Conservation of cofitness between b2616 and b4389 in Escherichia coli BW25113

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2616 recN recombination and repair protein (NCBI) 1.0 b4389 radA predicted repair protein (NCBI) 0.55 4
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01091 DNA repair protein RecN 1.00 OHPLBJKB_03672 DNA repair protein RadA low > 73
Escherichia coli ECRC62 1.00 BNILDI_11620 recN DNA repair protein RecN 1.00 BNILDI_08075 radA DNA repair protein RadA — —
Escherichia coli ECOR27 1.00 NOLOHH_12815 recN DNA repair protein RecN 1.00 NOLOHH_03520 radA DNA repair protein RadA low > 57
Escherichia coli BL21 1.00 ECD_02504 recombination and repair protein 1.00 ECD_04265 DNA repair protein low > 60
Escherichia coli ECRC99 0.99 KEDOAH_07075 recN DNA repair protein RecN 1.00 KEDOAH_16960 radA DNA repair protein RadA — —
Escherichia coli ECRC102 0.99 NIAGMN_18915 recN DNA repair protein RecN 1.00 NIAGMN_09045 radA DNA repair protein RadA — —
Escherichia coli ECRC101 0.99 MCAODC_11670 recN DNA repair protein RecN 1.00 MCAODC_01710 radA DNA repair protein RadA — —
Escherichia coli ECRC101 0.99 OKFHMN_21145 recN DNA repair protein RecN 1.00 OKFHMN_11195 radA DNA repair protein RadA — —
Escherichia fergusonii Becca 0.99 EFB2_01277 DNA repair protein RecN 1.00 EFB2_04057 DNA repair protein RadA low > 86
Escherichia coli ECRC98 0.99 JDDGAC_24810 recN DNA repair protein RecN 1.00 JDDGAC_14790 radA DNA repair protein RadA — —
Escherichia coli ECOR38 0.99 HEPCGN_20265 recN DNA repair protein RecN 0.99 HEPCGN_09195 radA DNA repair protein RadA low > 85
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14775 DNA repair protein RecN 1.00 ECOLIN_RS25190 DNA repair protein RadA low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF4162 DNA repair protein RecN 0.98 GFF1057 DNA repair protein RadA low > 78
Enterobacter asburiae PDN3 0.86 EX28DRAFT_2719 DNA repair protein RecN 0.97 EX28DRAFT_3597 DNA repair protein RadA low > 76
Enterobacter sp. TBS_079 0.85 MPMX20_03486 DNA repair protein RecN 0.97 MPMX20_00694 DNA repair protein RadA low > 85
Klebsiella michiganensis M5al 0.84 BWI76_RS21560 DNA repair protein RecN 0.97 BWI76_RS04165 DNA repair protein RadA low > 92
Serratia liquefaciens MT49 0.77 IAI46_19635 DNA repair protein RecN 0.93 IAI46_02945 DNA repair protein RadA low > 86
Pantoea sp. MT58 0.77 IAI47_04810 DNA repair protein RecN 0.93 IAI47_16345 DNA repair protein RadA low > 76
Rahnella sp. WP5 0.75 EX31_RS21760 DNA repair protein RecN 0.94 EX31_RS04030 DNA repair protein RadA low > 89
Dickeya dadantii 3937 0.73 DDA3937_RS04325 DNA repair protein RecN 0.87 DDA3937_RS02420 DNA repair protein RadA low > 74
Erwinia tracheiphila SCR3 0.73 LU632_RS16985 recN DNA repair protein RecN 0.94 LU632_RS02550 radA DNA repair protein RadA low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS04320 DNA repair protein RecN 0.87 HGI48_RS02380 DNA repair protein RadA low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS04235 DNA repair protein RecN 0.88 DZA65_RS02485 DNA repair protein RadA low > 75
Pectobacterium carotovorum WPP14 0.72 HER17_RS17420 DNA repair protein RecN 0.90 HER17_RS19085 DNA repair protein RadA low > 75
Shewanella oneidensis MR-1 0.55 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.77 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.57 5
Shewanella sp. ANA-3 0.55 Shewana3_1104 recombination and repair protein (RefSeq) 0.77 Shewana3_1049 DNA repair protein RadA (RefSeq) low > 73
Shewanella amazonensis SB2B 0.54 Sama_1026 recombination and repair protein (RefSeq) 0.75 Sama_0981 DNA repair protein RadA (RefSeq) 0.68 6
Shewanella loihica PV-4 0.53 Shew_1196 recombination and repair protein (RefSeq) 0.37 Shew_2807 DNA repair protein RadA (RefSeq) 0.73 1
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_04395 DNA repair protein RecN 0.80 CSW01_11870 DNA repair protein RadA 0.36 54
Alteromonas macleodii MIT1002 0.43 MIT1002_01443 Recombination protein N 0.73 MIT1002_02706 Lon protease 2 low > 70
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_5106 DNA repair protein RecN 0.64 PfGW456L13_1442 DNA repair protein RadA 0.40 8
Marinobacter adhaerens HP15 0.40 HP15_3084 DNA repair protein RecN 0.69 HP15_487 DNA repair protein RadA 0.87 3
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_1178 DNA repair protein RecN 0.64 Pf1N1B4_2768 DNA repair protein RadA 0.35 6
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_3370 DNA repair protein RecN 0.64 Pf6N2E2_5076 DNA repair protein RadA 0.54 12
Pseudomonas sp. S08-1 0.39 OH686_17050 DNA repair protein RecN 0.63 OH686_16185 DNA repair protein RadA low > 80
Pseudomonas simiae WCS417 0.39 PS417_24070 recombination and repair protein 0.63 PS417_24305 DNA repair protein RadA 0.54 3
Pseudomonas sp. RS175 0.39 PFR28_00071 DNA repair protein RecN 0.64 PFR28_03792 DNA repair protein RadA low > 88
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS25910 DNA repair protein RecN 0.64 PFLU_RS26230 DNA repair protein RadA 0.21 87
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_07510 DNA repair protein RecN 0.64 AO356_15680 DNA repair protein RadA 0.86 1
Pseudomonas fluorescens SBW25 0.38 PFLU_RS25910 DNA repair protein RecN 0.64 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_05660 DNA repair protein RecN 0.63 AO353_13980 DNA repair protein RadA 0.72 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4197 DNA replication and repair protein RecN 0.64 Psyr_4275 DNA replication and repair protein RadA 0.45 19
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4197 DNA replication and repair protein RecN 0.64 Psyr_4275 DNA replication and repair protein RadA low > 86
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS03060 DNA repair protein 0.53 HSERO_RS10745 DNA repair protein RadA 0.44 2
Pseudomonas stutzeri RCH2 0.38 Psest_0962 DNA repair protein RecN 0.63 Psest_3401 DNA repair protein RadA 0.62 6
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS26535 DNA repair protein RecN 0.55 QEN71_RS06320 DNA repair protein RadA low > 153
Pseudomonas putida KT2440 0.37 PP_4729 factor used in recombination and DNA repair 0.62 PP_4644 DNA repair enzyme low > 96
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0601 DNA replication and repair protein RecN 0.60 B158DRAFT_0877 DNA replication and repair protein RadA 0.86 2
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01065 DNA repair protein RecN 0.54 ABZR87_RS11670 DNA repair protein RadA low > 80
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11890 DNA repair protein RecN 0.53 RPSI07_RS17270 DNA repair protein RadA low > 81
Ralstonia solanacearum UW163 0.36 UW163_RS08210 DNA repair protein RecN 0.53 UW163_RS13540 DNA repair protein RadA — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05415 DNA repair protein RecN 0.53 RALBFv3_RS00210 DNA repair protein RadA low > 76
Paraburkholderia graminis OAS925 0.35 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.54 ABIE53_002526 DNA repair protein RadA/Sms 0.30 20
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS05910 DNA repair protein 0.55 RR42_RS12030 DNA repair protein RadA — —
Ralstonia solanacearum GMI1000 0.35 RS_RS13275 DNA repair protein RecN 0.53 RS_RS06880 DNA repair protein RadA low > 80
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_04692 DNA replication and repair protein RecN 0.54 H281DRAFT_00590 DNA replication and repair protein RadA low > 103
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS03560 DNA repair protein 0.54 BPHYT_RS12235 DNA repair protein RadA low > 109
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS05665 DNA repair protein RecN 0.58 ABZR86_RS08845 DNA repair protein RadA 0.93 1
Castellaniella sp019104865 MT123 0.33 ABCV34_RS07470 DNA repair protein RecN 0.52 ABCV34_RS02345 DNA repair protein RadA low > 48
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_07340 recN DNA repair protein RecN 0.58 OKGIIK_09580 radA DNA repair protein RadA low > 52
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS17960 DNA repair protein RecN 0.58 LRK54_RS02525 DNA repair protein RadA low > 59
Rhodanobacter denitrificans MT42 0.33 LRK55_RS17815 DNA repair protein RecN 0.58 LRK55_RS02280 DNA repair protein RadA low > 63
Dechlorosoma suillum PS 0.33 Dsui_3072 DNA repair protein RecN 0.52 Dsui_2413 DNA repair protein RadA 0.55 19
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF829 DNA repair protein RecN 0.50 GFF1833 DNA repair protein RadA low > 90
Acidovorax sp. GW101-3H11 0.32 Ac3H11_3460 DNA repair protein RecN 0.51 Ac3H11_3371 DNA repair protein RadA low > 79
Variovorax sp. SCN45 0.32 GFF2357 DNA repair protein RecN 0.52 GFF5087 DNA repair protein RadA low > 127
Lysobacter sp. OAE881 0.31 ABIE51_RS11655 DNA repair protein RecN 0.57 ABIE51_RS07685 DNA repair protein RadA low > 62
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.3431.1 DNA repair protein RecN 0.59 Xcc-8004.3812.1 DNA repair protein RadA low > 74
Acinetobacter radioresistens SK82 0.29 MPMX26_00239 DNA repair protein RecN 0.58 MPMX26_02235 DNA repair protein RadA low > 36
Magnetospirillum magneticum AMB-1 0.27 AMB_RS19520 DNA repair protein RecN 0.42 AMB_RS10555 DNA repair protein RadA — —
Sinorhizobium meliloti 1021 0.27 SMc01877 DNA repair protein 0.40 SMc00556 DNA repair protein RadA 0.67 3
Agrobacterium fabrum C58 0.26 Atu2083 DNA repair protein RecN 0.41 Atu1077 DNA repair protein 0.66 2
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS06580 DNA repair protein RecN 0.39 ABZR88_RS20495 DNA repair protein RadA low > 71
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_1026 DNA repair protein RecN 0.39 Ga0059261_0751 DNA repair protein RadA 0.69 1
Bacteroides thetaiotaomicron VPI-5482 0.25 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.40 BT2406 putative DNA repair protein (NCBI ptt file) 0.57 1
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS02000 DNA repair protein RecN 0.41 HMPREF1078_RS08395 DNA repair protein RadA low > 61
Azospirillum brasilense Sp245 0.24 AZOBR_RS12395 DNA repair protein RecN 0.42 AZOBR_RS08320 DNA repair protein RadA — —
Bosea sp. OAE506 0.24 ABIE41_RS12645 DNA repair protein RecN 0.41 ABIE41_RS17800 DNA repair protein RadA 0.66 14
Rhodospirillum rubrum S1H 0.24 Rru_A0940 DNA repair protein RecN (NCBI) 0.39 Rru_A0406 DNA repair protein RadA (NCBI) — —
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS10900 DNA repair protein RecN 0.40 HMPREF1181_RS00075 DNA repair protein RadA low > 56
Phaeobacter inhibens DSM 17395 0.24 PGA1_c09720 DNA repair protein RecN 0.41 PGA1_c10840 DNA repair protein RadA 0.57 2
Bacteroides ovatus ATCC 8483 0.24 BACOVA_00200 DNA repair protein RecN 0.40 BACOVA_03019 DNA repair protein RadA low > 94
Rhodopseudomonas palustris CGA009 0.24 TX73_018240 DNA repair protein RecN 0.41 TX73_015980 DNA repair protein RadA low > 86
Dinoroseobacter shibae DFL-12 0.24 Dshi_2413 DNA repair protein RecN (RefSeq) 0.40 Dshi_2129 DNA repair protein RadA (RefSeq) 0.50 5
Azospirillum sp. SherDot2 0.24 MPMX19_01601 DNA repair protein RecN 0.42 MPMX19_00904 DNA repair protein RadA 0.56 20
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_2067 DNA repair protein RecN 0.41 Echvi_1031 DNA repair protein RadA 0.93 2
Pedobacter sp. GW460-11-11-14-LB5 0.23 CA265_RS14855 DNA repair protein RecN 0.39 CA265_RS22660 DNA repair protein RadA 0.39 26
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS18225 DNA repair protein RecN 0.40 HMPREF1058_RS14715 DNA repair protein RadA 0.60 51
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS14500 DNA repair protein RecN 0.40 ABI39_RS10420 DNA repair protein RadA low > 72
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_1779 recN DNA repair protein RecN 0.40 Synpcc7942_1452 radA DNA repair protein RadA 0.61 24
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS02620 DNA repair protein RecN 0.39 A4249_RS03745 DNA repair protein RadA low > 48
Fusobacterium nucleatum SB010 0.22 HUW76_08055 DNA repair protein RecN 0.32 HUW76_02270 DNA repair protein RadA 0.89 8
Pontibacter actiniarum KMM 6156, DSM 19842 0.21 CA264_13235 DNA repair protein RecN 0.39 CA264_17125 DNA repair protein RadA 0.77 2
Caulobacter crescentus NA1000 0.21 CCNA_02062 DNA repair protein recN 0.41 CCNA_01732 DNA repair protein RadA 0.92 1
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_02062 DNA repair protein recN 0.41 CCNA_01732 DNA repair protein RadA low > 67
Mycobacterium tuberculosis H37Rv 0.21 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.32 Rv3585 DNA repair protein RadA (DNA repair protein SMS) low > 58
Desulfovibrio vulgaris Hildenborough JW710 0.17 DVU2463 recN DNA repair protein RecN (TIGR) 0.35 DVU1590 radA DNA repair protein RadA (TIGR) low > 55
Bifidobacterium breve UCC2003 0.15 BBR_RS14030 DNA repair protein RecN 0.35 BBR_RS18740 DNA repair protein RadA low > 34
Desulfovibrio vulgaris Miyazaki F 0.09 DvMF_0923 SMC domain protein (RefSeq) 0.35 DvMF_0471 DNA repair protein RadA (RefSeq) 0.46 7

Not shown: 0 genomes with orthologs for b2616 only; 2 genomes with orthologs for b4389 only