 1.00 BNILDI_08075 radA DNA repair protein RadA 1.00 BNILDI_11620 recN DNA repair protein RecN — —
Escherichia coli ECRC101 1.00 OKFHMN_11195 radA DNA repair protein RadA 0.99 OKFHMN_21145 recN DNA repair protein RecN — —
Escherichia coli ECRC99 1.00 KEDOAH_16960 radA DNA repair protein RadA 0.99 KEDOAH_07075 recN DNA repair protein RecN — —
Escherichia coli ECOR38 0.99 HEPCGN_09195 radA DNA repair protein RadA 0.99 HEPCGN_20265 recN DNA repair protein RecN low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.98 GFF1057 DNA repair protein RadA 0.92 GFF4162 DNA repair protein RecN low > 78
Enterobacter sp. TBS_079 0.97 MPMX20_00694 DNA repair protein RadA 0.85 MPMX20_03486 DNA repair protein RecN low > 85
Klebsiella michiganensis M5al 0.97 BWI76_RS04165 DNA repair protein RadA 0.84 BWI76_RS21560 DNA repair protein RecN low > 92
Enterobacter asburiae PDN3 0.97 EX28DRAFT_3597 DNA repair protein RadA 0.86 EX28DRAFT_2719 DNA repair protein RecN low > 76
Erwinia tracheiphila SCR3 0.94 LU632_RS02550 radA DNA repair protein RadA 0.73 LU632_RS16985 recN DNA repair protein RecN low > 74
Rahnella sp. WP5 0.94 EX31_RS04030 DNA repair protein RadA 0.75 EX31_RS21760 DNA repair protein RecN low > 89
Serratia liquefaciens MT49 0.93 IAI46_02945 DNA repair protein RadA 0.77 IAI46_19635 DNA repair protein RecN low > 86
Pantoea sp. MT58 0.93 IAI47_16345 DNA repair protein RadA 0.77 IAI47_04810 DNA repair protein RecN low > 76
Pectobacterium carotovorum WPP14 0.90 HER17_RS19085 DNA repair protein RadA 0.72 HER17_RS17420 DNA repair protein RecN low > 75
Dickeya dianthicola ME23 0.88 DZA65_RS02485 DNA repair protein RadA 0.72 DZA65_RS04235 DNA repair protein RecN low > 75
Dickeya dianthicola 67-19 0.87 HGI48_RS02380 DNA repair protein RadA 0.72 HGI48_RS04320 DNA repair protein RecN low > 71
Dickeya dadantii 3937 0.87 DDA3937_RS02420 DNA repair protein RadA 0.73 DDA3937_RS04325 DNA repair protein RecN low > 74
Vibrio cholerae E7946 ATCC 55056 0.80 CSW01_11870 DNA repair protein RadA 0.53 CSW01_04395 DNA repair protein RecN low > 62
Shewanella oneidensis MR-1 0.77 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.55 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.57 4
Shewanella sp. ANA-3 0.77 Shewana3_1049 DNA repair protein RadA (RefSeq) 0.55 Shewana3_1104 recombination and repair protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.75 Sama_0981 DNA repair protein RadA (RefSeq) 0.54 Sama_1026 recombination and repair protein (RefSeq) 0.68 4
Alteromonas macleodii MIT1002 0.73 MIT1002_02706 Lon protease 2 0.43 MIT1002_01443 Recombination protein N low > 70
Marinobacter adhaerens HP15 0.69 HP15_487 DNA repair protein RadA 0.40 HP15_3084 DNA repair protein RecN 0.87 4
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_4275 DNA replication and repair protein RadA 0.38 Psyr_4197 DNA replication and repair protein RecN 0.45 7
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_4275 DNA replication and repair protein RadA 0.38 Psyr_4197 DNA replication and repair protein RecN low > 86
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_1442 DNA repair protein RadA 0.40 PfGW456L13_5106 DNA repair protein RecN 0.40 6
Pseudomonas sp. RS175 0.64 PFR28_03792 DNA repair protein RadA 0.39 PFR28_00071 DNA repair protein RecN low > 88
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_2768 DNA repair protein RadA 0.39 Pf1N1B4_1178 DNA repair protein RecN 0.35 8
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_15680 DNA repair protein RadA 0.38 AO356_07510 DNA repair protein RecN 0.86 1
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS26230 DNA repair protein RadA 0.38 PFLU_RS25910 DNA repair protein RecN 0.21 44
Pseudomonas fluorescens SBW25 0.64 PFLU_RS26230 DNA repair protein RadA 0.38 PFLU_RS25910 DNA repair protein RecN low > 109
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_5076 DNA repair protein RadA 0.39 Pf6N2E2_3370 DNA repair protein RecN 0.54 1
Pseudomonas simiae WCS417 0.63 PS417_24305 DNA repair protein RadA 0.39 PS417_24070 recombination and repair protein 0.54 2
Pseudomonas fluorescens FW300-N2E3 0.63 AO353_13980 DNA repair protein RadA 0.38 AO353_05660 DNA repair protein RecN 0.72 1
Pseudomonas sp. S08-1 0.63 OH686_16185 DNA repair protein RadA 0.39 OH686_17050 DNA repair protein RecN low > 80
Pseudomonas stutzeri RCH2 0.63 Psest_3401 DNA repair protein RadA 0.38 Psest_0962 DNA repair protein RecN 0.62 1
Pseudomonas putida KT2440 0.62 PP_4644 DNA repair enzyme 0.37 PP_4729 factor used in recombination and DNA repair low > 96
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_0877 DNA replication and repair protein RadA 0.37 B158DRAFT_0601 DNA replication and repair protein RecN 0.86 1
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.3812.1 DNA repair protein RadA 0.30 Xcc-8004.3431.1 DNA repair protein RecN low > 74
Acinetobacter radioresistens SK82 0.58 MPMX26_02235 DNA repair protein RadA 0.29 MPMX26_00239 DNA repair protein RecN low > 36
Rhodanobacter sp. FW510-T8 0.58 OKGIIK_09580 radA DNA repair protein RadA 0.33 OKGIIK_07340 recN DNA repair protein RecN low > 52
Rhodanobacter denitrificans MT42 0.58 LRK55_RS02280 DNA repair protein RadA 0.33 LRK55_RS17815 DNA repair protein RecN low > 63
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS02525 DNA repair protein RadA 0.33 LRK54_RS17960 DNA repair protein RecN 0.38 15
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS08845 DNA repair protein RadA 0.34 ABZR86_RS05665 DNA repair protein RecN 0.93 1
Lysobacter sp. OAE881 0.57 ABIE51_RS07685 DNA repair protein RadA 0.31 ABIE51_RS11655 DNA repair protein RecN low > 62
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS06320 DNA repair protein RadA 0.37 QEN71_RS26535 DNA repair protein RecN low > 153
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS12030 DNA repair protein RadA 0.35 RR42_RS05910 DNA repair protein — —
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS12235 DNA repair protein RadA 0.35 BPHYT_RS03560 DNA repair protein 0.18 38
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS11670 DNA repair protein RadA 0.36 ABZR87_RS01065 DNA repair protein RecN low > 80
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_00590 DNA replication and repair protein RadA 0.35 H281DRAFT_04692 DNA replication and repair protein RecN low > 103
Paraburkholderia graminis OAS925 0.54 ABIE53_002526 DNA repair protein RadA/Sms 0.35 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.30 25
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS10745 DNA repair protein RadA 0.38 HSERO_RS03060 DNA repair protein 0.44 14
Ralstonia solanacearum IBSBF1503 0.53 RALBFv3_RS00210 DNA repair protein RadA 0.36 RALBFv3_RS05415 DNA repair protein RecN low > 76
Ralstonia solanacearum UW163 0.53 UW163_RS13540 DNA repair protein RadA 0.36 UW163_RS08210 DNA repair protein RecN — —
Ralstonia solanacearum GMI1000 0.53 RS_RS06880 DNA repair protein RadA 0.35 RS_RS13275 DNA repair protein RecN low > 80
Ralstonia solanacearum PSI07 0.53 RPSI07_RS17270 DNA repair protein RadA 0.36 RPSI07_RS11890 DNA repair protein RecN low > 81
Variovorax sp. SCN45 0.52 GFF5087 DNA repair protein RadA 0.32 GFF2357 DNA repair protein RecN low > 127
Dechlorosoma suillum PS 0.52 Dsui_2413 DNA repair protein RadA 0.33 Dsui_3072 DNA repair protein RecN low > 51
Castellaniella sp019104865 MT123 0.52 ABCV34_RS02345 DNA repair protein RadA 0.33 ABCV34_RS07470 DNA repair protein RecN low > 48
Acidovorax sp. GW101-3H11 0.51 Ac3H11_3371 DNA repair protein RadA 0.32 Ac3H11_3460 DNA repair protein RecN low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF1833 DNA repair protein RadA 0.32 GFF829 DNA repair protein RecN 0.51 79
Azospirillum brasilense Sp245 0.42 AZOBR_RS08320 DNA repair protein RadA 0.24 AZOBR_RS12395 DNA repair protein RecN — —
Magnetospirillum magneticum AMB-1 0.42 AMB_RS10555 DNA repair protein RadA 0.27 AMB_RS19520 DNA repair protein RecN — —
Azospirillum sp. SherDot2 0.42 MPMX19_00904 DNA repair protein RadA 0.24 MPMX19_01601 DNA repair protein RecN 0.56 9
Echinicola vietnamensis KMM 6221, DSM 17526 0.41 Echvi_1031 DNA repair protein RadA 0.23 Echvi_2067 DNA repair protein RecN 0.93 2
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS08395 DNA repair protein RadA 0.25 HMPREF1078_RS02000 DNA repair protein RecN low > 61
Rhodopseudomonas palustris CGA009 0.41 TX73_015980 DNA repair protein RadA 0.24 TX73_018240 DNA repair protein RecN 0.45 33
Bosea sp. OAE506 0.41 ABIE41_RS17800 DNA repair protein RadA 0.24 ABIE41_RS12645 DNA repair protein RecN 0.66 2
Caulobacter crescentus NA1000 0.41 CCNA_01732 DNA repair protein RadA 0.21 CCNA_02062 DNA repair protein recN 0.92 1
Phaeobacter inhibens DSM 17395 0.41 PGA1_c10840 DNA repair protein RadA 0.24 PGA1_c09720 DNA repair protein RecN 0.57 2
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_01732 DNA repair protein RadA 0.21 CCNA_02062 DNA repair protein recN low > 67
Agrobacterium fabrum C58 0.41 Atu1077 DNA repair protein 0.26 Atu2083 DNA repair protein RecN 0.66 2
Dinoroseobacter shibae DFL-12 0.40 Dshi_2129 DNA repair protein RadA (RefSeq) 0.24 Dshi_2413 DNA repair protein RecN (RefSeq) 0.50 17
Phocaeicola vulgatus CL09T03C04 0.40 HMPREF1058_RS14715 DNA repair protein RadA 0.23 HMPREF1058_RS18225 DNA repair protein RecN 0.60 7
Phocaeicola dorei CL03T12C01 0.40 ABI39_RS10420 DNA repair protein RadA 0.23 ABI39_RS14500 DNA repair protein RecN low > 72
Sinorhizobium meliloti 1021 0.40 SMc00556 DNA repair protein RadA 0.27 SMc01877 DNA repair protein 0.67 3
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS00075 DNA repair protein RadA 0.24 HMPREF1181_RS10900 DNA repair protein RecN low > 56
Bacteroides thetaiotaomicron VPI-5482 0.40 BT2406 putative DNA repair protein (NCBI ptt file) 0.25 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.57 4
Bacteroides ovatus ATCC 8483 0.40 BACOVA_03019 DNA repair protein RadA 0.24 BACOVA_00200 DNA repair protein RecN low > 94
Synechococcus elongatus PCC 7942 0.40 Synpcc7942_1452 radA DNA repair protein RadA 0.23 Synpcc7942_1779 recN DNA repair protein RecN low > 38
Brevundimonas sp. GW460-12-10-14-LB2 0.39 A4249_RS03745 DNA repair protein RadA 0.22 A4249_RS02620 DNA repair protein RecN low > 48
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS20495 DNA repair protein RadA 0.26 ABZR88_RS06580 DNA repair protein RecN low > 71
Rhodospirillum rubrum S1H 0.39 Rru_A0406 DNA repair protein RadA (NCBI) 0.24 Rru_A0940 DNA repair protein RecN (NCBI) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_17125 DNA repair protein RadA 0.21 CA264_13235 DNA repair protein RecN 0.77 1
Pedobacter sp. GW460-11-11-14-LB5 0.39 CA265_RS22660 DNA repair protein RadA 0.23 CA265_RS14855 DNA repair protein RecN 0.39 54
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_0751 DNA repair protein RadA 0.25 Ga0059261_1026 DNA repair protein RecN 0.69 2
Shewanella loihica PV-4 0.37 Shew_2807 DNA repair protein RadA (RefSeq) 0.53 Shew_1196 recombination and repair protein (RefSeq) 0.73 13
Bifidobacterium breve UCC2003 0.35 BBR_RS18740 DNA repair protein RadA 0.15 BBR_RS14030 DNA repair protein RecN 0.44 2
Desulfovibrio vulgaris Hildenborough JW710 0.35 DVU1590 radA DNA repair protein RadA (TIGR) 0.17 DVU2463 recN DNA repair protein RecN (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.35 DvMF_0471 DNA repair protein RadA (RefSeq) 0.09 DvMF_0923 SMC domain protein (RefSeq) 0.46 1
Fusobacterium nucleatum SB010 0.32 HUW76_02270 DNA repair protein RadA 0.22 HUW76_08055 DNA repair protein RecN 0.89 14
Mycobacterium tuberculosis H37Rv 0.32 Rv3585 DNA repair protein RadA (DNA repair protein SMS) 0.21 Rv1696 Probable DNA repair protein RecN (recombination protein N) low > 58

Not shown: 2 genomes with orthologs for b4389 only; 0 genomes with orthologs for b2616 only