Homologs of GFF100 from Sphingobium sp. HT1-2

Pyridoxal 5-phosphate (PLP)-dependent ornithine decarboxylase (EC 4.1.1.17)
SEED: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
KEGG: ornithine decarboxylase

177 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF100 Pyridoxal 5-phosphate (PLP)-dependent ornithine decarboxylase (EC 4.1.1.17) no data 100 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3753 Diaminopimelate decarboxylase no data 74 96
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14915 type III PLP-dependent enzyme no data 54 96
o Caulobacter crescentus NA1000 CCNA_00365 ornithine decarboxylase no data 53 99
o Caulobacter crescentus NA1000 Δfur CCNA_00365 ornithine decarboxylase no data 53 99
o Azospirillum brasilense Sp245 AZOBR_RS10225 diaminopimelate decarboxylase insig. 47 94
o Magnetospirillum magneticum AMB-1 AMB_RS05600 type III PLP-dependent enzyme insig. 49 92
o Azospirillum sp. SherDot2 MPMX19_01174 Diaminopimelate decarboxylase insig. 47 94
  Pseudomonas syringae pv. syringae B728a Psyr_2547 Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2 insig. 35 88
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2547 Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2 insig. 35 88
  Xanthobacter sp. DMC5 GFF4658 Diaminopimelate decarboxylase insig. 36 91
  Phaeobacter inhibens DSM 17395 PGA1_c11650 putative lysine/ornithine decarboxylase insig. 33 88
  Azospirillum sp. SherDot2 MPMX19_00433 Lysine/ornithine decarboxylase insig. 31 88
  Azospirillum brasilense Sp245 AZOBR_RS00105 ornithine decarboxylase strong 30 89
  Rhizobium sp. OAE497 ABIE40_RS16685 ornithine/lysine decarboxylase no data 28 88
  Agrobacterium fabrum C58 Atu3196 ornithine decarboxylase no data 27 88
  Magnetospirillum magneticum AMB-1 AMB_RS07020 type III PLP-dependent enzyme insig. 29 81
  Xanthobacter sp. DMC5 GFF4005 Lysine/ornithine decarboxylase sig. 31 81
  Bosea sp. OAE506 ABIE41_RS08335 type III PLP-dependent enzyme no data 29 87
  Rhodopseudomonas palustris CGA009 TX73_004485 type III PLP-dependent enzyme sig. 28 85
  Phaeobacter inhibens DSM 17395 PGA1_c03800 putative lysine/ornithine decarboxylase strong 29 87
  Pseudomonas aeruginosa MRSN321 DY961_RS23875 type III PLP-dependent enzyme insig. 30 87
  Pseudomonas aeruginosa PA14 IKLFDK_01485 ornithine decarboxylase insig. 30 87
  Pseudomonas aeruginosa PUPa3 DQ20_RS56340 type III PLP-dependent enzyme insig. 30 87
  Sinorhizobium meliloti 1021 SMc02983 ornithine, DAP, or arginine decarboxylase strong 27 88
  Rhodospirillum rubrum S1H Rru_A1693 Orn/DAP/Arg decarboxylase 2 (NCBI) insig. 29 81
  Pseudomonas stutzeri RCH2 Psest_3350 Diaminopimelate decarboxylase sig. 29 87
  Shewanella amazonensis SB2B Sama_0410 ornithine decarboxylase (RefSeq) insig. 29 88
  Pseudomonas sp. RS175 PFR28_00113 Lysine/ornithine decarboxylase insig. 29 81
  Pseudomonas fluorescens SBW25 PFLU_RS04045 type III PLP-dependent enzyme cofit 29 81
  Pseudomonas fluorescens SBW25-INTG PFLU_RS04045 type III PLP-dependent enzyme sig. 29 81
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01006 Lysine/ornithine decarboxylase cofit 29 81
  Pseudomonas orientalis W4I3 QF045_RS06990 type III PLP-dependent enzyme insig. 29 81
  Pseudomonas sp. DMC3 GFF5011 Lysine/ornithine decarboxylase cofit 29 81
  Pseudomonas syringae pv. syringae B728a Psyr_4247 ornithine decarboxylase insig. 29 81
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4247 ornithine decarboxylase insig. 29 81
  Pseudomonas segetis P6 ACVTMO_RS19280 type III PLP-dependent enzyme insig. 28 87
  Pseudomonas sp. S08-1 OH686_08755 Pyridoxal 5-phosphate (PLP)-dependent ornithine decarboxylase cofit 28 87
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3334 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) sig. 29 81
  Pseudomonas fluorescens FW300-N2C3 AO356_07310 ornithine decarboxylase insig. 29 81
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1136 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) insig. 29 81
  Pseudomonas simiae WCS417 PS417_04005 ornithine decarboxylase sig. 29 81
  Pseudomonas sp. BP01 JOY50_RS22710 type III PLP-dependent enzyme insig. 28 87
  Pseudomonas putida KT2440 PP_0864 ornithine decarboxylase sig. 28 87
  Shewanella loihica PV-4 Shew_3392 ornithine decarboxylase (RefSeq) insig. 27 89
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5067 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) strong 29 81
  Pseudomonas fluorescens FW300-N2E3 AO353_05445 ornithine decarboxylase insig. 28 81
  Pseudomonas sp. SVBP6 COO64_RS04020 type III PLP-dependent enzyme insig. 28 87
  Shewanella oneidensis MR-1 SO4136 decarboxylase, pyridoxal-dependent (NCBI ptt file) sig. 27 89
  Marinobacter adhaerens HP15 HP15_3785 ornithine decarboxylase insig. 27 87
  Dinoroseobacter shibae DFL-12 Dshi_1375 Ornithine decarboxylase (RefSeq) insig. 29 81
  Rhodanobacter denitrificans MT42 LRK55_RS11215 diaminopimelate decarboxylase insig. 28 88
  Shewanella sp. ANA-3 Shewana3_3682 ornithine decarboxylase (RefSeq) insig. 27 88
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS11485 diaminopimelate decarboxylase insig. 28 88
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS17040 diaminopimelate decarboxylase insig. 29 81
  Rhodanobacter sp. FW510-T8 OKGIIK_12375 lysA diaminopimelate decarboxylase insig. 28 80
  Marinobacter adhaerens HP15 HP15_247 diaminopimelate decarboxylase no data 26 88
  Pseudomonas syringae pv. syringae B728a Psyr_0182 diaminopimelate decarboxylase no data 26 96
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0182 diaminopimelate decarboxylase no data 26 96
  Lysobacter sp. OAE881 ABIE51_RS13675 diaminopimelate decarboxylase insig. 26 89
  Pseudomonas sp. RS175 PFR28_04375 Diaminopimelate decarboxylase no data 25 90
  Bacteroides ovatus ATCC 8483 BACOVA_00215 diaminopimelate decarboxylase strong 25 84
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS19560 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) strong 27 80
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS12130 diaminopimelate decarboxylase insig. 28 80
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05654 Diaminopimelate decarboxylase strong 25 92
  Phaeobacter inhibens DSM 17395 PGA1_c13710 diaminopimelate decarboxylase-like protein insig. 23 83
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) no data 25 90
  Lysobacter sp. OAE881 ABIE51_RS15655 bifunctional aspartate kinase/diaminopimelate decarboxylase no data 28 81
  Kangiella aquimarina DSM 16071 B158DRAFT_1161 aspartate kinase (EC 2.7.2.4) insig. 27 80
  Bacteroides thetaiotaomicron VPI-5482 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) strong 26 84
  Pseudomonas orientalis W4I3 QF045_RS01945 diaminopimelate decarboxylase strong 26 96
  Vibrio cholerae E7946 ATCC 55056 CSW01_00635 diaminopimelate decarboxylase insig. 25 82
  Shewanella sp. ANA-3 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) strong 27 81
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS10180 diaminopimelate decarboxylase no data 27 80
  Pseudomonas fluorescens FW300-N2C3 AO356_12740 diaminopimelate decarboxylase no data 25 96
  Pseudomonas fluorescens SBW25 PFLU_RS29265 diaminopimelate decarboxylase cofit 27 92
  Pseudomonas fluorescens SBW25-INTG PFLU_RS29265 diaminopimelate decarboxylase no data 27 92
  Pseudomonas aeruginosa MRSN321 DY961_RS12270 lysA;go_function=diaminopimelate diaminopimelate decarboxylase strong 25 96
  Pseudomonas aeruginosa PUPa3 DQ20_RS49855 lysA;go_function=diaminopimelate diaminopimelate decarboxylase strong 25 96
  Alteromonas macleodii MIT1002 MIT1002_00160 Diaminopimelate decarboxylase strong 26 81
  Pseudomonas simiae WCS417 PS417_27580 diaminopimelate decarboxylase no data 26 92
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS15945 bifunctional aspartate kinase/diaminopimelate decarboxylase strong 26 80
  Pseudomonas aeruginosa PA14 IKLFDK_27065 diaminopimelate decarboxylase strong 25 96
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) no data 24 90
  Methylophilus sp. DMC18 GFF2209 Diaminopimelate decarboxylase no data 27 80
  Pseudomonas fluorescens GW456-L13 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) strong 24 90
  Dechlorosoma suillum PS Dsui_1182 diaminopimelate decarboxylase no data 25 90
  Rhodanobacter denitrificans MT42 LRK55_RS12365 bifunctional aspartate kinase/diaminopimelate decarboxylase cofit 26 80
  Pseudomonas sp. DMC3 GFF367 Diaminopimelate decarboxylase no data 24 90
  Magnetospirillum magneticum AMB-1 AMB_RS22725 diaminopimelate decarboxylase no data 26 80
  Pseudomonas segetis P6 ACVTMO_RS22510 lysA diaminopimelate decarboxylase strong 25 80
  Bacteroides stercoris CC31F HMPREF1181_RS11050 diaminopimelate decarboxylase strong 25 82
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS09650 diaminopimelate decarboxylase strong 27 80
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS06990 diaminopimelate decarboxylase no data 27 81
  Ralstonia solanacearum UW163 UW163_RS06625 diaminopimelate decarboxylase no data 27 81
  Ralstonia solanacearum PSI07 RPSI07_RS10250 diaminopimelate decarboxylase no data 26 82
  Shewanella oneidensis MR-1 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) strong 26 81
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13545 diaminopimelate decarboxylase strong 24 80
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS12625 bifunctional aspartate kinase/diaminopimelate decarboxylase strong 26 80
  Shewanella amazonensis SB2B Sama_3250 diaminopimelate decarboxylase (RefSeq) strong 26 80
  Pseudomonas putida KT2440 PP_5227 diaminopimelate decarboxylase strong 24 89
  Kangiella aquimarina DSM 16071 B158DRAFT_0272 pyridoxal-dependent decarboxylase, exosortase A system-associated no data 26 80
  Xanthobacter sp. DMC5 GFF3837 Diaminopimelate decarboxylase no data 25 84
  Ralstonia sp. UNC404CL21Col ABZR87_RS02640 diaminopimelate decarboxylase strong 26 80
  Sphingobium sp. HT1-2 GFF1511 Diaminopimelate decarboxylase (EC 4.1.1.20) no data 27 82
  Ralstonia solanacearum GMI1000 RS_RS14930 diaminopimelate decarboxylase no data 26 81
  Rhodanobacter sp. FW510-T8 OKGIIK_02120 lysA bifunctional aspartate kinase/diaminopimelate decarboxylase strong 25 80
  Desulfovibrio vulgaris Miyazaki F DvMF_1010 diaminopimelate decarboxylase (RefSeq) insig. 25 80
  Acinetobacter baumannii LAC-4 RR41_RS04435 diaminopimelate decarboxylase sig. 24 83
  Cupriavidus basilensis FW507-4G11 RR42_RS19050 diaminopimelate decarboxylase no data 26 81
  Acinetobacter radioresistens SK82 MPMX26_02232 Diaminopimelate decarboxylase strong 23 83
  Paraburkholderia graminis OAS925 ABIE53_003749 diaminopimelate decarboxylase strong 27 80
  Pseudomonas fluorescens FW300-N2E3 AO353_09035 diaminopimelate decarboxylase no data 25 90
  Bosea sp. OAE506 ABIE41_RS08740 diaminopimelate decarboxylase no data 26 80
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02390 diaminopimelate decarboxylase insig. 25 88
  Rhodopseudomonas palustris CGA009 TX73_024635 diaminopimelate decarboxylase no data 27 88
  Pseudomonas sp. BP01 JOY50_RS22595 lysA diaminopimelate decarboxylase insig. 24 89
  Paraburkholderia sabiae LMG 24235 QEN71_RS28080 diaminopimelate decarboxylase strong 25 87
  Rahnella sp. WP5 EX31_RS02420 type III PLP-dependent enzyme insig. 25 79
  Phocaeicola dorei CL03T12C01 ABI39_RS19950 diaminopimelate decarboxylase strong 24 82
  Caulobacter crescentus NA1000 CCNA_02296 diaminopimelate decarboxylase no data 26 80
  Caulobacter crescentus NA1000 Δfur CCNA_02296 diaminopimelate decarboxylase no data 26 80
  Desulfovibrio vulgaris Miyazaki F DvMF_0353 diaminopimelate decarboxylase (RefSeq) sig. 23 81
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1727.1 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) sig. 25 85
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS06195 diaminopimelate decarboxylase strong 23 82
  Pseudomonas stutzeri RCH2 Psest_3764 diaminopimelate decarboxylase no data 23 96
  Pseudomonas sp. S08-1 OH686_13800 diaminopimelate decarboxylase cofit 25 96
  Shewanella loihica PV-4 Shew_0322 diaminopimelate decarboxylase (RefSeq) strong 23 85
  Burkholderia phytofirmans PsJN BPHYT_RS00645 diaminopimelate decarboxylase insig. 26 78
  Sphingomonas koreensis DSMZ 15582 Ga0059261_4188 pyridoxal-dependent decarboxylase, exosortase A system-associated strong 28 79
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) strong 26 80
  Pseudomonas sp. SVBP6 COO64_RS01255 lysA diaminopimelate decarboxylase insig. 25 89
  Azospirillum sp. SherDot2 MPMX19_05819 Diaminopimelate decarboxylase no data 25 80
  Herbaspirillum seropedicae SmR1 HSERO_RS00950 diaminopimelate decarboxylase no data 23 91
  Castellaniella sp019104865 MT123 ABCV34_RS12685 diaminopimelate decarboxylase no data 26 80
  Rhodospirillum rubrum S1H Rru_A0396 Diaminopimelate decarboxylase (NCBI) no data 24 92
  Burkholderia phytofirmans PsJN BPHYT_RS35090 diaminopimelate decarboxylase insig. 26 63
  Phaeobacter inhibens DSM 17395 PGA1_c03470 diaminopimelate decarboxylase LysA no data 24 88
  Dinoroseobacter shibae DFL-12 Dshi_3059 diaminopimelate decarboxylase (RefSeq) no data 24 84
  Herbaspirillum seropedicae SmR1 HSERO_RS13690 diaminopimelate decarboxylase insig. 23 83
  Desulfovibrio vulgaris Hildenborough JW710 DVU1647 lysA-1 diaminopimelate decarboxylase (TIGR) insig. 21 91
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS17110 diaminopimelate decarboxylase strong 29 53
  Pantoea sp. MT58 IAI47_03860 diaminopimelate decarboxylase strong 29 53
  Burkholderia phytofirmans PsJN BPHYT_RS17930 diaminopimelate decarboxylase insig. 25 80
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05606 diaminopimelate decarboxylase no data 25 80
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1925 Diaminopimelate decarboxylase (EC 4.1.1.20) insig. 22 81
  Pectobacterium carotovorum WPP14 HER17_RS03710 diaminopimelate decarboxylase strong 28 47
  Variovorax sp. SCN45 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) no data 25 83
  Agrobacterium fabrum C58 Atu3601 diaminopimelate decarboxylase no data 25 80
  Variovorax sp. OAS795 ABID97_RS23305 diaminopimelate decarboxylase no data 24 86
  Pectobacterium carotovorum WPP14 HER17_RS01670 Y4yA family PLP-dependent enzyme cofit 25 59
  Serratia liquefaciens MT49 IAI46_20520 diaminopimelate decarboxylase insig. 26 47
  Acidovorax sp. GW101-3H11 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) no data 26 53
  Escherichia coli ECRC98 JDDGAC_23610 lysA diaminopimelate decarboxylase cofit 27 50
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) strong 26 58
  Rahnella sp. WP5 EX31_RS13275 diaminopimelate decarboxylase strong 28 56
  Pseudomonas putida KT2440 PP_2077 diaminopimelate decarboxylase sig. 26 47
  Dickeya dadantii 3937 DDA3937_RS17425 diaminopimelate decarboxylase strong 27 53
  Escherichia coli ECRC99 KEDOAH_08185 lysA diaminopimelate decarboxylase no data 28 49
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_17035 lysA diaminopimelate decarboxylase strong 27 49
  Erwinia tracheiphila SCR3 LU632_RS06040 lysA diaminopimelate decarboxylase strong 27 49
  Escherichia coli ECRC100 OKFHMN_19945 lysA diaminopimelate decarboxylase strong 28 49
  Escherichia coli ECRC101 MCAODC_10470 lysA diaminopimelate decarboxylase strong 28 49
  Escherichia coli ECRC102 NIAGMN_17715 lysA diaminopimelate decarboxylase strong 28 49
  Sinorhizobium meliloti 1021 SMc00723 diaminopimelate DAP decarboxylase no data 23 80
  Dickeya dianthicola ME23 DZA65_RS18550 diaminopimelate decarboxylase strong 26 53
  Dickeya dianthicola 67-19 HGI48_RS17485 diaminopimelate decarboxylase strong 26 47
  Pseudomonas sp. BP01 JOY50_RS22195 lysA diaminopimelate decarboxylase insig. 25 47
  Pseudomonas sp. SVBP6 COO64_RS08705 lysA diaminopimelate decarboxylase insig. 24 80
  Escherichia coli ECRC62 BNILDI_10310 lysA diaminopimelate decarboxylase strong 28 49
  Escherichia coli BL21 ECD_02686 diaminopimelate decarboxylase, PLP-binding strong 28 49
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00891 Diaminopimelate decarboxylase insig. 28 49
  Escherichia coli BW25113 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) strong 28 49
  Mycobacterium tuberculosis H37Rv Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) no data 23 64
  Escherichia fergusonii Becca EFB2_01045 Diaminopimelate decarboxylase insig. 27 49
  Escherichia coli Nissle 1917 ECOLIN_RS15930 diaminopimelate decarboxylase strong 27 49
  Escherichia coli ECOR38 HEPCGN_19565 lysA diaminopimelate decarboxylase strong 27 49