Homologs of DZA65_RS17375 from Dickeya dianthicola ME23

ribosome maturation factor RimM
SEED: 16S rRNA processing protein RimM
KEGG: 16S rRNA processing protein RimM

98 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Dickeya dianthicola ME23 DZA65_RS17375 ribosome maturation factor RimM no data 100 100
o Dickeya dianthicola 67-19 HGI48_RS16280 ribosome maturation factor RimM no data 99 100
o Dickeya dadantii 3937 DDA3937_RS16170 ribosome maturation factor RimM no data 98 100
o Pectobacterium carotovorum WPP14 HER17_RS05120 ribosome maturation factor RimM no data 79 100
o Escherichia coli BL21 ECD_02497 ribosome maturation factor no data 76 100
o Escherichia fergusonii Becca EFB2_01284 Ribosome maturation factor RimM no data 76 100
o Escherichia coli ECOR27 NOLOHH_12855 rimM ribosome maturation factor RimM no data 76 100
o Escherichia coli ECOR38 HEPCGN_20300 rimM ribosome maturation factor RimM no data 76 100
o Escherichia coli ECRC100 OKFHMN_21180 rimM ribosome maturation factor RimM no data 76 100
o Escherichia coli ECRC101 MCAODC_11710 rimM ribosome maturation factor RimM no data 76 100
o Escherichia coli ECRC102 NIAGMN_18950 rimM ribosome maturation factor RimM no data 76 100
o Escherichia coli ECRC62 BNILDI_11660 rimM ribosome maturation factor RimM no data 76 100
o Escherichia coli ECRC98 JDDGAC_24845 rimM ribosome maturation factor RimM no data 76 100
o Escherichia coli ECRC99 KEDOAH_07040 rimM ribosome maturation factor RimM no data 76 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01098 Ribosome maturation factor RimM no data 76 100
o Escherichia coli Nissle 1917 ECOLIN_RS14740 ribosome maturation factor RimM no data 76 100
o Escherichia coli BW25113 b2608 yfjA orf, hypothetical protein (VIMSS) no data 76 100
o Klebsiella michiganensis M5al BWI76_RS21520 ribosome maturation factor RimM no data 78 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4171 16S rRNA processing protein RimM no data 76 100
o Enterobacter sp. TBS_079 MPMX20_03478 Ribosome maturation factor RimM no data 76 98
o Enterobacter asburiae PDN3 EX28DRAFT_2711 16S rRNA processing protein RimM no data 76 98
o Rahnella sp. WP5 EX31_RS07720 ribosome maturation factor RimM no data 75 100
o Pantoea sp. MT58 IAI47_04380 ribosome maturation factor RimM no data 74 100
o Erwinia tracheiphila SCR3 LU632_RS15660 rimM ribosome maturation factor RimM no data 73 100
o Serratia liquefaciens MT49 IAI46_03925 ribosome maturation factor RimM no data 74 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_03000 ribosome maturation factor RimM no data 61 93
o Shewanella amazonensis SB2B Sama_0890 rimM 16S rRNA-processing protein RimM (RefSeq) no data 49 94
o Shewanella loihica PV-4 Shew_1064 rimM 16S rRNA-processing protein (RefSeq) no data 48 93
o Shewanella sp. ANA-3 Shewana3_3016 rimM 16S rRNA-processing protein RimM (RefSeq) no data 45 94
o Shewanella oneidensis MR-1 SO1358 rimM 16S rRNA processing protein RimM (NCBI ptt file) no data 45 94
o Alteromonas macleodii MIT1002 MIT1002_01309 hypothetical protein no data 46 93
o Kangiella aquimarina DSM 16071 B158DRAFT_2262 16S rRNA processing protein RimM no data 40 93
o Marinobacter adhaerens HP15 HP15_759 16S rRNA-processing protein RimM no data 45 92
o Acinetobacter radioresistens SK82 MPMX26_02784 Ribosome maturation factor RimM no data 39 97
o Pseudomonas sp. S08-1 OH686_17730 16S rRNA processing protein RimM no data 38 93
o Pseudomonas fluorescens FW300-N2C3 AO356_06400 16S rRNA processing protein RimM no data 39 97
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3148 16S rRNA processing protein RimM no data 39 97
o Rhodanobacter sp. FW510-T8 OKGIIK_09560 rimM ribosome maturation factor RimM no data 40 93
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02505 ribosome maturation factor RimM no data 39 93
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1717 16S rRNA processing protein RimM no data 38 97
o Pseudomonas sp. RS175 PFR28_00328 Ribosome maturation factor RimM no data 38 97
o Pseudomonas syringae pv. syringae B728a Psyr_1283 16S rRNA processing protein RimM no data 38 97
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1283 16S rRNA processing protein RimM no data 38 97
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_872 16S rRNA processing protein RimM no data 38 97
o Pseudomonas putida KT2440 PP_1463 Ribosome maturation factor RimM no data 37 97
o Pseudomonas fluorescens SBW25 PFLU_RS24575 ribosome maturation factor RimM no data 37 97
o Pseudomonas fluorescens SBW25-INTG PFLU_RS24575 ribosome maturation factor RimM no data 37 97
o Pseudomonas simiae WCS417 PS417_22915 16S rRNA processing protein RimM no data 37 97
o Rhodanobacter denitrificans MT42 LRK55_RS02260 ribosome maturation factor RimM no data 38 93
o Pseudomonas fluorescens FW300-N2E3 AO353_04380 16S rRNA processing protein RimM no data 39 97
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS08820 ribosome maturation factor RimM no data 41 93
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3767.1 16S rRNA processing protein RimM no data 40 93
o Lysobacter sp. OAE881 ABIE51_RS07745 ribosome maturation factor RimM no data 37 93
o Pseudomonas stutzeri RCH2 Psest_3132 16S rRNA processing protein RimM no data 34 97
o Acidovorax sp. GW101-3H11 Ac3H11_1685 16S rRNA processing protein RimM no data 34 95
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5739 16S rRNA processing protein RimM no data 33 95
o Variovorax sp. OAS795 ABID97_RS08745 ribosome maturation factor RimM no data 32 95
o Herbaspirillum seropedicae SmR1 HSERO_RS07580 ribosome maturation factor RimM no data 31 97
o Variovorax sp. SCN45 GFF3950 16S rRNA processing protein RimM no data 34 95
o Dechlorosoma suillum PS Dsui_3514 16S rRNA processing protein RimM no data 34 92
  Paraburkholderia graminis OAS925 ABIE53_003127 16S rRNA processing protein RimM no data 29 100
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04293 16S rRNA processing protein RimM no data 30 95
  Burkholderia phytofirmans PsJN BPHYT_RS14760 ribosome maturation factor RimM no data 29 95
  Cupriavidus basilensis FW507-4G11 RR42_RS04625 16S rRNA processing protein RimM no data 30 94
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS13910 ribosome maturation factor RimM no data 30 95
o Ralstonia solanacearum UW163 UW163_RS15900 ribosome maturation factor RimM no data 30 95
o Ralstonia solanacearum PSI07 RPSI07_RS19560 ribosome maturation factor RimM no data 30 95
  Paraburkholderia sabiae LMG 24235 QEN71_RS04215 ribosome maturation factor RimM no data 31 95
o Ralstonia solanacearum GMI1000 RS_RS04645 ribosome maturation factor RimM no data 29 95
o Ralstonia sp. UNC404CL21Col ABZR87_RS09605 ribosome maturation factor RimM no data 30 95
o Rhodopseudomonas palustris CGA009 TX73_001260 ribosome maturation factor RimM insig. 31 90
o Castellaniella sp019104865 MT123 ABCV34_RS05580 ribosome maturation factor RimM no data 28 93
o Synechococcus elongatus PCC 7942 Synpcc7942_2259 rimM 16S rRNA-processing protein strong 32 93
o Rhizobium sp. OAE497 ABIE40_RS18350 ribosome maturation factor RimM no data 27 91
o Bosea sp. OAE506 ABIE41_RS11745 ribosome maturation factor RimM no data 33 90
  Rhodospirillum rubrum S1H Rru_A1186 16S rRNA processing protein RimM (NCBI) no data 32 90
o Sphingomonas koreensis DSMZ 15582 Ga0059261_4160 16S rRNA processing protein RimM no data 27 81
o Phaeobacter inhibens DSM 17395 PGA1_c00540 putative 16S rRNA-processing protein RimM no data 29 90
o Dinoroseobacter shibae DFL-12 Dshi_0344 16S rRNA processing protein RimM (RefSeq) no data 29 93
o Sinorhizobium meliloti 1021 SMc03860 16S rRNA-processing protein RimM no data 27 91
o Agrobacterium fabrum C58 Atu2700 16S rRNA processing protein no data 29 89
  Azospirillum brasilense Sp245 AZOBR_RS03520 16S rRNA-processing protein RimM no data 29 90
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_20585 16S rRNA processing protein RimM no data 27 91
  Caulobacter crescentus NA1000 CCNA_03766 16S rRNA processing protein RimM no data 26 77
  Caulobacter crescentus NA1000 Δfur CCNA_03766 16S rRNA processing protein RimM cofit 26 77
  Desulfovibrio vulgaris Miyazaki F DvMF_2885 16S rRNA processing protein RimM (RefSeq) insig. 27 93
o Magnetospirillum magneticum AMB-1 AMB_RS20545 ribosome maturation factor RimM no data 30 81
o Azospirillum sp. SherDot2 MPMX19_00324 Ribosome maturation factor RimM no data 25 95
o Mycobacterium tuberculosis H37Rv Rv2907c Probable 16S rRNA processing protein RimM no data 28 93
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14860 ribosome maturation factor RimM no data 28 74
  Desulfovibrio vulgaris Hildenborough JW710 DVU0837 rimM 16S rRNA processing protein RimM (TIGR) no data 26 93
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1339 16S rRNA processing protein RimM no data 23 90
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS15255 ribosome maturation factor RimM strong 28 71
  Bacteroides ovatus ATCC 8483 BACOVA_01433 16S rRNA processing protein RimM no data 25 82
  Bacteroides thetaiotaomicron VPI-5482 BT2004 RimM protein, required for 16S rRNA processing (NCBI ptt file) no data 25 91
  Bifidobacterium breve UCC2003 BBR_RS12290 ribosome maturation factor RimM no data 29 62
  Bacteroides stercoris CC31F HMPREF1181_RS07890 16S rRNA processing protein RimM no data 25 91
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20955 16S rRNA processing protein RimM no data 25 91