| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
|---|
| | Rhodopseudomonas palustris CGA009 | TX73_004885 | | methyltransferase | insig. | 100 | 100 |
| o | Bosea sp. OAE506 | ABIE41_RS22255 | | RNA methyltransferase | insig. | 52 | 100 |
| o | Agrobacterium fabrum C58 | Atu0735 | | RNA methyltransferase | insig. | 44 | 100 |
| o | Rhizobium sp. OAE497 | ABIE40_RS03880 | | class I SAM-dependent RNA methyltransferase | insig. | 44 | 100 |
| o | Caulobacter crescentus NA1000 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | sig. | 45 | 100 |
| o | Caulobacter crescentus NA1000 Δfur | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | cofit | 45 | 100 |
| o | Sinorhizobium meliloti 1021 | SMc00974 | | RNA methyltransferase | insig. | 43 | 99 |
| o | Dinoroseobacter shibae DFL-12 | Dshi_3492 | | (Uracil-5)-methyltransferase (RefSeq) | insig. | 46 | 99 |
| o | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS08425 | | class I SAM-dependent RNA methyltransferase | cofit | 42 | 100 |
| o | Phaeobacter inhibens DSM 17395 | PGA1_c34810 | | putative RNA methyltransferase | insig. | 41 | 99 |
| o | Azospirillum brasilense Sp245 | AZOBR_RS01195 | | RNA methyltransferase | insig. | 42 | 99 |
| o | Sphingomonas koreensis DSMZ 15582 | Ga0059261_0648 | | SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase | insig. | 40 | 99 |
| o | Azospirillum sp. SherDot2 | MPMX19_02196 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 39 | 99 |
| o | Magnetospirillum magneticum AMB-1 | AMB_RS01660 | | class I SAM-dependent RNA methyltransferase | insig. | 41 | 99 |
| o | Rhodospirillum rubrum S1H | Rru_A2107 | | 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) | no data | 38 | 99 |
| o | Shewanella amazonensis SB2B | Sama_1032 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | sig. | 32 | 99 |
| o | Shewanella oneidensis MR-1 | SO3456 | | RNA methyltransferase, TrmA family (NCBI ptt file) | strong | 29 | 99 |
| o | Shewanella sp. ANA-3 | Shewana3_1110 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | cofit | 29 | 99 |
| o | Shewanella loihica PV-4 | Shew_1201 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | cofit | 30 | 99 |
| o | Pantoea sp. MT58 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 32 | 99 |
| o | Enterobacter sp. TBS_079 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 32 | 96 |
| o | Erwinia tracheiphila SCR3 | LU632_RS06345 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 30 | 100 |
| o | Pectobacterium carotovorum WPP14 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 30 | 99 |
| o | Enterobacter asburiae PDN3 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | insig. | 31 | 96 |
| o | Vibrio cholerae E7946 ATCC 55056 | CSW01_12410 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 29 | 100 |
| o | Klebsiella michiganensis M5al | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | sig. | 30 | 99 |
| o | Serratia liquefaciens MT49 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 30 | 99 |
| o | Dickeya dadantii 3937 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 30 | 99 |
| o | Pseudomonas syringae pv. syringae B728a | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | insig. | 33 | 99 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | insig. | 33 | 99 |
| o | Dickeya dianthicola ME23 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 30 | 99 |
| o | Rahnella sp. WP5 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 30 | 99 |
| o | Escherichia coli BL21 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | insig. | 29 | 100 |
| o | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 29 | 100 |
| o | Escherichia coli BW25113 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | insig. | 29 | 100 |
| o | Escherichia coli ECOR27 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 29 | 100 |
| o | Acinetobacter radioresistens SK82 | MPMX26_00538 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 27 | 99 |
| o | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3669.1 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | insig. | 31 | 99 |
| o | Escherichia coli ECOR38 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 28 | 100 |
| o | Escherichia coli ECRC62 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 28 | 100 |
| o | Dickeya dianthicola 67-19 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 30 | 99 |
| o | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF4838 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | insig. | 29 | 100 |
| o | Escherichia coli ECRC100 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 28 | 100 |
| o | Escherichia coli ECRC101 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 28 | 100 |
| o | Escherichia coli ECRC102 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 28 | 100 |
| o | Escherichia coli ECRC98 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 28 | 100 |
| o | Escherichia coli ECRC99 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | no data | 28 | 100 |
| o | Pseudomonas stutzeri RCH2 | Psest_1639 | | 23S rRNA (uracil-5-)-methyltransferase RumA | insig. | 32 | 100 |
| o | Escherichia fergusonii Becca | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 28 | 100 |
| o | Escherichia coli Nissle 1917 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 28 | 100 |
| o | Pseudomonas sp. S08-1 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | cofit | 32 | 99 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | strong | 32 | 99 |
| o | Alteromonas macleodii MIT1002 | MIT1002_00793 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 28 | 100 |
| o | Pseudomonas simiae WCS417 | PS417_20155 | | 23S rRNA methyltransferase | insig. | 31 | 99 |
| o | Castellaniella sp019104865 MT123 | ABCV34_RS03050 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 32 | 100 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | strong | 31 | 99 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | strong | 31 | 99 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | sig. | 31 | 99 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_02715 | | 23S rRNA methyltransferase | sig. | 33 | 99 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_19055 | | 23S rRNA methyltransferase | insig. | 32 | 99 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | sig. | 31 | 99 |
| o | Lysobacter sp. OAE881 | ABIE51_RS13830 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 30 | 99 |
| o | Pseudomonas putida KT2440 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | strong | 31 | 99 |
| o | Pseudomonas sp. RS175 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | strong | 31 | 99 |
| o | Marinobacter adhaerens HP15 | HP15_790 | | 23S rRNA 5-methyluridine methyltransferase | insig. | 28 | 99 |
| o | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS07120 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 28 | 99 |
| o | Kangiella aquimarina DSM 16071 | B158DRAFT_2275 | | 23S rRNA (uracil-5-)-methyltransferase RumA | insig. | 26 | 99 |
| o | Dechlorosoma suillum PS | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | cofit | 29 | 99 |
| o | Rhodanobacter sp. FW510-T8 | OKGIIK_07840 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 28 | 99 |
| o | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS15245 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 28 | 95 |
| o | Ralstonia solanacearum UW163 | UW163_RS12710 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 28 | 95 |
| o | Herbaspirillum seropedicae SmR1 | HSERO_RS14825 | | 23S rRNA methyltransferase | insig. | 30 | 99 |
| o | Rhodanobacter denitrificans MT42 | LRK55_RS16715 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 28 | 98 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS10885 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 29 | 95 |
| o | Ralstonia solanacearum PSI07 | RPSI07_RS18130 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 29 | 95 |
| o | Synechococcus elongatus PCC 7942 | Synpcc7942_0241 | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA | cofit | 28 | 99 |
| o | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS17000 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | sig. | 28 | 98 |
| o | Desulfovibrio vulgaris Miyazaki F | DvMF_1383 | | RNA methyltransferase, TrmA family (RefSeq) | insig. | 28 | 99 |
| o | Cupriavidus basilensis FW507-4G11 | RR42_RS13170 | | 23S rRNA methyltransferase | insig. | 27 | 100 |
| o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | insig. | 27 | 100 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 27 | 97 |
| o | Ralstonia solanacearum GMI1000 | RS_RS06055 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | sig. | 28 | 95 |
| o | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0172 | | 23S rRNA (uracil-5-)-methyltransferase RumA | insig. | 26 | 99 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS09125 | | 23S rRNA methyltransferase | insig. | 27 | 100 |
| o | Desulfovibrio vulgaris Hildenborough JW710 | DVU0924 | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) | insig. | 28 | 100 |
| o | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS21250 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 25 | 99 |
| o | Acidovorax sp. GW101-3H11 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | insig. | 28 | 95 |
| o | Variovorax sp. SCN45 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | cofit | 29 | 99 |
| o | Bacteroides ovatus ATCC 8483 | BACOVA_02267 | | 23S rRNA (uracil-5-)-methyltransferase RumA | insig. | 23 | 99 |
| o | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | insig. | 28 | 99 |
| o | Fusobacterium nucleatum SB010 | HUW76_01255 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 22 | 97 |
| o | Phocaeicola dorei CL03T12C01 | ABI39_RS17490 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 24 | 100 |
| o | Bacteroides thetaiotaomicron VPI-5482 | BT0643 | | RNA methyltransferase (NCBI ptt file) | sig. | 24 | 96 |
| o | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS25340 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 24 | 100 |
| o | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS03720 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | strong | 24 | 100 |
| o | Bacteroides stercoris CC31F | HMPREF1181_RS16525 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | sig. | 22 | 99 |
| | Paraburkholderia graminis OAS925 | ABIE53_002060 | | tRNA/tmRNA/rRNA uracil-C5-methylase (TrmA/RlmC/RlmD family) | sig. | 28 | 68 |
| o | Bifidobacterium breve UCC2003 | BBR_RS16615 | | class I SAM-dependent RNA methyltransferase | strong | 28 | 100 |
| o | Mycobacterium tuberculosis H37Rv | Rv2689c | | Conserved alanine and valine and glycine rich protein | insig. | 28 | 99 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_02005 | | 23S rRNA (uracil-5-)-methyltransferase RumA | insig. | 25 | 100 |