Conservation of cofitness between b2025 and b2020 in Escherichia coli BW25113

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2025 hisF imidazole glycerol phosphate synthase subunit HisF (NCBI) 1.0 b2020 hisD histidinol dehydrogenase (NCBI) 0.96 5
Escherichia fergusonii Becca 1.00 EFB2_01831 Imidazole glycerol phosphate synthase subunit HisF 0.98 EFB2_01836 Histidinol dehydrogenase low > 86
Escherichia coli ECRC99 1.00 KEDOAH_03660 hisF Imidazole glycerol phosphate synthase subunit HisF 0.98 KEDOAH_03635 hisD Histidinol dehydrogenase
Escherichia coli ECRC101 1.00 MCAODC_20450 hisF Imidazole glycerol phosphate synthase subunit HisF 0.98 MCAODC_20425 hisD Histidinol dehydrogenase
Escherichia coli ECRC98 1.00 JDDGAC_28600 hisF Imidazole glycerol phosphate synthase subunit HisF 0.98 JDDGAC_28625 hisD Histidinol dehydrogenase
Escherichia coli ECRC101 1.00 OKFHMN_24490 hisF Imidazole glycerol phosphate synthase subunit HisF 0.98 OKFHMN_24515 hisD Histidinol dehydrogenase
Escherichia coli ECRC102 1.00 NIAGMN_22435 hisF Imidazole glycerol phosphate synthase subunit HisF 0.98 NIAGMN_22460 hisD Histidinol dehydrogenase
Escherichia coli ECRC62 1.00 BNILDI_14715 hisF Imidazole glycerol phosphate synthase subunit HisF 0.99 BNILDI_14740 hisD Histidinol dehydrogenase
Escherichia coli Nissle 1917 1.00 ECOLIN_RS11970 imidazole glycerol phosphate synthase subunit HisF 0.99 ECOLIN_RS11945 histidinol dehydrogenase
Escherichia coli ECOR27 0.99 NOLOHH_15805 hisF Imidazole glycerol phosphate synthase subunit HisF 0.99 NOLOHH_15830 hisD Histidinol dehydrogenase low > 57
Escherichia coli ECOR38 0.99 HEPCGN_03195 hisF Imidazole glycerol phosphate synthase subunit HisF 0.99 HEPCGN_03220 hisD Histidinol dehydrogenase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_01675 Imidazole glycerol phosphate synthase subunit HisF 0.98 OHPLBJKB_01680 Histidinol dehydrogenase low > 73
Escherichia coli BL21 0.99 ECD_01927 imidazole glycerol phosphate synthase, catalytic subunit with HisH 0.99 ECD_01922 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase
Enterobacter sp. TBS_079 0.97 MPMX20_03007 Imidazole glycerol phosphate synthase subunit HisF 0.89 MPMX20_03002 Histidinol dehydrogenase 0.97 4
Enterobacter asburiae PDN3 0.96 EX28DRAFT_0534 imidazoleglycerol phosphate synthase, cyclase subunit 0.89 EX28DRAFT_0539 histidinol dehydrogenase 0.91 5
Klebsiella michiganensis M5al 0.96 BWI76_RS18950 imidazole glycerol phosphate synthase cyclase subunit 0.88 BWI76_RS18925 histidinol dehydrogenase 0.90 2
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF3907 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.93 GFF3912 Histidinol dehydrogenase (EC 1.1.1.23) low > 78
Serratia liquefaciens MT49 0.95 IAI46_08185 imidazole glycerol phosphate synthase subunit HisF 0.85 IAI46_08210 histidinol dehydrogenase 0.83 7
Erwinia tracheiphila SCR3 0.93 LU632_RS08920 hisF imidazole glycerol phosphate synthase subunit HisF 0.81 LU632_RS08945 hisD histidinol dehydrogenase 0.93 5
Dickeya dadantii 3937 0.93 DDA3937_RS09710 imidazole glycerol phosphate synthase subunit HisF 0.80 DDA3937_RS09735 histidinol dehydrogenase 0.97 2
Dickeya dianthicola ME23 0.92 DZA65_RS10030 imidazole glycerol phosphate synthase subunit HisF 0.79 DZA65_RS10055 histidinol dehydrogenase 0.84 13
Dickeya dianthicola 67-19 0.92 HGI48_RS09720 imidazole glycerol phosphate synthase subunit HisF 0.79 HGI48_RS09745 histidinol dehydrogenase
Pectobacterium carotovorum WPP14 0.91 HER17_RS12255 imidazole glycerol phosphate synthase subunit HisF 0.80 HER17_RS12230 histidinol dehydrogenase 0.97 12
Rahnella sp. WP5 0.91 EX31_RS11465 imidazole glycerol phosphate synthase subunit HisF 0.79 EX31_RS11440 histidinol dehydrogenase 0.95 32
Pantoea sp. MT58 0.90 IAI47_07065 imidazole glycerol phosphate synthase subunit HisF 0.82 IAI47_07090 histidinol dehydrogenase 0.98 8
Vibrio cholerae E7946 ATCC 55056 0.87 CSW01_05775 imidazole glycerol phosphate synthase cyclase subunit 0.63 CSW01_05750 histidinol dehydrogenase low > 62
Shewanella amazonensis SB2B 0.77 Sama_1947 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.59 Sama_1942 hisD histidinol dehydrogenase (RefSeq) 0.99 2
Alteromonas macleodii MIT1002 0.76 MIT1002_02638 Imidazole glycerol phosphate synthase subunit HisF 0.54 MIT1002_02633 Histidinol dehydrogenase 0.97 10
Shewanella oneidensis MR-1 0.75 SO2068 hisF hisF protein (cyclase) (NCBI ptt file) 0.57 SO2073 hisD histidinol dehydrogenase (NCBI ptt file) 0.98 2
Shewanella sp. ANA-3 0.75 Shewana3_1848 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.56 Shewana3_1853 hisD histidinol dehydrogenase (RefSeq) 0.94 14
Shewanella loihica PV-4 0.75 Shew_2203 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.57 Shew_2198 histidinol dehydrogenase (RefSeq) 0.91 40
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS01580 imidazole glycerol phosphate synthase subunit HisF 0.53 LRK54_RS01605 histidinol dehydrogenase 0.58 8
Lysobacter sp. OAE881 0.65 ABIE51_RS13300 imidazole glycerol phosphate synthase subunit HisF 0.49 ABIE51_RS13325 histidinol dehydrogenase 0.90 5
Rhodanobacter denitrificans MT42 0.64 LRK55_RS01360 imidazole glycerol phosphate synthase subunit HisF 0.53 LRK55_RS01385 histidinol dehydrogenase 0.59 40
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_04975 hisF imidazole glycerol phosphate synthase subunit HisF 0.53 OKGIIK_04950 hisD histidinol dehydrogenase low > 52
Dyella japonica UNC79MFTsu3.2 0.63 ABZR86_RS06705 imidazole glycerol phosphate synthase subunit HisF 0.53 ABZR86_RS06730 histidinol dehydrogenase 0.96 3
Xanthomonas campestris pv. campestris strain 8004 0.63 Xcc-8004.2943.1 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.48 Xcc-8004.2948.1 Histidinol dehydrogenase (EC 1.1.1.23) 0.88 13
Brevundimonas sp. GW460-12-10-14-LB2 0.57 A4249_RS10715 imidazole glycerol phosphate synthase subunit HisF 0.38 A4249_RS10695 histidinol dehydrogenase 0.99 16
Pontibacter actiniarum KMM 6156, DSM 19842 0.47 CA264_05110 imidazole glycerol phosphate synthase cyclase subunit 0.45 CA264_05030 histidinol dehydrogenase 0.43 1
Phocaeicola vulgatus CL09T03C04 0.46 HMPREF1058_RS06175 imidazole glycerol phosphate synthase subunit HisF 0.51 HMPREF1058_RS15875 histidinol dehydrogenase 0.95 3
Phocaeicola dorei CL03T12C01 0.46 ABI39_RS19930 imidazole glycerol phosphate synthase subunit HisF 0.50 ABI39_RS11835 histidinol dehydrogenase 0.77 33
Bacteroides thetaiotaomicron VPI-5482 0.44 BT1378 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) 0.52 BT0201 histidinol dehydrogenase (NCBI ptt file) 0.87 8
Bacteroides ovatus ATCC 8483 0.44 BACOVA_00219 imidazoleglycerol phosphate synthase, cyclase subunit 0.53 BACOVA_01234 histidinol dehydrogenase 0.98 4
Parabacteroides merdae CL09T00C40 0.43 HMPREF1078_RS13565 imidazole glycerol phosphate synthase subunit HisF 0.48 HMPREF1078_RS02450 histidinol dehydrogenase 0.98 2
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS06855 imidazole glycerol phosphate synthase subunit HisF 0.44 ABZR88_RS06880 histidinol dehydrogenase
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS06815 imidazole glycerol phosphate synthase subunit HisF 0.32 RALBFv3_RS06845 histidinol dehydrogenase
Ralstonia solanacearum UW163 0.43 UW163_RS06800 imidazole glycerol phosphate synthase subunit HisF 0.32 UW163_RS06770 histidinol dehydrogenase
Ralstonia solanacearum PSI07 0.42 RPSI07_RS10420 imidazole glycerol phosphate synthase subunit HisF 0.32 RPSI07_RS10390 histidinol dehydrogenase
Pseudomonas sp. S08-1 0.42 OH686_14595 Imidazole glycerol phosphate synthase cyclase subunit 0.34 OH686_08470 Histidinol dehydrogenase 0.73 16
Ralstonia solanacearum GMI1000 0.42 RS_RS14760 imidazole glycerol phosphate synthase subunit HisF 0.32 RS_RS14790 histidinol dehydrogenase
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS02470 imidazole glycerol phosphate synthase subunit HisF 0.32 ABZR87_RS02500 histidinol dehydrogenase
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS11070 imidazole glycerol phosphate synthase subunit HisF 0.50 HMPREF1181_RS04860 histidinol dehydrogenase 0.97 2
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS18885 imidazole glycerol phosphate synthase 0.35 RR42_RS18915 histidinol dehydrogenase
Pseudomonas stutzeri RCH2 0.42 Psest_0156 imidazoleglycerol phosphate synthase, cyclase subunit 0.34 Psest_3298 histidinol dehydrogenase
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS17680 imidazole glycerol phosphate synthase subunit HisF 0.31 BPHYT_RS17710 histidinol dehydrogenase
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_03853 imidazole glycerol phosphate synthase, cyclase subunit 0.27 CCNA_02431 histidinol dehydrogenase low > 67
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_05659 imidazole glycerol phosphate synthase subunit hisF 0.31 H281DRAFT_05652 histidinol dehydrogenase
Echinicola vietnamensis KMM 6221, DSM 17526 0.41 Echvi_2516 imidazoleglycerol phosphate synthase, cyclase subunit 0.47 Echvi_2459 histidinol dehydrogenase 0.97 2
Caulobacter crescentus NA1000 0.41 CCNA_03853 imidazole glycerol phosphate synthase, cyclase subunit 0.27 CCNA_02431 histidinol dehydrogenase 0.99 1
Pseudomonas putida KT2440 0.41 PP_0293 Imidazole glycerol phosphate synthase subunit HisF 0.32 PP_0966 Histidinol dehydrogenase 0.85 3
Paraburkholderia graminis OAS925 0.41 ABIE53_003695 cyclase 0.31 ABIE53_003701 histidinol dehydrogenase
Variovorax sp. OAS795 0.41 ABID97_RS23105 imidazole glycerol phosphate synthase subunit HisF 0.33 ABID97_RS23160 histidinol dehydrogenase
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS27835 imidazole glycerol phosphate synthase subunit HisF 0.31 QEN71_RS27865 histidinol dehydrogenase 0.96 8
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_4893 imidazole glycerol phosphate synthase subunit hisF 0.33 Psyr_4133 histidinol dehydrogenase
Bifidobacterium breve UCC2003 0.40 BBR_RS16095 imidazole glycerol phosphate synthase subunit HisF 0.28 BBR_RS17055 histidinol dehydrogenase 0.80 1
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_4893 imidazole glycerol phosphate synthase subunit hisF 0.33 Psyr_4133 histidinol dehydrogenase 0.83 6
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_09795 imidazole glycerol phosphate synthase subunit HisF 0.33 AO356_06965 histidinol dehydrogenase 0.79 4
Azospirillum sp. SherDot2 0.40 MPMX19_02542 Imidazole glycerol phosphate synthase subunit HisF 0.32 MPMX19_05543 Histidinol dehydrogenase
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_12090 imidazole glycerol phosphate synthase subunit HisF 0.33 AO353_05110 histidinol dehydrogenase 0.86 4
Acinetobacter radioresistens SK82 0.40 MPMX26_02854 Imidazole glycerol phosphate synthase subunit HisF 0.32 MPMX26_02587 Histidinol dehydrogenase 0.98 5
Pseudomonas sp. RS175 0.40 PFR28_04933 Imidazole glycerol phosphate synthase subunit HisF 0.33 PFR28_00187 Histidinol dehydrogenase 0.66 2
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_1623 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.33 Pf1N1B4_1066 Histidinol dehydrogenase (EC 1.1.1.23)
Pseudomonas fluorescens SBW25 0.40 PFLU_RS01625 imidazole glycerol phosphate synthase subunit HisF 0.33 PFLU_RS04470 histidinol dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS01625 imidazole glycerol phosphate synthase subunit HisF 0.33 PFLU_RS04470 histidinol dehydrogenase 0.69 4
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_3838 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.33 Pf6N2E2_3252 Histidinol dehydrogenase (EC 1.1.1.23)
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_358 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.33 PfGW456L13_5000 Histidinol dehydrogenase (EC 1.1.1.23) 0.96 2
Pseudomonas simiae WCS417 0.40 PS417_01580 imidazole glycerol phosphate synthase 0.33 PS417_04420 histidinol dehydrogenase 0.83 1
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS20315 imidazole glycerol phosphate synthase 0.33 HSERO_RS20345 histidinol dehydrogenase 0.89 5
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_2291 imidazoleglycerol phosphate synthase, cyclase subunit 0.25 B158DRAFT_2293 histidinol dehydrogenase low > 40
Variovorax sp. SCN45 0.39 GFF5357 Imidazole glycerol phosphate synthase cyclase subunit 0.33 GFF5345 Histidinol dehydrogenase (EC 1.1.1.23)
Marinobacter adhaerens HP15 0.39 HP15_3009 protein containing histidine biosynthesis, HisF domain 0.33 HP15_2428 histidinol dehydrogenase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF1309 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.31 GFF1314 Histidinol dehydrogenase (EC 1.1.1.23)
Dechlorosoma suillum PS 0.38 Dsui_1418 imidazoleglycerol phosphate synthase, cyclase subunit 0.33 Dsui_1411 histidinol dehydrogenase
Methanococcus maripaludis JJ 0.38 MMJJ_RS05490 imidazole glycerol phosphate synthase subunit HisF 0.38 MMJJ_RS00120 histidinol dehydrogenase
Methanococcus maripaludis S2 0.38 MMP_RS08865 imidazole glycerol phosphate synthase subunit HisF 0.37 MMP_RS05015 histidinol dehydrogenase
Castellaniella sp019104865 MT123 0.37 ABCV34_RS11250 imidazole glycerol phosphate synthase subunit HisF 0.31 ABCV34_RS11230 histidinol dehydrogenase 0.85 2
Magnetospirillum magneticum AMB-1 0.37 AMB_RS22925 imidazole glycerol phosphate synthase cyclase subunit 0.34 AMB_RS16905 histidinol dehydrogenase
Mycobacterium tuberculosis H37Rv 0.37 Rv1605 Probable cyclase HisF 0.27 Rv1599 Probable histidinol dehydrogenase HisD (HDH)
Desulfovibrio vulgaris Hildenborough JW710 0.37 DVU0286 hisF imidazoleglycerol phosphate synthase, cyclase subunit (TIGR) 0.32 DVU0796 hisD histidinol dehydrogenase (TIGR) 0.93 3
Dinoroseobacter shibae DFL-12 0.37 Dshi_2576 imidazoleglycerol phosphate synthase, cyclase subunit (RefSeq) 0.34 Dshi_0979 Histidinol dehydrogenase (RefSeq)
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_2087 hisF imidazole glycerol phosphate synthase subunit HisF 0.33 Synpcc7942_1519 hisD histidinol dehydrogenase
Agrobacterium fabrum C58 0.37 Atu0039 imidazoleglycerol-phosphate synthase cyclase 0.34 Atu0537 histidinol dehydrogenase 0.87 3
Desulfovibrio vulgaris Miyazaki F 0.36 DvMF_2304 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.30 DvMF_2814 hisD histidinol dehydrogenase (RefSeq) 0.95 8
Sinorhizobium meliloti 1021 0.36 SMc02569 imidazole glycerol phosphate synthase subunit HisF 0.35 SMc02307 histidinol dehydrogenase 0.94 5
Rhodospirillum rubrum S1H 0.36 Rru_A3594 Histidine biosynthesis protein HisF (NCBI) 0.31 Rru_A2771 Histidinol dehydrogenase (NCBI) 0.60 48
Rhizobium sp. OAE497 0.36 ABIE40_RS19440 imidazole glycerol phosphate synthase subunit HisF 0.34 ABIE40_RS02725 histidinol dehydrogenase 0.99 5
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_1048 imidazoleglycerol phosphate synthase, cyclase subunit 0.31 Ga0059261_1281 histidinol dehydrogenase 0.99 5
Acidovorax sp. GW101-3H11 0.34 Ac3H11_4733 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.32 Ac3H11_4724 Histidinol dehydrogenase (EC 1.1.1.23)
Bosea sp. OAE506 0.34 ABIE41_RS03810 imidazole glycerol phosphate synthase subunit HisF 0.32 ABIE41_RS24015 histidinol dehydrogenase
Phaeobacter inhibens DSM 17395 0.34 PGA1_c09240 imidazole glycerol phosphate synthase subunit HisF 0.33 PGA1_c31190 histidinol dehydrogenase HisD
Rhodopseudomonas palustris CGA009 0.33 TX73_001625 imidazole glycerol phosphate synthase subunit HisF 0.32 TX73_023540 histidinol dehydrogenase

Not shown: 1 genomes with orthologs for b2025 only; 1 genomes with orthologs for b2020 only