Conservation of cofitness between b2020 and b2025 in Escherichia coli BW25113

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2020 hisD histidinol dehydrogenase (NCBI) 1.0 b2025 hisF imidazole glycerol phosphate synthase subunit HisF (NCBI) 0.96 8
Escherichia coli ECOR27 0.99 NOLOHH_15830 hisD Histidinol dehydrogenase 0.99 NOLOHH_15805 hisF Imidazole glycerol phosphate synthase subunit HisF low > 57
Escherichia coli BL21 0.99 ECD_01922 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase 0.99 ECD_01927 imidazole glycerol phosphate synthase, catalytic subunit with HisH
Escherichia coli ECRC62 0.99 BNILDI_14740 hisD Histidinol dehydrogenase 1.00 BNILDI_14715 hisF Imidazole glycerol phosphate synthase subunit HisF
Escherichia coli Nissle 1917 0.99 ECOLIN_RS11945 histidinol dehydrogenase 1.00 ECOLIN_RS11970 imidazole glycerol phosphate synthase subunit HisF
Escherichia coli ECOR38 0.99 HEPCGN_03220 hisD Histidinol dehydrogenase 0.99 HEPCGN_03195 hisF Imidazole glycerol phosphate synthase subunit HisF low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.98 OHPLBJKB_01680 Histidinol dehydrogenase 0.99 OHPLBJKB_01675 Imidazole glycerol phosphate synthase subunit HisF low > 73
Escherichia fergusonii Becca 0.98 EFB2_01836 Histidinol dehydrogenase 1.00 EFB2_01831 Imidazole glycerol phosphate synthase subunit HisF low > 86
Escherichia coli ECRC101 0.98 MCAODC_20425 hisD Histidinol dehydrogenase 1.00 MCAODC_20450 hisF Imidazole glycerol phosphate synthase subunit HisF
Escherichia coli ECRC99 0.98 KEDOAH_03635 hisD Histidinol dehydrogenase 1.00 KEDOAH_03660 hisF Imidazole glycerol phosphate synthase subunit HisF
Escherichia coli ECRC98 0.98 JDDGAC_28625 hisD Histidinol dehydrogenase 1.00 JDDGAC_28600 hisF Imidazole glycerol phosphate synthase subunit HisF
Escherichia coli ECRC102 0.98 NIAGMN_22460 hisD Histidinol dehydrogenase 1.00 NIAGMN_22435 hisF Imidazole glycerol phosphate synthase subunit HisF
Escherichia coli ECRC101 0.98 OKFHMN_24515 hisD Histidinol dehydrogenase 1.00 OKFHMN_24490 hisF Imidazole glycerol phosphate synthase subunit HisF
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF3912 Histidinol dehydrogenase (EC 1.1.1.23) 0.95 GFF3907 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) low > 78
Enterobacter asburiae PDN3 0.89 EX28DRAFT_0539 histidinol dehydrogenase 0.96 EX28DRAFT_0534 imidazoleglycerol phosphate synthase, cyclase subunit 0.91 12
Enterobacter sp. TBS_079 0.89 MPMX20_03002 Histidinol dehydrogenase 0.97 MPMX20_03007 Imidazole glycerol phosphate synthase subunit HisF 0.97 5
Klebsiella michiganensis M5al 0.88 BWI76_RS18925 histidinol dehydrogenase 0.96 BWI76_RS18950 imidazole glycerol phosphate synthase cyclase subunit 0.90 6
Serratia liquefaciens MT49 0.85 IAI46_08210 histidinol dehydrogenase 0.95 IAI46_08185 imidazole glycerol phosphate synthase subunit HisF 0.83 9
Pantoea sp. MT58 0.82 IAI47_07090 histidinol dehydrogenase 0.90 IAI47_07065 imidazole glycerol phosphate synthase subunit HisF 0.98 4
Erwinia tracheiphila SCR3 0.81 LU632_RS08945 hisD histidinol dehydrogenase 0.93 LU632_RS08920 hisF imidazole glycerol phosphate synthase subunit HisF 0.93 4
Dickeya dadantii 3937 0.80 DDA3937_RS09735 histidinol dehydrogenase 0.93 DDA3937_RS09710 imidazole glycerol phosphate synthase subunit HisF 0.97 3
Pectobacterium carotovorum WPP14 0.80 HER17_RS12230 histidinol dehydrogenase 0.91 HER17_RS12255 imidazole glycerol phosphate synthase subunit HisF 0.97 8
Dickeya dianthicola 67-19 0.79 HGI48_RS09745 histidinol dehydrogenase 0.92 HGI48_RS09720 imidazole glycerol phosphate synthase subunit HisF
Rahnella sp. WP5 0.79 EX31_RS11440 histidinol dehydrogenase 0.91 EX31_RS11465 imidazole glycerol phosphate synthase subunit HisF 0.95 28
Dickeya dianthicola ME23 0.79 DZA65_RS10055 histidinol dehydrogenase 0.92 DZA65_RS10030 imidazole glycerol phosphate synthase subunit HisF 0.84 14
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_05750 histidinol dehydrogenase 0.87 CSW01_05775 imidazole glycerol phosphate synthase cyclase subunit 0.57 46
Shewanella amazonensis SB2B 0.59 Sama_1942 hisD histidinol dehydrogenase (RefSeq) 0.77 Sama_1947 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.99 3
Shewanella loihica PV-4 0.57 Shew_2198 histidinol dehydrogenase (RefSeq) 0.75 Shew_2203 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.91 31
Shewanella oneidensis MR-1 0.57 SO2073 hisD histidinol dehydrogenase (NCBI ptt file) 0.75 SO2068 hisF hisF protein (cyclase) (NCBI ptt file) 0.98 7
Shewanella sp. ANA-3 0.56 Shewana3_1853 hisD histidinol dehydrogenase (RefSeq) 0.75 Shewana3_1848 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.94 22
Alteromonas macleodii MIT1002 0.54 MIT1002_02633 Histidinol dehydrogenase 0.76 MIT1002_02638 Imidazole glycerol phosphate synthase subunit HisF 0.97 26
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS01605 histidinol dehydrogenase 0.65 LRK54_RS01580 imidazole glycerol phosphate synthase subunit HisF 0.58 48
Rhodanobacter denitrificans MT42 0.53 LRK55_RS01385 histidinol dehydrogenase 0.64 LRK55_RS01360 imidazole glycerol phosphate synthase subunit HisF 0.59 41
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS06730 histidinol dehydrogenase 0.63 ABZR86_RS06705 imidazole glycerol phosphate synthase subunit HisF 0.96 25
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_04950 hisD histidinol dehydrogenase 0.64 OKGIIK_04975 hisF imidazole glycerol phosphate synthase subunit HisF low > 52
Bacteroides ovatus ATCC 8483 0.53 BACOVA_01234 histidinol dehydrogenase 0.44 BACOVA_00219 imidazoleglycerol phosphate synthase, cyclase subunit 0.98 5
Bacteroides thetaiotaomicron VPI-5482 0.52 BT0201 histidinol dehydrogenase (NCBI ptt file) 0.44 BT1378 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) 0.87 31
Phocaeicola vulgatus CL09T03C04 0.51 HMPREF1058_RS15875 histidinol dehydrogenase 0.46 HMPREF1058_RS06175 imidazole glycerol phosphate synthase subunit HisF 0.95 11
Bacteroides stercoris CC31F 0.50 HMPREF1181_RS04860 histidinol dehydrogenase 0.42 HMPREF1181_RS11070 imidazole glycerol phosphate synthase subunit HisF 0.97 4
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS11835 histidinol dehydrogenase 0.46 ABI39_RS19930 imidazole glycerol phosphate synthase subunit HisF 0.77 33
Lysobacter sp. OAE881 0.49 ABIE51_RS13325 histidinol dehydrogenase 0.65 ABIE51_RS13300 imidazole glycerol phosphate synthase subunit HisF 0.90 54
Parabacteroides merdae CL09T00C40 0.48 HMPREF1078_RS02450 histidinol dehydrogenase 0.43 HMPREF1078_RS13565 imidazole glycerol phosphate synthase subunit HisF 0.98 11
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.2948.1 Histidinol dehydrogenase (EC 1.1.1.23) 0.63 Xcc-8004.2943.1 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.88 11
Echinicola vietnamensis KMM 6221, DSM 17526 0.47 Echvi_2459 histidinol dehydrogenase 0.41 Echvi_2516 imidazoleglycerol phosphate synthase, cyclase subunit 0.97 3
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_05030 histidinol dehydrogenase 0.47 CA264_05110 imidazole glycerol phosphate synthase cyclase subunit 0.43 11
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS06880 histidinol dehydrogenase 0.43 ABZR88_RS06855 imidazole glycerol phosphate synthase subunit HisF
Brevundimonas sp. GW460-12-10-14-LB2 0.38 A4249_RS10695 histidinol dehydrogenase 0.57 A4249_RS10715 imidazole glycerol phosphate synthase subunit HisF 0.99 13
Methanococcus maripaludis JJ 0.38 MMJJ_RS00120 histidinol dehydrogenase 0.38 MMJJ_RS05490 imidazole glycerol phosphate synthase subunit HisF
Methanococcus maripaludis S2 0.37 MMP_RS05015 histidinol dehydrogenase 0.38 MMP_RS08865 imidazole glycerol phosphate synthase subunit HisF
Sinorhizobium meliloti 1021 0.35 SMc02307 histidinol dehydrogenase 0.36 SMc02569 imidazole glycerol phosphate synthase subunit HisF 0.94 5
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS18915 histidinol dehydrogenase 0.42 RR42_RS18885 imidazole glycerol phosphate synthase
Rhizobium sp. OAE497 0.34 ABIE40_RS02725 histidinol dehydrogenase 0.36 ABIE40_RS19440 imidazole glycerol phosphate synthase subunit HisF 0.99 3
Pseudomonas sp. S08-1 0.34 OH686_08470 Histidinol dehydrogenase 0.42 OH686_14595 Imidazole glycerol phosphate synthase cyclase subunit 0.73 37
Agrobacterium fabrum C58 0.34 Atu0537 histidinol dehydrogenase 0.37 Atu0039 imidazoleglycerol-phosphate synthase cyclase 0.87 20
Pseudomonas stutzeri RCH2 0.34 Psest_3298 histidinol dehydrogenase 0.42 Psest_0156 imidazoleglycerol phosphate synthase, cyclase subunit
Magnetospirillum magneticum AMB-1 0.34 AMB_RS16905 histidinol dehydrogenase 0.37 AMB_RS22925 imidazole glycerol phosphate synthase cyclase subunit
Dinoroseobacter shibae DFL-12 0.34 Dshi_0979 Histidinol dehydrogenase (RefSeq) 0.37 Dshi_2576 imidazoleglycerol phosphate synthase, cyclase subunit (RefSeq)
Herbaspirillum seropedicae SmR1 0.33 HSERO_RS20345 histidinol dehydrogenase 0.39 HSERO_RS20315 imidazole glycerol phosphate synthase 0.89 9
Phaeobacter inhibens DSM 17395 0.33 PGA1_c31190 histidinol dehydrogenase HisD 0.34 PGA1_c09240 imidazole glycerol phosphate synthase subunit HisF
Pseudomonas fluorescens SBW25 0.33 PFLU_RS04470 histidinol dehydrogenase 0.40 PFLU_RS01625 imidazole glycerol phosphate synthase subunit HisF low > 109
Pseudomonas simiae WCS417 0.33 PS417_04420 histidinol dehydrogenase 0.40 PS417_01580 imidazole glycerol phosphate synthase 0.83 26
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_1066 Histidinol dehydrogenase (EC 1.1.1.23) 0.40 Pf1N1B4_1623 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS04470 histidinol dehydrogenase 0.40 PFLU_RS01625 imidazole glycerol phosphate synthase subunit HisF 0.69 21
Variovorax sp. OAS795 0.33 ABID97_RS23160 histidinol dehydrogenase 0.41 ABID97_RS23105 imidazole glycerol phosphate synthase subunit HisF
Variovorax sp. SCN45 0.33 GFF5345 Histidinol dehydrogenase (EC 1.1.1.23) 0.39 GFF5357 Imidazole glycerol phosphate synthase cyclase subunit
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_06965 histidinol dehydrogenase 0.40 AO356_09795 imidazole glycerol phosphate synthase subunit HisF 0.79 38
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_3252 Histidinol dehydrogenase (EC 1.1.1.23) 0.40 Pf6N2E2_3838 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_4133 histidinol dehydrogenase 0.40 Psyr_4893 imidazole glycerol phosphate synthase subunit hisF
Dechlorosoma suillum PS 0.33 Dsui_1411 histidinol dehydrogenase 0.38 Dsui_1418 imidazoleglycerol phosphate synthase, cyclase subunit
Marinobacter adhaerens HP15 0.33 HP15_2428 histidinol dehydrogenase 0.39 HP15_3009 protein containing histidine biosynthesis, HisF domain
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_4133 histidinol dehydrogenase 0.40 Psyr_4893 imidazole glycerol phosphate synthase subunit hisF 0.83 22
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_5000 Histidinol dehydrogenase (EC 1.1.1.23) 0.40 PfGW456L13_358 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.96 7
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_05110 histidinol dehydrogenase 0.40 AO353_12090 imidazole glycerol phosphate synthase subunit HisF 0.86 22
Pseudomonas sp. RS175 0.33 PFR28_00187 Histidinol dehydrogenase 0.40 PFR28_04933 Imidazole glycerol phosphate synthase subunit HisF 0.66 21
Synechococcus elongatus PCC 7942 0.33 Synpcc7942_1519 hisD histidinol dehydrogenase 0.37 Synpcc7942_2087 hisF imidazole glycerol phosphate synthase subunit HisF
Rhodopseudomonas palustris CGA009 0.32 TX73_023540 histidinol dehydrogenase 0.33 TX73_001625 imidazole glycerol phosphate synthase subunit HisF
Pseudomonas putida KT2440 0.32 PP_0966 Histidinol dehydrogenase 0.41 PP_0293 Imidazole glycerol phosphate synthase subunit HisF 0.85 27
Ralstonia solanacearum PSI07 0.32 RPSI07_RS10390 histidinol dehydrogenase 0.42 RPSI07_RS10420 imidazole glycerol phosphate synthase subunit HisF
Acinetobacter radioresistens SK82 0.32 MPMX26_02587 Histidinol dehydrogenase 0.40 MPMX26_02854 Imidazole glycerol phosphate synthase subunit HisF 0.98 9
Ralstonia sp. UNC404CL21Col 0.32 ABZR87_RS02500 histidinol dehydrogenase 0.42 ABZR87_RS02470 imidazole glycerol phosphate synthase subunit HisF
Acidovorax sp. GW101-3H11 0.32 Ac3H11_4724 Histidinol dehydrogenase (EC 1.1.1.23) 0.34 Ac3H11_4733 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
Ralstonia solanacearum IBSBF1503 0.32 RALBFv3_RS06845 histidinol dehydrogenase 0.43 RALBFv3_RS06815 imidazole glycerol phosphate synthase subunit HisF
Desulfovibrio vulgaris Hildenborough JW710 0.32 DVU0796 hisD histidinol dehydrogenase (TIGR) 0.37 DVU0286 hisF imidazoleglycerol phosphate synthase, cyclase subunit (TIGR) 0.93 3
Ralstonia solanacearum UW163 0.32 UW163_RS06770 histidinol dehydrogenase 0.43 UW163_RS06800 imidazole glycerol phosphate synthase subunit HisF
Ralstonia solanacearum GMI1000 0.32 RS_RS14790 histidinol dehydrogenase 0.42 RS_RS14760 imidazole glycerol phosphate synthase subunit HisF
Azospirillum sp. SherDot2 0.32 MPMX19_05543 Histidinol dehydrogenase 0.40 MPMX19_02542 Imidazole glycerol phosphate synthase subunit HisF
Bosea sp. OAE506 0.32 ABIE41_RS24015 histidinol dehydrogenase 0.34 ABIE41_RS03810 imidazole glycerol phosphate synthase subunit HisF
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_1281 histidinol dehydrogenase 0.35 Ga0059261_1048 imidazoleglycerol phosphate synthase, cyclase subunit 0.99 2
Rhodospirillum rubrum S1H 0.31 Rru_A2771 Histidinol dehydrogenase (NCBI) 0.36 Rru_A3594 Histidine biosynthesis protein HisF (NCBI) low > 58
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS17710 histidinol dehydrogenase 0.41 BPHYT_RS17680 imidazole glycerol phosphate synthase subunit HisF
Paraburkholderia graminis OAS925 0.31 ABIE53_003701 histidinol dehydrogenase 0.41 ABIE53_003695 cyclase
Paraburkholderia sabiae LMG 24235 0.31 QEN71_RS27865 histidinol dehydrogenase 0.40 QEN71_RS27835 imidazole glycerol phosphate synthase subunit HisF 0.96 2
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF1314 Histidinol dehydrogenase (EC 1.1.1.23) 0.38 GFF1309 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
Castellaniella sp019104865 MT123 0.31 ABCV34_RS11230 histidinol dehydrogenase 0.37 ABCV34_RS11250 imidazole glycerol phosphate synthase subunit HisF 0.85 47
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_05652 histidinol dehydrogenase 0.41 H281DRAFT_05659 imidazole glycerol phosphate synthase subunit hisF
Desulfovibrio vulgaris Miyazaki F 0.30 DvMF_2814 hisD histidinol dehydrogenase (RefSeq) 0.36 DvMF_2304 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.95 9
Bifidobacterium breve UCC2003 0.28 BBR_RS17055 histidinol dehydrogenase 0.40 BBR_RS16095 imidazole glycerol phosphate synthase subunit HisF 0.80 3
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_02431 histidinol dehydrogenase 0.41 CCNA_03853 imidazole glycerol phosphate synthase, cyclase subunit low > 67
Caulobacter crescentus NA1000 0.27 CCNA_02431 histidinol dehydrogenase 0.41 CCNA_03853 imidazole glycerol phosphate synthase, cyclase subunit 0.99 1
Mycobacterium tuberculosis H37Rv 0.27 Rv1599 Probable histidinol dehydrogenase HisD (HDH) 0.37 Rv1605 Probable cyclase HisF
Kangiella aquimarina DSM 16071 0.25 B158DRAFT_2293 histidinol dehydrogenase 0.39 B158DRAFT_2291 imidazoleglycerol phosphate synthase, cyclase subunit low > 40

Not shown: 1 genomes with orthologs for b2020 only; 1 genomes with orthologs for b2025 only