Homologs of GFF100 from Sphingobium sp. HT1-2

Pyridoxal 5-phosphate (PLP)-dependent ornithine decarboxylase (EC 4.1.1.17)
SEED: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
KEGG: ornithine decarboxylase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF100 Pyridoxal 5-phosphate (PLP)-dependent ornithine decarboxylase (EC 4.1.1.17) no data 100 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3753 Diaminopimelate decarboxylase no data 74 96
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14915 type III PLP-dependent enzyme no data 54 96
o Caulobacter crescentus NA1000 CCNA_00365 ornithine decarboxylase no data 53 99
o Caulobacter crescentus NA1000 Δfur CCNA_00365 ornithine decarboxylase no data 53 99
o Azospirillum brasilense Sp245 AZOBR_RS10225 diaminopimelate decarboxylase insig. 47 94
o Magnetospirillum magneticum AMB-1 AMB_RS05600 type III PLP-dependent enzyme insig. 49 92
o Azospirillum sp. SherDot2 MPMX19_01174 Diaminopimelate decarboxylase insig. 47 94
o Pseudomonas syringae pv. syringae B728a Psyr_2547 Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2 insig. 35 88
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2547 Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2 insig. 35 88
o Xanthobacter sp. DMC5 GFF4658 Diaminopimelate decarboxylase insig. 36 91
o Phaeobacter inhibens DSM 17395 PGA1_c11650 putative lysine/ornithine decarboxylase insig. 33 88
  Azospirillum sp. SherDot2 MPMX19_00433 Lysine/ornithine decarboxylase insig. 31 88
  Azospirillum brasilense Sp245 AZOBR_RS00105 ornithine decarboxylase strong 30 89
o Rhizobium sp. OAE497 ABIE40_RS16685 ornithine/lysine decarboxylase no data 28 88
o Agrobacterium fabrum C58 Atu3196 ornithine decarboxylase no data 27 88
  Magnetospirillum magneticum AMB-1 AMB_RS07020 type III PLP-dependent enzyme insig. 29 81
  Xanthobacter sp. DMC5 GFF4005 Lysine/ornithine decarboxylase sig. 31 81
o Bosea sp. OAE506 ABIE41_RS08335 type III PLP-dependent enzyme no data 29 87
o Rhodopseudomonas palustris CGA009 TX73_004485 type III PLP-dependent enzyme sig. 28 85
  Phaeobacter inhibens DSM 17395 PGA1_c03800 putative lysine/ornithine decarboxylase strong 29 87
o Pseudomonas aeruginosa MRSN321 DY961_RS23875 type III PLP-dependent enzyme insig. 30 87
o Pseudomonas aeruginosa PA14 IKLFDK_01485 ornithine decarboxylase insig. 30 87
o Pseudomonas aeruginosa PUPa3 DQ20_RS56340 type III PLP-dependent enzyme insig. 30 87
o Sinorhizobium meliloti 1021 SMc02983 ornithine, DAP, or arginine decarboxylase strong 27 88
  Rhodospirillum rubrum S1H Rru_A1693 Orn/DAP/Arg decarboxylase 2 (NCBI) insig. 29 81
o Pseudomonas stutzeri RCH2 Psest_3350 Diaminopimelate decarboxylase sig. 29 87
  Shewanella amazonensis SB2B Sama_0410 ornithine decarboxylase (RefSeq) insig. 29 88
o Pseudomonas sp. RS175 PFR28_00113 Lysine/ornithine decarboxylase insig. 29 81
  Pseudomonas fluorescens SBW25 PFLU_RS04045 type III PLP-dependent enzyme cofit 29 81
  Pseudomonas fluorescens SBW25-INTG PFLU_RS04045 type III PLP-dependent enzyme sig. 29 81
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01006 Lysine/ornithine decarboxylase cofit 29 81
  Pseudomonas orientalis W4I3 QF045_RS06990 type III PLP-dependent enzyme insig. 29 81
  Pseudomonas sp. DMC3 GFF5011 Lysine/ornithine decarboxylase cofit 29 81
  Pseudomonas syringae pv. syringae B728a Psyr_4247 ornithine decarboxylase insig. 29 81
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4247 ornithine decarboxylase insig. 29 81
  Pseudomonas segetis P6 MPMX49_03891 Lysine/ornithine decarboxylase insig. 28 87
o Pseudomonas sp. S08-1 OH686_08755 Pyridoxal 5-phosphate (PLP)-dependent ornithine decarboxylase cofit 28 87
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3334 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) sig. 29 81
o Pseudomonas fluorescens FW300-N2C3 AO356_07310 ornithine decarboxylase insig. 29 81
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1136 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) insig. 29 81
  Pseudomonas simiae WCS417 PS417_04005 ornithine decarboxylase sig. 29 81
  Pseudomonas sp. BP01 JOY50_RS22710 type III PLP-dependent enzyme insig. 28 87
  Pseudomonas putida KT2440 PP_0864 ornithine decarboxylase sig. 28 87
  Shewanella loihica PV-4 Shew_3392 ornithine decarboxylase (RefSeq) insig. 27 89
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5067 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) strong 29 81
  Pseudomonas fluorescens FW300-N2E3 AO353_05445 ornithine decarboxylase insig. 28 81
  Pseudomonas sp. SVBP6 COO64_RS04020 type III PLP-dependent enzyme insig. 28 87
  Shewanella oneidensis MR-1 SO4136 decarboxylase, pyridoxal-dependent (NCBI ptt file) sig. 27 89
  Marinobacter adhaerens HP15 HP15_3785 ornithine decarboxylase insig. 27 87
o Dinoroseobacter shibae DFL-12 Dshi_1375 Ornithine decarboxylase (RefSeq) insig. 29 81
  Rhodanobacter denitrificans MT42 LRK55_RS11215 diaminopimelate decarboxylase insig. 28 88
  Shewanella sp. ANA-3 Shewana3_3682 ornithine decarboxylase (RefSeq) insig. 27 88
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS11485 diaminopimelate decarboxylase insig. 28 88
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS17040 diaminopimelate decarboxylase insig. 29 81
  Rhodanobacter sp. FW510-T8 OKGIIK_12375 lysA diaminopimelate decarboxylase insig. 28 80
  Marinobacter adhaerens HP15 HP15_247 diaminopimelate decarboxylase no data 26 88
  Pseudomonas syringae pv. syringae B728a Psyr_0182 diaminopimelate decarboxylase no data 26 96
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0182 diaminopimelate decarboxylase no data 26 96
  Lysobacter sp. OAE881 ABIE51_RS13675 diaminopimelate decarboxylase insig. 26 89
  Pseudomonas sp. RS175 PFR28_04375 Diaminopimelate decarboxylase no data 25 90
  Bacteroides ovatus ATCC 8483 BACOVA_00215 diaminopimelate decarboxylase strong 25 84
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS19560 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) strong 27 80
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS12130 diaminopimelate decarboxylase insig. 28 80
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05654 Diaminopimelate decarboxylase strong 25 92
  Phaeobacter inhibens DSM 17395 PGA1_c13710 diaminopimelate decarboxylase-like protein insig. 23 83
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) no data 25 90
  Lysobacter sp. OAE881 ABIE51_RS15655 bifunctional aspartate kinase/diaminopimelate decarboxylase no data 28 81
  Kangiella aquimarina DSM 16071 B158DRAFT_1161 aspartate kinase (EC 2.7.2.4) insig. 27 80
  Bacteroides thetaiotaomicron VPI-5482 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) strong 26 84
  Pseudomonas orientalis W4I3 QF045_RS01945 diaminopimelate decarboxylase strong 26 96
  Vibrio cholerae E7946 ATCC 55056 CSW01_00635 diaminopimelate decarboxylase insig. 25 82
  Shewanella sp. ANA-3 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) strong 27 81
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS10180 diaminopimelate decarboxylase no data 27 80
  Pseudomonas fluorescens FW300-N2C3 AO356_12740 diaminopimelate decarboxylase no data 25 96
  Pseudomonas fluorescens SBW25 PFLU_RS29265 diaminopimelate decarboxylase cofit 27 92
  Pseudomonas fluorescens SBW25-INTG PFLU_RS29265 diaminopimelate decarboxylase no data 27 92
  Pseudomonas aeruginosa MRSN321 DY961_RS12270 lysA;go_function=diaminopimelate diaminopimelate decarboxylase strong 25 96
  Pseudomonas aeruginosa PUPa3 DQ20_RS49855 lysA;go_function=diaminopimelate diaminopimelate decarboxylase strong 25 96
  Alteromonas macleodii MIT1002 MIT1002_00160 Diaminopimelate decarboxylase strong 26 81
  Pseudomonas simiae WCS417 PS417_27580 diaminopimelate decarboxylase no data 26 92
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS15945 bifunctional aspartate kinase/diaminopimelate decarboxylase strong 26 80
  Pseudomonas aeruginosa PA14 IKLFDK_27065 diaminopimelate decarboxylase strong 25 96
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) no data 24 90
  Methylophilus sp. DMC18 GFF2209 Diaminopimelate decarboxylase no data 27 80
  Pseudomonas fluorescens GW456-L13 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) strong 24 90
  Dechlorosoma suillum PS Dsui_1182 diaminopimelate decarboxylase no data 25 90
  Rhodanobacter denitrificans MT42 LRK55_RS12365 bifunctional aspartate kinase/diaminopimelate decarboxylase cofit 26 80
  Pseudomonas sp. DMC3 GFF367 Diaminopimelate decarboxylase no data 24 90
  Magnetospirillum magneticum AMB-1 AMB_RS22725 diaminopimelate decarboxylase no data 26 80
  Pseudomonas segetis P6 MPMX49_04533 Diaminopimelate decarboxylase strong 25 80
  Bacteroides stercoris CC31F HMPREF1181_RS11050 diaminopimelate decarboxylase strong 25 82
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS09650 diaminopimelate decarboxylase strong 27 80
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS06990 diaminopimelate decarboxylase no data 27 81
  Ralstonia solanacearum UW163 UW163_RS06625 diaminopimelate decarboxylase no data 27 81
  Ralstonia solanacearum PSI07 RPSI07_RS10250 diaminopimelate decarboxylase no data 26 82
  Shewanella oneidensis MR-1 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) strong 26 81
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13545 diaminopimelate decarboxylase strong 24 80
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS12625 bifunctional aspartate kinase/diaminopimelate decarboxylase strong 26 80
  Shewanella amazonensis SB2B Sama_3250 diaminopimelate decarboxylase (RefSeq) strong 26 80