Conservation of cofitness between RR42_RS05910 and RR42_RS03080 in Cupriavidus basilensis FW507-4G11

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS05910 DNA repair protein 1.0 RR42_RS03080 recombinase RecA 0.62 6
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS05415 DNA repair protein RecN 0.79 RALBFv3_RS12010 recombinase RecA 0.54 11
Ralstonia solanacearum UW163 0.63 UW163_RS08210 DNA repair protein RecN 0.79 UW163_RS01625 recombinase RecA — —
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS01065 DNA repair protein RecN 0.80 ABZR87_RS07965 recombinase RecA 0.25 49
Ralstonia solanacearum PSI07 0.63 RPSI07_RS11890 DNA repair protein RecN 0.79 RPSI07_RS21260 recombinase RecA low > 81
Ralstonia solanacearum GMI1000 0.62 RS_RS13275 DNA repair protein RecN 0.79 RS_RS02760 DNA recombination/repair protein RecA — —
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS03060 DNA repair protein 0.75 HSERO_RS03270 protein RecA low > 78
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS26535 DNA repair protein RecN 0.84 QEN71_RS02335 recombinase RecA — —
Paraburkholderia graminis OAS925 0.54 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.85 ABIE53_003448 recombination protein RecA 0.39 4
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_04692 DNA replication and repair protein RecN 0.85 H281DRAFT_04208 RecA protein 0.34 63
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS03560 DNA repair protein 0.84 BPHYT_RS16360 recombinase RecA — —
Dechlorosoma suillum PS 0.46 Dsui_3072 DNA repair protein RecN 0.76 Dsui_0707 protein RecA 0.85 7
Castellaniella sp019104865 MT123 0.44 ABCV34_RS07470 DNA repair protein RecN 0.80 ABCV34_RS04460 recombinase RecA low > 48
Acidovorax sp. GW101-3H11 0.42 Ac3H11_3460 DNA repair protein RecN 0.76 Ac3H11_1255 RecA protein — —
Variovorax sp. SCN45 0.41 GFF2357 DNA repair protein RecN 0.76 GFF5390 RecA protein low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF829 DNA repair protein RecN 0.73 GFF2500 RecA protein low > 90
Rahnella sp. WP5 0.38 EX31_RS21760 DNA repair protein RecN 0.68 EX31_RS07800 recombinase RecA low > 89
Pseudomonas sp. S08-1 0.37 OH686_17050 DNA repair protein RecN 0.71 OH686_18205 protein RecA low > 80
Pantoea sp. MT58 0.37 IAI47_04810 DNA repair protein RecN 0.68 IAI47_04300 recombinase RecA low > 76
Escherichia coli Nissle 1917 0.37 ECOLIN_RS14775 DNA repair protein RecN 0.68 ECOLIN_RS15060 recombinase RecA — —
Escherichia coli BL21 0.37 ECD_02504 recombination and repair protein 0.68 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor low > 61
Enterobacter sp. TBS_079 0.37 MPMX20_03486 DNA repair protein RecN 0.68 MPMX20_03580 Protein RecA low > 85
Escherichia coli ECRC62 0.37 BNILDI_11620 recN DNA repair protein RecN 0.68 BNILDI_11105 recA recombinase RecA low > 75
Marinobacter adhaerens HP15 0.37 HP15_3084 DNA repair protein RecN 0.69 HP15_1048 recombinase A low > 73
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_01091 DNA repair protein RecN 0.68 OHPLBJKB_01035 Protein RecA low > 73
Escherichia coli ECOR27 0.37 NOLOHH_12815 recN DNA repair protein RecN 0.68 NOLOHH_12545 recA recombinase RecA low > 75
Escherichia coli BW25113 0.37 b2616 recN recombination and repair protein (NCBI) 0.68 b2699 recA recombinase A (NCBI) low > 76
Escherichia coli ECOR38 0.37 HEPCGN_20265 recN DNA repair protein RecN 0.68 HEPCGN_19900 recA recombinase RecA low > 87
Dickeya dadantii 3937 0.37 DDA3937_RS04325 DNA repair protein RecN 0.68 DDA3937_RS16245 recombinase RecA low > 74
Escherichia coli ECRC101 0.36 MCAODC_11670 recN DNA repair protein RecN 0.68 MCAODC_11230 recA recombinase RecA low > 87
Escherichia coli ECRC99 0.36 KEDOAH_07075 recN DNA repair protein RecN 0.68 KEDOAH_07430 recA recombinase RecA — —
Escherichia coli ECRC102 0.36 NIAGMN_18915 recN DNA repair protein RecN 0.68 NIAGMN_18475 recA recombinase RecA — —
Escherichia fergusonii Becca 0.36 EFB2_01277 DNA repair protein RecN 0.68 EFB2_01225 Protein RecA low > 86
Escherichia coli ECRC100 0.36 OKFHMN_21145 recN DNA repair protein RecN 0.68 OKFHMN_20705 recA recombinase RecA — —
Escherichia coli ECRC98 0.36 JDDGAC_24810 recN DNA repair protein RecN 0.68 JDDGAC_24370 recA recombinase RecA — —
Serratia liquefaciens MT49 0.36 IAI46_19635 DNA repair protein RecN 0.67 IAI46_03840 recombinase RecA 0.59 2
Enterobacter asburiae PDN3 0.36 EX28DRAFT_2719 DNA repair protein RecN 0.68 EX28DRAFT_2785 protein RecA — —
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0601 DNA replication and repair protein RecN 0.69 B158DRAFT_1531 protein RecA 0.81 5
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_5106 DNA repair protein RecN 0.70 PfGW456L13_4668 RecA protein 0.29 65
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_1178 DNA repair protein RecN 0.69 Pf1N1B4_3143 RecA protein 0.23 66
Klebsiella michiganensis M5al 0.36 BWI76_RS21560 DNA repair protein RecN 0.68 BWI76_RS22180 recombinase RecA — —
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_3370 DNA repair protein RecN 0.69 Pf6N2E2_2993 RecA protein — —
Shewanella amazonensis SB2B 0.36 Sama_1026 recombination and repair protein (RefSeq) 0.68 Sama_1046 recA recombinase A (RefSeq) 0.48 19
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF4162 DNA repair protein RecN 0.69 GFF4693 RecA protein — —
Pseudomonas sp. RS175 0.36 PFR28_00071 DNA repair protein RecN 0.69 PFR28_00472 Protein RecA low > 88
Dickeya dianthicola 67-19 0.36 HGI48_RS04320 DNA repair protein RecN 0.68 HGI48_RS16355 recombinase RecA low > 71
Dickeya dianthicola ME23 0.35 DZA65_RS04235 DNA repair protein RecN 0.68 DZA65_RS17450 recombinase RecA — —
Pectobacterium carotovorum WPP14 0.35 HER17_RS17420 DNA repair protein RecN 0.69 HER17_RS05045 recombinase RecA 0.73 1
Erwinia tracheiphila SCR3 0.35 LU632_RS16985 recN DNA repair protein RecN 0.68 LU632_RS15735 recA recombinase RecA 0.51 14
Pseudomonas stutzeri RCH2 0.35 Psest_0962 DNA repair protein RecN 0.72 Psest_2872 protein RecA 0.39 13
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_07510 DNA repair protein RecN 0.69 AO356_05670 recombinase RecA 0.33 37
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS25910 DNA repair protein RecN 0.71 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS25910 DNA repair protein RecN 0.71 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas simiae WCS417 0.34 PS417_24070 recombination and repair protein 0.71 PS417_05815 recombinase RecA 0.42 10
Shewanella oneidensis MR-1 0.34 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.69 SO3430 recA recA protein (NCBI ptt file) 0.67 1
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_05660 DNA repair protein RecN 0.70 AO353_16805 recombinase RecA 0.37 30
Shewanella sp. ANA-3 0.34 Shewana3_1104 recombination and repair protein (RefSeq) 0.69 Shewana3_1126 recA recombinase A (RefSeq) 0.61 61
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_4197 DNA replication and repair protein RecN 0.70 Psyr_1378 RecA protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_4197 DNA replication and repair protein RecN 0.70 Psyr_1378 RecA protein 0.49 11
Pseudomonas putida KT2440 0.33 PP_4729 factor used in recombination and DNA repair 0.71 PP_1629 Protein RecA 0.12 92
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_04395 DNA repair protein RecN 0.69 CSW01_02875 DNA recombination/repair protein RecA 0.62 1
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS05665 DNA repair protein RecN 0.69 ABZR86_RS00660 recombinase RecA 0.87 3
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_07340 recN DNA repair protein RecN 0.71 OKGIIK_03740 recA recombinase RecA low > 52
Shewanella loihica PV-4 0.32 Shew_1196 recombination and repair protein (RefSeq) 0.67 Shew_1215 recA recombinase A (RefSeq) low > 60
Rhodanobacter denitrificans MT42 0.32 LRK55_RS17815 DNA repair protein RecN 0.71 LRK55_RS14695 recombinase RecA low > 63
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS17960 DNA repair protein RecN 0.71 LRK54_RS14980 recombinase RecA 0.61 1
Acinetobacter radioresistens SK82 0.32 MPMX26_00239 DNA repair protein RecN 0.70 MPMX26_01308 Protein RecA 0.32 21
Lysobacter sp. OAE881 0.32 ABIE51_RS11655 DNA repair protein RecN 0.71 ABIE51_RS07800 recombinase RecA low > 62
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.3431.1 DNA repair protein RecN 0.70 Xcc-8004.3111.1 RecA protein — —
Alteromonas macleodii MIT1002 0.31 MIT1002_01443 Recombination protein N 0.69 MIT1002_00955 Recombinase A low > 70
Sinorhizobium meliloti 1021 0.29 SMc01877 DNA repair protein 0.71 SMc00760 recombinase A 0.67 5
Magnetospirillum magneticum AMB-1 0.29 AMB_RS19520 DNA repair protein RecN 0.68 AMB_RS03205 DNA recombination/repair protein RecA — —
Bosea sp. OAE506 0.28 ABIE41_RS12645 DNA repair protein RecN 0.66 ABIE41_RS13335 recombinase RecA 0.77 4
Agrobacterium fabrum C58 0.28 Atu2083 DNA repair protein RecN 0.70 Atu1874 RecA protein 0.58 3
Azospirillum sp. SherDot2 0.27 MPMX19_01601 DNA repair protein RecN 0.70 MPMX19_00869 Protein RecA — —
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_1026 DNA repair protein RecN 0.67 Ga0059261_0204 protein RecA 0.60 2
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS14500 DNA repair protein RecN 0.60 ABI39_RS11930 recombinase RecA low > 72
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS18225 DNA repair protein RecN 0.60 HMPREF1058_RS15965 recombinase RecA 0.72 5
Azospirillum brasilense Sp245 0.26 AZOBR_RS12395 DNA repair protein RecN 0.70 AZOBR_RS11095 recombinase RecA — —
Fusobacterium nucleatum SB010 0.25 HUW76_08055 DNA repair protein RecN 0.53 HUW76_07355 recombinase RecA low > 35
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS02000 DNA repair protein RecN 0.60 HMPREF1078_RS00095 recombinase RecA low > 61
Rhodospirillum rubrum S1H 0.25 Rru_A0940 DNA repair protein RecN (NCBI) 0.70 Rru_A2819 RecA DNA recombination protein (NCBI) — —
Bacteroides thetaiotaomicron VPI-5482 0.24 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.59 BT4610 RecA (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS10900 DNA repair protein RecN 0.59 HMPREF1181_RS11910 recombinase RecA low > 56
Rhodopseudomonas palustris CGA009 0.24 TX73_018240 DNA repair protein RecN 0.70 TX73_019940 recombinase RecA — —
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_02062 DNA repair protein recN 0.66 CCNA_01141 RecA protein — —
Caulobacter crescentus NA1000 0.23 CCNA_02062 DNA repair protein recN 0.66 CCNA_01141 RecA protein 0.85 3
Mucilaginibacter yixingensis YX-36 DSM 26809 0.23 ABZR88_RS06580 DNA repair protein RecN 0.61 ABZR88_RS16740 recombinase RecA 0.47 3
Bacteroides ovatus ATCC 8483 0.23 BACOVA_00200 DNA repair protein RecN 0.59 BACOVA_05402 RecA protein 0.41 84
Phaeobacter inhibens DSM 17395 0.23 PGA1_c09720 DNA repair protein RecN 0.70 PGA1_c15260 protein recA (recombinase A) 0.59 1
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_2067 DNA repair protein RecN 0.59 Echvi_0044 protein RecA 0.64 16
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_1779 recN DNA repair protein RecN 0.58 Synpcc7942_0348 recA recombinase A — —
Dinoroseobacter shibae DFL-12 0.22 Dshi_2413 DNA repair protein RecN (RefSeq) 0.65 Dshi_1643 recA protein (RefSeq) 0.45 9
Pedobacter sp. GW460-11-11-14-LB5 0.21 CA265_RS14855 DNA repair protein RecN 0.59 CA265_RS00600 recombinase RecA 0.63 13
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS02620 DNA repair protein RecN 0.69 A4249_RS12615 recombinase RecA low > 48
Pontibacter actiniarum KMM 6156, DSM 19842 0.20 CA264_13235 DNA repair protein RecN 0.63 CA264_19695 DNA recombination/repair protein RecA — —
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU2463 recN DNA repair protein RecN (TIGR) 0.61 DVU1090 recA recA protein (TIGR) 0.30 52
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_0923 SMC domain protein (RefSeq) 0.60 DvMF_0876 recA recombinase A (RefSeq) 0.63 3
Bifidobacterium breve UCC2003 0.15 BBR_RS14030 DNA repair protein RecN 0.63 BBR_RS16530 recombinase RecA 0.66 4

Not shown: 1 genomes with orthologs for RR42_RS05910 only; 2 genomes with orthologs for RR42_RS03080 only