Homologs of GFF5151 from Sphingobium sp. HT1-2

RNA polymerase ECF-type sigma factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF5151 RNA polymerase ECF-type sigma factor cofit 100 100
  Sphingobium sp. HT1-2 GFF4975 RNA polymerase ECF-type sigma factor cofit 95 100
  Sphingobium sp. HT1-2 GFF2317 RNA polymerase ECF-type sigma factor cofit 70 85
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 61 92
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3492 RNA polymerase sigma factor, sigma-70 family strong 64 90
  Caulobacter crescentus NA1000 CCNA_03589 RNA polymerase EcfG family sigma factor sigT strong 48 85
  Caulobacter crescentus NA1000 Δfur CCNA_03589 RNA polymerase EcfG family sigma factor sigT cofit 48 85
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14775 sigma-70 family RNA polymerase sigma factor strong 51 80
  Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 53 75
  Caulobacter crescentus NA1000 CCNA_02977 RNA polymerase ECF-type sigma factor sigU strong 51 71
  Caulobacter crescentus NA1000 Δfur CCNA_02977 RNA polymerase ECF-type sigma factor sigU cofit 51 71
  Agrobacterium fabrum C58 Atu4160 RNA polymerase sigma factor strong 51 74
  Sinorhizobium meliloti 1021 SMc01506 RNA polymerase sigma factor strong 53 71
  Rhizobium sp. OAE497 ABIE40_RS14450 RNA polymerase sigma factor insig. 53 70
  Rhodospirillum rubrum S1H Rru_A3287 Sigma-24 (FecI) (NCBI) no data 46 78
  Xanthobacter sp. DMC5 GFF2321 ECF RNA polymerase sigma factor EcfG no data 52 66
  Dinoroseobacter shibae DFL-12 Dshi_3835 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 52 66
  Rhodopseudomonas palustris CGA009 TX73_021900 sigma-70 family RNA polymerase sigma factor strong 53 72
  Phaeobacter inhibens DSM 17395 PGA1_c27070 RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup) insig. 50 66
  Sphingobium sp. HT1-2 GFF5325 RNA polymerase ECF-type sigma factor cofit 46 74
  Azospirillum sp. SherDot2 MPMX19_01371 hypothetical protein insig. 46 68
  Azospirillum brasilense Sp245 AZOBR_RS06360 RNA polymerase subunit sigma-24 no data 46 72
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05124 RNA polymerase sigma-70 factor, ECF subfamily insig. 44 74
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 44 70
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06547 RNA polymerase sigma-70 factor, ECF subfamily insig. 44 67
  Paraburkholderia graminis OAS925 ABIE53_002425 RNA polymerase sigma-70 factor (ECF subfamily) insig. 44 70
  Agrobacterium fabrum C58 Atu5490 ECF family RNA polymerase sigma factor insig. 42 70
  Burkholderia phytofirmans PsJN BPHYT_RS08240 RNA polymerase subunit sigma-24 sig. 42 71
  Paraburkholderia sabiae LMG 24235 QEN71_RS23005 sigma-70 family RNA polymerase sigma factor insig. 40 74
  Paraburkholderia graminis OAS925 ABIE53_006215 RNA polymerase sigma-70 factor (ECF subfamily) insig. 43 67
  Burkholderia phytofirmans PsJN BPHYT_RS24740 RNA polymerase subunit sigma-24 sig. 41 67
  Paraburkholderia sabiae LMG 24235 QEN71_RS00095 RNA polymerase sigma factor insig. 40 67
  Azospirillum sp. SherDot2 MPMX19_00764 ECF RNA polymerase sigma factor EcfG insig. 41 72
  Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 41 66
  Sinorhizobium meliloti 1021 SM_b21484 RNA polymerase sigma-E factor (sigma-24) protein insig. 39 77
  Cupriavidus basilensis FW507-4G11 RR42_RS32410 RNA polymerase subunit sigma-24 no data 44 68
  Rhizobium sp. OAE497 ABIE40_RS27415 sigma-70 family RNA polymerase sigma factor insig. 44 65
  Variovorax sp. SCN45 GFF215 RNA polymerase sigma-54 factor RpoN insig. 39 68
  Pseudomonas sp. DMC3 GFF1465 ECF RNA polymerase sigma factor EcfG insig. 40 71
  Sphingobium sp. HT1-2 GFF1466 RNA polymerase sigma-54 factor RpoN insig. 40 70
  Rhizobium sp. OAE497 ABIE40_RS21790 sigma-70 family RNA polymerase sigma factor cofit 39 70
  Sphingobium sp. HT1-2 GFF2028 hypothetical protein cofit 41 68
  Azospirillum sp. SherDot2 MPMX19_00923 hypothetical protein insig. 40 80
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19215 RNA polymerase subunit sigma sig. 37 71
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05041 RNA polymerase sigma-70 factor, ECF subfamily insig. 37 72
  Rhizobium sp. OAE497 ABIE40_RS20320 sigma-70 family RNA polymerase sigma factor insig. 40 64
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4350 RNA polymerase sigma-54 factor RpoN insig. 39 68
  Variovorax sp. OAS795 ABID97_RS16445 sigma-70 family RNA polymerase sigma factor no data 37 70
  Azospirillum brasilense Sp245 AZOBR_RS11020 RNA polymerase subunit sigma-70 no data 45 70
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3977 RNA polymerase sigma-54 factor RpoN insig. 41 69
  Pseudomonas lactucae CFBP13502 GEMAOFIL_03722 ECF RNA polymerase sigma factor EcfG no data 40 71
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2200 RNA polymerase sigma-54 factor RpoN sig. 39 70
  Alteromonas macleodii MIT1002 MIT1002_03872 RNA polymerase sigma factor SigM insig. 34 70
  Pseudomonas orientalis W4I3 QF045_RS18740 sigma-70 family RNA polymerase sigma factor insig. 39 71
  Bacteroides thetaiotaomicron VPI-5482 BT2569 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 34 72
  Pseudomonas simiae WCS417 PS417_17070 RNA polymerase subunit sigma-24 insig. 40 71
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2582 RNA polymerase sigma-54 factor RpoN insig. 40 69
  Bacteroides ovatus ATCC 8483 BACOVA_01848 Sigma-70 region 2 strong 33 70
  Pseudomonas sp. RS175 PFR28_01251 ECF RNA polymerase sigma factor EcfG insig. 38 71
  Bacteroides thetaiotaomicron VPI-5482 BT1197 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 35 70
  Bacteroides stercoris CC31F HMPREF1181_RS02840 RNA polymerase sigma factor sig. 33 72
  Phocaeicola dorei CL03T12C01 ABI39_RS17450 RNA polymerase sigma factor strong 32 72
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03770 RNA polymerase sigma factor strong 32 72
  Bacteroides ovatus ATCC 8483 BACOVA_03979 Sigma-70 region 2 strong 36 70
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS05410 RNA polymerase sigma factor strong 33 72
  Bacteroides thetaiotaomicron VPI-5482 BT3457 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 33 70
  Pseudomonas fluorescens FW300-N2C3 AO356_01625 RNA polymerase subunit sigma-24 insig. 39 69
  Pseudomonas fluorescens SBW25 PFLU_RS19010 sigma-70 family RNA polymerase sigma factor insig. 38 71
  Pseudomonas fluorescens SBW25-INTG PFLU_RS19010 sigma-70 family RNA polymerase sigma factor sig. 38 71
  Paraburkholderia graminis OAS925 ABIE53_003919 RNA polymerase sigma-70 factor (ECF subfamily) insig. 36 67
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS07010 RNA polymerase sigma factor no data 36 72
  Ralstonia solanacearum UW163 UW163_RS06605 RNA polymerase sigma factor no data 36 72
  Ralstonia solanacearum PSI07 RPSI07_RS10230 RNA polymerase sigma factor no data 35 71
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF329 RNA polymerase sigma-54 factor RpoN insig. 36 70
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0287 RNA polymerase sigma factor, sigma-70 family strong 33 76
  Pseudomonas fluorescens FW300-N2E3 AO353_20305 RNA polymerase subunit sigma-24 no data 37 71
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12805 RNA polymerase sigma factor strong 32 70
  Magnetospirillum magneticum AMB-1 AMB_RS13315 hypothetical protein insig. 38 71
  Enterobacter asburiae PDN3 EX28DRAFT_2729 RNA polymerase sigma factor, sigma-70 family insig. 35 70
  Bacteroides stercoris CC31F HMPREF1181_RS16950 RNA polymerase sigma factor strong 33 70
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11995 RNA polymerase subunit sigma insig. 31 72
  Azospirillum sp. SherDot2 MPMX19_01197 ECF RNA polymerase sigma factor EcfG insig. 33 70
  Agrobacterium fabrum C58 Atu1485 ECF family sigma factor insig. 35 68
  Ralstonia solanacearum GMI1000 RS_RS14950 RNA polymerase sigma factor no data 35 71
  Paraburkholderia graminis OAS925 ABIE53_003943 RNA polymerase sigma-70 factor (ECF subfamily) sig. 33 72
  Bacteroides ovatus ATCC 8483 BACOVA_02205 Sigma-70 region 2 sig. 32 70
  Phocaeicola dorei CL03T12C01 ABI39_RS07815 RNA polymerase sigma factor strong 31 70
  Paraburkholderia sabiae LMG 24235 QEN71_RS32245 RNA polymerase sigma factor insig. 34 72
  Azospirillum brasilense Sp245 AZOBR_RS14755 RNA polymerase sigma-70 factor insig. 33 70
  Azospirillum brasilense Sp245 AZOBR_RS23735 RNA polymerase no data 35 68
  Sphingobium sp. HT1-2 GFF4551 hypothetical protein cofit 35 70
  Agrobacterium fabrum C58 Atu5283 ECF family RNA polymerase sigma factor no data 42 53
  Herbaspirillum seropedicae SmR1 HSERO_RS13530 RNA polymerase subunit sigma-24 no data 37 69
  Sinorhizobium meliloti 1021 SMc01419 RNA polymerase sigma factor protein sig. 33 78
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1476 RNA polymerase sigma factor, sigma-70 family insig. 29 70
  Ralstonia sp. UNC404CL21Col ABZR87_RS02660 RNA polymerase sigma factor insig. 34 69
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS16550 RNA polymerase sigma factor strong 30 72
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24230 RNA polymerase sigma factor strong 30 78
  Dickeya dadantii 3937 DDA3937_RS11055 sigma-70 family RNA polymerase sigma factor insig. 34 70
  Dickeya dianthicola 67-19 HGI48_RS11075 sigma-70 family RNA polymerase sigma factor insig. 34 70