| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b2838 | lysA | diaminopimelate decarboxylase, PLP-binding (NCBI) | 1.0 | b1261 | trpB | tryptophan synthase subunit beta (NCBI) | 0.91 | 20 |
| Escherichia coli BL21 | 1.00 | ECD_02686 | | diaminopimelate decarboxylase, PLP-binding | 1.00 | ECD_01235 | | tryptophan synthase, beta subunit | low | > 60 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00891 | | Diaminopimelate decarboxylase | 1.00 | OHPLBJKB_02422 | | Tryptophan synthase beta chain | low | > 73 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_19565 | lysA | diaminopimelate decarboxylase | 1.00 | HEPCGN_25520 | trpB | tryptophan synthase subunit beta | low | > 85 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_11830 | lysA | diaminopimelate decarboxylase | 1.00 | NOLOHH_20330 | trpB | tryptophan synthase subunit beta | low | > 57 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_08185 | lysA | diaminopimelate decarboxylase | 1.00 | KEDOAH_26080 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia fergusonii Becca | 1.00 | EFB2_01045 | | Diaminopimelate decarboxylase | 0.99 | EFB2_02665 | | Tryptophan synthase beta chain | low | > 86 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_10310 | lysA | diaminopimelate decarboxylase | 1.00 | BNILDI_18475 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS15930 | | diaminopimelate decarboxylase | 1.00 | ECOLIN_RS07600 | | tryptophan synthase subunit beta | low | > 52 |
| Escherichia coli ECRC101 | 0.99 | MCAODC_10470 | lysA | diaminopimelate decarboxylase | 1.00 | MCAODC_15595 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECRC102 | 0.99 | NIAGMN_17715 | lysA | diaminopimelate decarboxylase | 1.00 | NIAGMN_26840 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECRC101 | 0.99 | OKFHMN_19945 | lysA | diaminopimelate decarboxylase | 1.00 | OKFHMN_02670 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECRC98 | 0.99 | JDDGAC_23610 | lysA | diaminopimelate decarboxylase | 1.00 | JDDGAC_05215 | trpB | tryptophan synthase subunit beta | — | — |
| Enterobacter sp. TBS_079 | 0.90 | MPMX20_03705 | | Diaminopimelate decarboxylase | 0.96 | MPMX20_02513 | | Tryptophan synthase beta chain | 0.90 | 3 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.88 | GFF1323 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.97 | GFF2725 | | Tryptophan synthase beta chain (EC 4.2.1.20) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.88 | EX28DRAFT_2916 | | diaminopimelate decarboxylase | 0.95 | EX28DRAFT_0933 | | tryptophan synthase, beta subunit | low | > 76 |
| Klebsiella michiganensis M5al | 0.88 | BWI76_RS23360 | | diaminopimelate decarboxylase | 0.95 | BWI76_RS11845 | | tryptophan synthase subunit beta | 0.80 | 28 |
| Serratia liquefaciens MT49 | 0.78 | IAI46_20520 | | diaminopimelate decarboxylase | 0.91 | IAI46_14040 | | tryptophan synthase subunit beta | 0.50 | 64 |
| Pectobacterium carotovorum WPP14 | 0.77 | HER17_RS03710 | | diaminopimelate decarboxylase | 0.91 | HER17_RS10935 | | tryptophan synthase subunit beta | 0.95 | 24 |
| Erwinia tracheiphila SCR3 | 0.76 | LU632_RS06040 | lysA | diaminopimelate decarboxylase | 0.92 | LU632_RS12770 | trpB | tryptophan synthase subunit beta | low | > 74 |
| Dickeya dadantii 3937 | 0.75 | DDA3937_RS17425 | | diaminopimelate decarboxylase | 0.90 | DDA3937_RS10465 | | tryptophan synthase subunit beta | low | > 74 |
| Rahnella sp. WP5 | 0.75 | EX31_RS13275 | | diaminopimelate decarboxylase | 0.89 | EX31_RS09975 | | tryptophan synthase subunit beta | 0.96 | 15 |
| Dickeya dianthicola ME23 | 0.75 | DZA65_RS18550 | | diaminopimelate decarboxylase | 0.90 | DZA65_RS10945 | | tryptophan synthase subunit beta | 0.60 | 54 |
| Pantoea sp. MT58 | 0.75 | IAI47_03860 | | diaminopimelate decarboxylase | 0.89 | IAI47_09170 | | tryptophan synthase subunit beta | 0.92 | 37 |
| Dickeya dianthicola 67-19 | 0.74 | HGI48_RS17485 | | diaminopimelate decarboxylase | 0.90 | HGI48_RS10465 | | tryptophan synthase subunit beta | low | > 71 |
| Acidovorax sp. GW101-3H11 | 0.65 | Ac3H11_3862 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.51 | Ac3H11_1534 | | Tryptophan synthase beta chain (EC 4.2.1.20) | — | — |
| Burkholderia phytofirmans PsJN | 0.62 | BPHYT_RS35090 | | diaminopimelate decarboxylase | 0.53 | BPHYT_RS33875 | | tryptophan synthase subunit alpha | low | > 109 |
| Pseudomonas putida KT2440 | 0.57 | PP_2077 | | diaminopimelate decarboxylase | 0.53 | PP_0083 | | tryptophan synthase beta chain | low | > 96 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.26 | DVU2566 | lysA-2 | diaminopimelate decarboxylase (TIGR) | 0.54 | DVU0085 | trpB-1 | tryptophan synthase, beta subunit (TIGR) | low | > 55 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.26 | Echvi_1295 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 0.47 | Echvi_2510 | | tryptophan synthase, beta subunit | — | — |
| Lysobacter sp. OAE881 | 0.26 | ABIE51_RS13675 | | diaminopimelate decarboxylase | 0.52 | ABIE51_RS08260 | | tryptophan synthase subunit beta | low | > 62 |
| Desulfovibrio vulgaris Miyazaki F | 0.25 | DvMF_1010 | | diaminopimelate decarboxylase (RefSeq) | 0.55 | DvMF_1741 | | tryptophan synthase subunit beta (RefSeq) | low | > 51 |
| Rhodanobacter denitrificans MT42 | 0.25 | LRK55_RS11215 | | diaminopimelate decarboxylase | 0.52 | LRK55_RS01465 | | tryptophan synthase subunit beta | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.25 | LRK54_RS11485 | | diaminopimelate decarboxylase | 0.53 | LRK54_RS01685 | | tryptophan synthase subunit beta | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.24 | ABZR86_RS12130 | | diaminopimelate decarboxylase | 0.54 | ABZR86_RS08000 | | tryptophan synthase subunit beta | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.24 | OKGIIK_12375 | lysA | diaminopimelate decarboxylase | 0.53 | OKGIIK_04845 | trpB | tryptophan synthase subunit beta | low | > 52 |
| Caulobacter crescentus NA1000 | 0.23 | CCNA_02296 | | diaminopimelate decarboxylase | 0.52 | CCNA_03658 | | tryptophan synthase beta chain | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.23 | CCNA_02296 | | diaminopimelate decarboxylase | 0.52 | CCNA_03658 | | tryptophan synthase beta chain | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.23 | A4249_RS12545 | | diaminopimelate decarboxylase | 0.51 | A4249_RS11330 | | tryptophan synthase subunit beta | — | — |
| Bosea sp. OAE506 | 0.23 | ABIE41_RS08740 | | diaminopimelate decarboxylase | 0.52 | ABIE41_RS04270 | | tryptophan synthase subunit beta | — | — |
| Rhodopseudomonas palustris CGA009 | 0.22 | TX73_024635 | | diaminopimelate decarboxylase | 0.51 | TX73_000360 | | tryptophan synthase subunit beta | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.22 | Ga0059261_2051 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 0.54 | Ga0059261_0238 | | tryptophan synthase, beta subunit | — | — |
| Phaeobacter inhibens DSM 17395 | 0.22 | PGA1_c03470 | | diaminopimelate decarboxylase LysA | 0.55 | PGA1_c04870 | | tryptophan synthase beta chain | — | — |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_05819 | | Diaminopimelate decarboxylase | 0.51 | MPMX19_02736 | | Tryptophan synthase beta chain | — | — |
| Rhodospirillum rubrum S1H | 0.22 | Rru_A0396 | | Diaminopimelate decarboxylase (NCBI) | 0.53 | Rru_A3427 | | Tryptophan synthase, beta chain (NCBI) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.22 | AO353_09035 | | diaminopimelate decarboxylase | 0.52 | AO353_10710 | | tryptophan synthase subunit beta | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.21 | PfGW456L13_845 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.52 | PfGW456L13_566 | | Tryptophan synthase beta chain (EC 4.2.1.20) | 0.83 | 38 |
| Pseudomonas sp. RS175 | 0.21 | PFR28_04375 | | Diaminopimelate decarboxylase | 0.52 | PFR28_04715 | | Tryptophan synthase beta chain | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.21 | Pf1N1B4_2174 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.53 | Pf1N1B4_1831 | | Tryptophan synthase beta chain (EC 4.2.1.20) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.21 | AMB_RS22725 | | diaminopimelate decarboxylase | 0.52 | AMB_RS20295 | | tryptophan synthase subunit beta | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.21 | Psyr_0182 | | diaminopimelate decarboxylase | 0.53 | Psyr_0034 | | tryptophan synthase, beta chain | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.21 | Psyr_0182 | | diaminopimelate decarboxylase | 0.53 | Psyr_0034 | | tryptophan synthase, beta chain | — | — |
| Dechlorosoma suillum PS | 0.21 | Dsui_1182 | | diaminopimelate decarboxylase | 0.53 | Dsui_3192 | | tryptophan synthase, beta subunit | — | — |
| Dinoroseobacter shibae DFL-12 | 0.21 | Dshi_3059 | | diaminopimelate decarboxylase (RefSeq) | 0.52 | Dshi_1031 | | tryptophan synthase, beta subunit (RefSeq) | — | — |
| Pseudomonas fluorescens SBW25 | 0.21 | PFLU_RS29265 | | diaminopimelate decarboxylase | 0.53 | PFLU_RS00180 | | tryptophan synthase subunit beta | low | > 109 |
| Pseudomonas simiae WCS417 | 0.21 | PS417_27580 | | diaminopimelate decarboxylase | 0.53 | PS417_00185 | | tryptophan synthase subunit beta | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.21 | PFLU_RS29265 | | diaminopimelate decarboxylase | 0.53 | PFLU_RS00180 | | tryptophan synthase subunit beta | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.21 | Pf6N2E2_4419 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.52 | Pf6N2E2_4048 | | Tryptophan synthase beta chain (EC 4.2.1.20) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.20 | AO356_12740 | | diaminopimelate decarboxylase | 0.52 | AO356_10915 | | tryptophan synthase subunit beta | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.20 | RR42_RS19050 | | diaminopimelate decarboxylase | 0.54 | RR42_RS14360 | | tryptophan synthase subunit alpha | — | — |
| Azospirillum brasilense Sp245 | 0.20 | AZOBR_RS16945 | | diaminopimelate decarboxylase | 0.51 | AZOBR_RS00525 | | tryptophan synthase subunit beta | — | — |
| Ralstonia sp. UNC404CL21Col | 0.20 | ABZR87_RS02640 | | diaminopimelate decarboxylase | 0.53 | ABZR87_RS14500 | | tryptophan synthase subunit beta | 0.84 | 9 |
| Pseudomonas stutzeri RCH2 | 0.20 | Psest_3764 | | diaminopimelate decarboxylase | 0.52 | Psest_0063 | | tryptophan synthase, beta subunit | — | — |
| Pseudomonas sp. S08-1 | 0.20 | OH686_13800 | | diaminopimelate decarboxylase | 0.53 | OH686_12425 | | tryptophan synthase, beta subunit | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.20 | RPSI07_RS10250 | | diaminopimelate decarboxylase | 0.53 | RPSI07_RS14730 | | tryptophan synthase subunit beta | — | — |
| Rhizobium sp. OAE497 | 0.20 | ABIE40_RS17530 | | diaminopimelate decarboxylase | 0.53 | ABIE40_RS19335 | | tryptophan synthase subunit beta | — | — |
| Shewanella amazonensis SB2B | 0.20 | Sama_3250 | | diaminopimelate decarboxylase (RefSeq) | 0.79 | Sama_2133 | | tryptophan synthase subunit beta (RefSeq) | 0.90 | 49 |
| Ralstonia solanacearum IBSBF1503 | 0.20 | RALBFv3_RS06990 | | diaminopimelate decarboxylase | 0.54 | RALBFv3_RS02585 | | tryptophan synthase subunit beta | — | — |
| Ralstonia solanacearum GMI1000 | 0.20 | RS_RS14930 | | diaminopimelate decarboxylase | 0.53 | RS_RS09965 | | tryptophan synthase subunit beta | — | — |
| Ralstonia solanacearum UW163 | 0.20 | UW163_RS06625 | | diaminopimelate decarboxylase | 0.54 | UW163_RS11140 | | tryptophan synthase subunit beta | — | — |
| Agrobacterium fabrum C58 | 0.20 | Atu3601 | | diaminopimelate decarboxylase | 0.52 | Atu0018 | | tryptophan synthase beta subunit | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.19 | GFF1341 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.51 | GFF3355 | | Tryptophan synthase beta chain (EC 4.2.1.20) | low | > 90 |
| Marinobacter adhaerens HP15 | 0.19 | HP15_247 | | diaminopimelate decarboxylase | 0.54 | HP15_1827 | | tryptophan synthase, beta subunit | — | — |
| Shewanella sp. ANA-3 | 0.19 | Shewana3_0390 | | diaminopimelate decarboxylase (RefSeq) | 0.79 | Shewana3_1516 | | tryptophan synthase subunit beta (RefSeq) | 0.96 | 11 |
| Sinorhizobium meliloti 1021 | 0.19 | SMc00723 | | diaminopimelate DAP decarboxylase | 0.54 | SMc02766 | | tryptophan synthase subunit beta | — | — |
| Methanococcus maripaludis JJ | 0.19 | MMJJ_RS08170 | | diaminopimelate decarboxylase | 0.59 | MMJJ_RS09190 | | tryptophan synthase subunit beta | low | > 28 |
| Paraburkholderia graminis OAS925 | 0.19 | ABIE53_003749 | | diaminopimelate decarboxylase | 0.53 | ABIE53_004809 | | tryptophan synthase beta chain | — | — |
| Methanococcus maripaludis S2 | 0.19 | MMP_RS06180 | | diaminopimelate decarboxylase | 0.59 | MMP_RS05190 | | tryptophan synthase subunit beta | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.19 | QEN71_RS28080 | | diaminopimelate decarboxylase | 0.53 | QEN71_RS17645 | | tryptophan synthase subunit beta | 0.85 | 43 |
| Herbaspirillum seropedicae SmR1 | 0.19 | HSERO_RS00950 | | diaminopimelate decarboxylase | 0.49 | HSERO_RS16475 | | tryptophan synthase subunit alpha | — | — |
| Acinetobacter radioresistens SK82 | 0.19 | MPMX26_02232 | | Diaminopimelate decarboxylase | 0.51 | MPMX26_02617 | | Tryptophan synthase beta chain | 0.82 | 27 |
| Shewanella oneidensis MR-1 | 0.19 | SO4309 | lysA | diaminopimelate decarboxylase (NCBI ptt file) | 0.79 | SO3023 | trpB | tryptophan synthase, beta subunit (NCBI ptt file) | 0.93 | 47 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.18 | CA264_02390 | | diaminopimelate decarboxylase | 0.50 | CA264_05080 | | tryptophan synthase subunit beta | low | > 74 |
| Variovorax sp. SCN45 | 0.18 | GFF5315 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.52 | GFF3883 | | Tryptophan synthase beta chain (EC 4.2.1.20) | — | — |
| Shewanella loihica PV-4 | 0.18 | Shew_0322 | | diaminopimelate decarboxylase (RefSeq) | 0.79 | Shew_2255 | | tryptophan synthase subunit beta (RefSeq) | 0.92 | 42 |
| Vibrio cholerae E7946 ATCC 55056 | 0.18 | CSW01_00635 | | diaminopimelate decarboxylase | 0.81 | CSW01_05930 | | tryptophan synthase subunit beta | low | > 62 |
| Castellaniella sp019104865 MT123 | 0.18 | ABCV34_RS12685 | | diaminopimelate decarboxylase | 0.50 | ABCV34_RS08435 | | tryptophan synthase subunit beta | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.18 | H281DRAFT_05606 | | diaminopimelate decarboxylase | 0.53 | H281DRAFT_06067 | | tryptophan synthase, beta chain | — | — |
| Bacteroides stercoris CC31F | 0.18 | HMPREF1181_RS11050 | | diaminopimelate decarboxylase | 0.47 | HMPREF1181_RS15320 | | tryptophan synthase subunit beta | 0.88 | 39 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.18 | CA265_RS09650 | | diaminopimelate decarboxylase | 0.49 | CA265_RS05020 | | tryptophan synthase subunit beta | — | — |
| Variovorax sp. OAS795 | 0.18 | ABID97_RS23305 | | diaminopimelate decarboxylase | 0.51 | ABID97_RS08430 | | tryptophan synthase subunit beta | — | — |
| Parabacteroides merdae CL09T00C40 | 0.18 | HMPREF1078_RS13545 | | diaminopimelate decarboxylase | 0.48 | HMPREF1078_RS00150 | | tryptophan synthase subunit beta | 0.96 | 21 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.17 | BT1374 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 0.48 | BT0533 | | tryptophan synthase beta chain (NCBI ptt file) | 0.46 | 64 |
| Phocaeicola dorei CL03T12C01 | 0.17 | ABI39_RS19950 | | diaminopimelate decarboxylase | 0.46 | ABI39_RS21045 | | tryptophan synthase subunit beta | 0.67 | 14 |
| Phocaeicola vulgatus CL09T03C04 | 0.17 | HMPREF1058_RS06195 | | diaminopimelate decarboxylase | 0.47 | HMPREF1058_RS07170 | | tryptophan synthase subunit beta | low | > 67 |
| Bacteroides ovatus ATCC 8483 | 0.17 | BACOVA_00215 | | diaminopimelate decarboxylase | 0.47 | BACOVA_03779 | | tryptophan synthase, beta subunit | 0.91 | 47 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.16 | ABZR88_RS10180 | | diaminopimelate decarboxylase | 0.50 | ABZR88_RS10665 | | tryptophan synthase subunit beta | — | — |
| Alteromonas macleodii MIT1002 | 0.16 | MIT1002_00160 | | Diaminopimelate decarboxylase | 0.69 | MIT1002_01426 | | Tryptophan synthase beta chain | — | — |
| Mycobacterium tuberculosis H37Rv | 0.15 | Rv1293 | | Diaminopimelate decarboxylase LysA (DAP decarboxylase) | 0.51 | Rv1612 | | Tryptophan synthase, beta subunit TrpB | — | — |
| Synechococcus elongatus PCC 7942 | 0.15 | Synpcc7942_0262 | lysA | diaminopimelate decarboxylase | 0.55 | Synpcc7942_2143 | trpB | tryptophan synthase subunit beta | — | — |
Not shown: 0 genomes with orthologs for b2838 only; 2 genomes with orthologs for b1261 only