Homologs of GFF776 from Sphingobium sp. HT1-2

RNA polymerase sigma-54 factor RpoN
SEED: RNA polymerase sigma-54 factor RpoN
KEGG: RNA polymerase sigma-54 factor

132 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF776 RNA polymerase sigma-54 factor RpoN strong 100 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2543 RNA polymerase, sigma 54 subunit, RpoN/SigL strong 67 99
o Xanthobacter sp. DMC5 GFF4467 RNA polymerase sigma-54 factor 2 strong 51 100
o Magnetospirillum magneticum AMB-1 AMB_RS19925 RNA polymerase sigma-54 factor no data 52 99
o Sinorhizobium meliloti 1021 SMc01139 RNA polymerase factor sigma-54 strong 49 100
o Rhodospirillum rubrum S1H Rru_A0010 Sigma-54 (RpoN) (NCBI) sig. 50 99
o Rhizobium sp. OAE497 ABIE40_RS01860 RNA polymerase factor sigma-54 strong 46 100
o Caulobacter crescentus NA1000 CCNA_03713 RNA polymerase sigma-54 factor rpoN strong 49 98
o Caulobacter crescentus NA1000 Δfur CCNA_03713 RNA polymerase sigma-54 factor rpoN cofit 49 98
o Azospirillum brasilense Sp245 AZOBR_RS18870 RNA polymerase sigma54 factor strong 47 99
o Bosea sp. OAE506 ABIE41_RS00125 RNA polymerase factor sigma-54 insig. 47 99
o Agrobacterium fabrum C58 Atu0332 RNA polymerase sigma-54 factor strong 46 100
  Rhodopseudomonas palustris CGA009 TX73_000260 RNA polymerase factor sigma-54 strong 55 74
o Azospirillum sp. SherDot2 MPMX19_02668 RNA polymerase sigma-54 factor 2 cofit 47 95
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS16075 RNA polymerase factor sigma-54 insig. 49 98
o Pseudomonas sp. BP01 JOY50_RS11130 RNA polymerase factor sigma-54 no data 38 98
o Pseudomonas putida KT2440 PP_0952 RNA polymerase sigma-54 factor no data 38 98
o Pseudomonas fluorescens SBW25 PFLU_RS04400 RNA polymerase factor sigma-54 no data 37 98
o Pseudomonas fluorescens SBW25-INTG PFLU_RS04400 RNA polymerase factor sigma-54 no data 37 98
o Pseudomonas syringae pv. syringae B728a Psyr_4147 RNA polymerase, sigma 54 subunit, RpoN/SigL no data 37 98
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4147 RNA polymerase, sigma 54 subunit, RpoN/SigL no data 37 98
o Pseudomonas fluorescens FW300-N2E3 AO353_05180 RNA polymerase sigma-54 factor no data 37 98
o Pseudomonas simiae WCS417 PS417_04345 RNA polymerase factor sigma-54 no data 37 98
o Pseudomonas segetis P6 ACVTMO_RS19120 RNA polymerase factor sigma-54 no data 38 98
o Pseudomonas sp. SVBP6 COO64_RS04285 RNA polymerase factor sigma-54 no data 38 98
o Pseudomonas sp. DMC3 GFF1828 RNA polymerase sigma-54 factor no data 38 96
o Pseudomonas stutzeri RCH2 Psest_3313 RNA polymerase sigma-54 factor no data 37 98
o Pseudomonas aeruginosa MRSN321 DY961_RS24165 RNA polymerase factor sigma-54 no data 37 98
o Pseudomonas aeruginosa PA14 IKLFDK_01770 RNA polymerase factor sigma-54 no data 37 98
o Pseudomonas aeruginosa PUPa3 DQ20_RS56625 RNA polymerase factor sigma-54 no data 37 98
o Pseudomonas fluorescens GW456-L13 PfGW456L13_5014 RNA polymerase sigma-54 factor RpoN no data 37 96
o Pseudomonas orientalis W4I3 QF045_RS07335 RNA polymerase factor sigma-54 no data 37 98
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01075 RNA polymerase sigma-54 factor no data 37 96
o Enterobacter asburiae PDN3 EX28DRAFT_3256 RNA polymerase, sigma 54 subunit, RpoN/SigL no data 36 97
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2946 RNA polymerase sigma-54 factor RpoN strong 37 97
o Pseudomonas fluorescens FW300-N2C3 AO356_07035 RNA polymerase sigma-54 factor no data 36 98
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1080 RNA polymerase sigma-54 factor RpoN no data 37 96
o Escherichia coli BW25113 b3202 rpoN DNA-directed RNA polymerase subunit N (NCBI) no data 37 97
o Pseudomonas sp. RS175 PFR28_00173 RNA polymerase sigma-54 factor no data 36 96
o Klebsiella michiganensis M5al BWI76_RS25265 RNA polymerase factor sigma-54 no data 36 97
o Escherichia coli BL21 ECD_03067 RNA polymerase, sigma 54 (sigma N) factor strong 37 97
o Escherichia fergusonii Becca EFB2_00621 RNA polymerase sigma-54 factor no data 37 97
o Escherichia coli ECOR27 NOLOHH_09740 rpoN RNA polymerase factor sigma-54 no data 37 97
o Escherichia coli ECOR38 HEPCGN_16815 rpoN RNA polymerase factor sigma-54 no data 37 97
o Escherichia coli ECRC100 OKFHMN_17940 rpoN RNA polymerase factor sigma-54 no data 37 97
o Escherichia coli ECRC101 MCAODC_08460 rpoN RNA polymerase factor sigma-54 no data 37 97
o Escherichia coli ECRC102 NIAGMN_15700 rpoN RNA polymerase factor sigma-54 no data 37 97
o Escherichia coli ECRC62 BNILDI_01795 rpoN RNA polymerase factor sigma-54 no data 37 97
o Escherichia coli ECRC98 JDDGAC_21565 rpoN RNA polymerase factor sigma-54 no data 37 97
o Escherichia coli ECRC99 KEDOAH_10210 rpoN RNA polymerase factor sigma-54 no data 37 97
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00498 RNA polymerase sigma-54 factor insig. 37 97
o Escherichia coli Nissle 1917 ECOLIN_RS18425 RNA polymerase factor sigma-54 no data 37 97
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3267 RNA polymerase sigma-54 factor RpoN no data 37 96
o Pseudomonas sp. S08-1 OH686_08540 RNA polymerase sigma-54 factor no data 36 98
o Klebsiella pneumoniae MKP103 KDGMDA_06080 RNA polymerase factor sigma-54 strong 36 97
o Klebsiella pneumoniae MRSN742743 KFA93_RS13335 rpoN;go_function=DNA-binding RNA polymerase factor sigma-54 strong 36 97
o Pectobacterium carotovorum WPP14 HER17_RS20060 RNA polymerase factor sigma-54 strong 37 97
o Enterobacter sp. TBS_079 MPMX20_04108 RNA polymerase sigma-54 factor no data 36 97
o Dickeya dianthicola 67-19 HGI48_RS01445 RNA polymerase factor sigma-54 cofit 36 97
o Dickeya dianthicola ME23 DZA65_RS01510 RNA polymerase factor sigma-54 strong 36 97
o Alteromonas macleodii MIT1002 MIT1002_00827 RNA polymerase sigma-54 factor 2 cofit 35 98
o Dickeya dadantii 3937 DDA3937_RS01530 RNA polymerase factor sigma-54 strong 36 97
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS09350 RNA polymerase factor sigma-54 cofit 36 97
o Serratia liquefaciens MT49 IAI46_22470 RNA polymerase factor sigma-54 cofit 36 97
o Erwinia amylovora T8 OLJFJH_07070 RNA polymerase factor sigma-54 strong 36 97
o Pantoea sp. MT58 IAI47_17185 RNA polymerase factor sigma-54 strong 36 97
o Rahnella sp. WP5 EX31_RS12400 RNA polymerase factor sigma-54 strong 36 97
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_13740 rpoN RNA polymerase factor sigma-54 cofit 36 97
o Erwinia tracheiphila SCR3 LU632_RS21280 rpoN RNA polymerase factor sigma-54 no data 36 97
o Vibrio cholerae E7946 ATCC 55056 CSW01_12815 RNA polymerase sigma-54 factor sig. 36 98
o Burkholderia phytofirmans PsJN BPHYT_RS02905 RNA polymerase subunit sigma-54 strong 39 95
o Dechlorosoma suillum PS Dsui_0704 RNA polymerase sigma-54 factor strong 36 98
o Paraburkholderia graminis OAS925 ABIE53_000718 RNA polymerase sigma-54 factor strong 38 95
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01927 RNA polymerase, sigma 54 subunit, RpoN/SigL strong 38 95
o Methylophilus sp. DMC18 GFF2777 RNA polymerase sigma-54 factor strong 35 97
o Cupriavidus basilensis FW507-4G11 RR42_RS02085 RNA polymerase subunit sigma-54 strong 38 96
o Herbaspirillum seropedicae SmR1 HSERO_RS19855 RNA polymerase subunit sigma-54 no data 36 95
o Marinobacter adhaerens HP15 HP15_2442 RNA polymerase, sigma 54 subunit, RpoN strong 35 98
o Acinetobacter radioresistens SK82 MPMX26_02592 RNA polymerase sigma-54 factor strong 37 96
o Desulfovibrio vulgaris Hildenborough JW710 DVU1628 rpoN RNA polymerase sigma-54 factor (TIGR) no data 37 98
o Ralstonia solanacearum PSI07 RPSI07_RS07850 RNA polymerase factor sigma-54 insig. 36 97
o Ralstonia sp. UNC404CL21Col ABZR87_RS23535 RNA polymerase factor sigma-54 strong 37 97
o Desulfovibrio vulgaris Miyazaki F DvMF_0427 RNA polymerase, sigma 54 subunit, RpoN (RefSeq) no data 36 98
  Ralstonia sp. UNC404CL21Col ABZR87_RS07060 RNA polymerase factor sigma-54 strong 37 95
o Shewanella oneidensis MR-1 SO3961 rpoN RNA polymerase sigma-54 factor (NCBI ptt file) strong 36 97
o Paraburkholderia sabiae LMG 24235 QEN71_RS01755 RNA polymerase factor sigma-54 strong 37 95
o Shewanella amazonensis SB2B Sama_3088 RNA polymerase factor sigma-54 (RefSeq) strong 38 97
o Shewanella sp. ANA-3 Shewana3_0672 RNA polymerase factor sigma-54 (RefSeq) strong 36 97
  Ralstonia solanacearum PSI07 RPSI07_RS22130 RNA polymerase factor sigma-54 cofit 37 95
o Shewanella loihica PV-4 Shew_3311 RNA polymerase factor sigma-54 (RefSeq) strong 37 97
o Ralstonia solanacearum GMI1000 RS_RS25120 RNA polymerase sigma-54 factor insig. 36 97
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS19815 RNA polymerase factor sigma-54 strong 38 98
  Ralstonia solanacearum GMI1000 RS_RS02020 RNA polymerase sigma-54 factor insig. 36 95
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS11170 RNA polymerase sigma-54 factor sig. 37 95
  Ralstonia solanacearum UW163 UW163_RS02410 RNA polymerase sigma-54 factor insig. 37 95
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3068 RNA polymerase sigma-54 factor RpoN strong 36 97
  Rhodanobacter denitrificans MT42 LRK55_RS12575 RNA polymerase factor sigma-54 cofit 38 98
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS12875 RNA polymerase factor sigma-54 strong 38 98
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS23300 RNA polymerase sigma-54 factor insig. 35 97
  Ralstonia solanacearum UW163 UW163_RS16550 RNA polymerase sigma-54 factor insig. 35 97
  Rhodanobacter sp. FW510-T8 OKGIIK_02265 RNA polymerase factor sigma-54 strong 36 98
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS15705 RNA polymerase factor sigma-54 strong 37 98
  Burkholderia phytofirmans PsJN BPHYT_RS27005 RNA polymerase sigma54 factor insig. 34 97
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02908 RNA polymerase, sigma 54 subunit, RpoN/SigL sig. 35 97
  Paraburkholderia graminis OAS925 ABIE53_005882 RNA polymerase sigma-54 factor strong 35 97
  Acidovorax sp. GW101-3H11 Ac3H11_727 RNA polymerase sigma-54 factor RpoN strong 34 98
  Paraburkholderia sabiae LMG 24235 QEN71_RS10760 RNA polymerase factor sigma-54 insig. 34 98
  Acinetobacter baumannii LAC-4 RR41_RS15830 RNA polymerase factor sigma-54 insig. 34 96
  Kangiella aquimarina DSM 16071 B158DRAFT_2080 RNA polymerase, sigma 54 subunit, RpoN/SigL insig. 30 98
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1662.1 RNA polymerase sigma-54 factor RpoN strong 36 97
  Variovorax sp. OAS795 ABID97_RS04780 RNA polymerase factor sigma-54 no data 33 97
  Variovorax sp. SCN45 GFF6290 RNA polymerase sigma-54 factor RpoN strong 34 97
  Lysobacter sp. OAE881 ABIE51_RS15955 RNA polymerase factor sigma-54 strong 36 98
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3646 RNA polymerase sigma-54 factor RpoN insig. 33 99
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0071 RNA polymerase sigma-54 factor no data 32 96
  Variovorax sp. OAS795 ABID97_RS11945 RNA polymerase factor sigma-54 insig. 33 97
  Castellaniella sp019104865 MT123 ABCV34_RS12430 RNA polymerase factor sigma-54 strong 33 97
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2798.1 RNA polymerase sigma-54 factor RpoN insig. 33 96
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11005 RNA polymerase sigma-54 factor no data 30 93
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05920 RNA polymerase factor sigma-54 cofit 33 93
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS14570 RNA polymerase factor sigma-54 no data 29 96
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_18070 RNA polymerase sigma-54 factor no data 31 96
  Lysobacter sp. OAE881 ABIE51_RS16760 RNA polymerase factor sigma-54 cofit 35 97
  Cellulophaga baltica 18 M666_RS07505 RNA polymerase factor sigma-54 no data 29 98
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12505 RNA polymerase factor sigma-54 strong 29 95
  Phocaeicola dorei CL03T12C01 ABI39_RS04230 RNA polymerase factor sigma-54 strong 29 95
  Bacteroides stercoris CC31F HMPREF1181_RS00925 RNA polymerase factor sigma-54 no data 27 93
  Bacteroides ovatus ATCC 8483 BACOVA_01616 RNA polymerase sigma-54 factor no data 27 94
  Bacteroides thetaiotaomicron VPI-5482 BT2521 RNA polymerase sigma-54 (NCBI ptt file) no data 27 94
  Dinoroseobacter shibae DFL-12 Dshi_3584 RNA polymerase, sigma 54 subunit, RpoN (RefSeq) insig. 35 69
  Fusobacterium nucleatum SB010 HUW76_06300 RNA polymerase factor sigma-54 cofit 27 66
  Sinorhizobium meliloti 1021 SMa0824 hypothetical protein insig. 63 6