Conservation of cofitness between Pf6N2E2_2645 and Pf6N2E2_2325 in Pseudomonas fluorescens FW300-N2E2

108 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E2 1.0 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 1.0 Pf6N2E2_2325 Recombination protein RecR 0.35 8
Pseudomonas fluorescens FW300-N2C3 0.99 AO356_04050 ATP-dependent DNA helicase RecQ 0.97 AO356_02495 recombination protein RecR 0.21 58
Pseudomonas sp. RS175 0.98 PFR28_00788 ATP-dependent DNA helicase RecQ 0.95 PFR28_01077 Recombination protein RecR low > 88
Pseudomonas fluorescens FW300-N1B4 0.96 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.94 Pf1N1B4_3864 Recombination protein RecR low > 87
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_18430 ATP-dependent DNA helicase RecQ 0.95 AO353_00675 recombination protein RecR 0.34 26
Pseudomonas fluorescens GW456-L13 0.95 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.94 PfGW456L13_4074 Recombination protein RecR 0.29 34
Pseudomonas sp. DMC3 0.95 GFF2380 ATP-dependent DNA helicase RecQ 0.95 GFF708 Recombination protein RecR low > 89
Pseudomonas simiae WCS417 0.95 PS417_19950 ATP-dependent DNA helicase RecQ 0.93 PS417_20800 recombination protein RecR 0.25 5
Pseudomonas fluorescens SBW25 0.94 PFLU_RS21920 DNA helicase RecQ 0.93 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas fluorescens SBW25-INTG 0.94 PFLU_RS21920 DNA helicase RecQ 0.93 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas lactucae CFBP13502 0.94 GEMAOFIL_04187 ATP-dependent DNA helicase RecQ 0.93 GEMAOFIL_04304 Recombination protein RecR low > 93
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_3738 ATP-dependent DNA helicase RecQ 0.89 Psyr_3396 DNA replication and repair protein RecR 0.37 7
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_3738 ATP-dependent DNA helicase RecQ 0.89 Psyr_3396 DNA replication and repair protein RecR 0.49 7
Pseudomonas sp. SVBP6 0.88 COO64_RS21845 recQ DNA helicase RecQ 0.90 COO64_RS18630 recR recombination mediator RecR low > 93
Pseudomonas stutzeri RCH2 0.86 Psest_1869 ATP-dependent DNA helicase RecQ 0.84 Psest_2545 recombination protein RecR 0.61 4
Pseudomonas sp. BP01 0.86 JOY50_RS01155 recQ DNA helicase RecQ 0.88 JOY50_RS00135 recR recombination mediator RecR low > 84
Pseudomonas putida KT2440 0.85 PP_4516 ATP-dependent DNA 3 0.89 PP_4267 Recombination protein RecR low > 96
Pseudomonas segetis P6 0.85 MPMX49_02936 ATP-dependent DNA helicase RecQ 0.86 MPMX49_02230 Recombination protein RecR low > 75
Pseudomonas sp. S08-1 0.84 OH686_20670 ATP-dependent DNA helicase RecQ 0.83 OH686_02385 recombination protein RecR low > 80
Pseudomonas aeruginosa PA14 0.81 IKLFDK_17145 DNA helicase RecQ 0.82 IKLFDK_07325 recombination mediator RecR low > 100
Marinobacter adhaerens HP15 0.52 HP15_1718 ATP-dependent DNA helicase RecQ 0.60 HP15_1883 recombination protein RecR — —
Methylophilus sp. DMC18 0.51 GFF2139 ATP-dependent DNA helicase RecQ 0.48 GFF1237 Recombination protein RecR low > 43
Rhodanobacter sp000427505 FW510-R12 0.50 LRK53_RS15600 DNA helicase RecQ 0.57 LRK53_RS08825 recombination mediator RecR low > 59
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS13000 DNA helicase RecQ 0.56 LRK54_RS01250 recombination mediator RecR low > 59
Rhodanobacter denitrificans MT42 0.50 LRK55_RS12700 DNA helicase RecQ 0.56 LRK55_RS01020 recombination mediator RecR low > 63
Azospirillum sp. SherDot2 0.50 MPMX19_00123 ATP-dependent DNA helicase RecQ 0.37 MPMX19_02195 Recombination protein RecR 0.45 40
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_02375 recQ DNA helicase RecQ 0.56 OKGIIK_05655 recR recombination mediator RecR low > 53
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS19925 DNA helicase RecQ 0.55 ABZR86_RS06235 recombination mediator RecR 0.51 3
Azospirillum brasilense Sp245 0.49 AZOBR_RS02840 ATP-dependent DNA helicase RecQ 0.38 AZOBR_RS03880 recombinase RecR 0.71 6
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS19310 ATP-dependent DNA helicase RecQ 0.50 RR42_RS13270 recombination protein RecR 0.42 26
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.51 Xcc-8004.4012.1 Recombination protein RecR low > 74
Paraburkholderia sabiae LMG 24235 0.48 QEN71_RS28295 DNA helicase RecQ 0.47 QEN71_RS22285 recombination mediator RecR low > 153
Magnetospirillum magneticum AMB-1 0.48 AMB_RS21505 DNA helicase RecQ 0.37 AMB_RS20755 recombination protein RecR low > 64
Xanthobacter sp. DMC5 0.47 GFF753 ATP-dependent DNA helicase RecQ 0.35 GFF3747 Recombination protein RecR — —
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS18145 ATP-dependent DNA helicase RecQ 0.47 BPHYT_RS09070 recombination protein RecR low > 109
Paraburkholderia graminis OAS925 0.47 ABIE53_003792 ATP-dependent DNA helicase RecQ 0.47 ABIE53_002048 recombination protein RecR low > 113
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_06595 ATP-dependent DNA helicase RecQ 0.47 H281DRAFT_00834 DNA replication and repair protein RecR — —
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS02465 ATP-dependent DNA helicase RecQ 0.49 HSERO_RS18355 recombinase RecR 0.63 2
Ralstonia solanacearum PSI07 0.47 RPSI07_RS10025 DNA helicase RecQ 0.48 RPSI07_RS18205 recombination protein RecR low > 81
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS07220 DNA helicase RecQ 0.48 RALBFv3_RS15170 recombination protein RecR low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS06400 DNA helicase RecQ 0.48 UW163_RS12640 recombination protein RecR — —
Ralstonia solanacearum GMI1000 0.46 RS_RS15155 DNA helicase RecQ 0.48 RS_RS05980 recombination protein RecR low > 80
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS02880 DNA helicase RecQ 0.51 ABZR87_RS10810 recombination mediator RecR low > 80
Rhizobium sp. OAE497 0.46 ABIE40_RS12745 DNA helicase RecQ 0.33 ABIE40_RS00300 recombination mediator RecR low > 107
Lysobacter sp. OAE881 0.46 ABIE51_RS05145 DNA helicase RecQ 0.57 ABIE51_RS14010 recombination mediator RecR low > 62
Rhodopseudomonas palustris CGA009 0.46 TX73_025080 DNA helicase RecQ 0.37 TX73_003195 recombination mediator RecR — —
Dechlorosoma suillum PS 0.46 Dsui_3092 ATP-dependent DNA helicase RecQ 0.51 Dsui_1811 recombination protein RecR low > 51
Sinorhizobium meliloti 1021 0.44 SMc01566 ATP-dependent DNA helicase 0.35 SMc02908 recombination protein RecR low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF1958 ATP-dependent DNA helicase RecQ 0.47 GFF4253 Recombination protein RecR 0.43 66
Variovorax sp. OAS795 0.44 ABID97_RS03395 DNA helicase RecQ 0.48 ABID97_RS14700 recombination mediator RecR low > 91
Castellaniella sp019104865 MT123 0.44 ABCV34_RS07985 DNA helicase RecQ 0.45 ABCV34_RS15480 recombination mediator RecR low > 48
Agrobacterium fabrum C58 0.43 Atu0061 ATP-dependent DNA helicase 0.37 Atu0093 Recombination protein low > 89
Acidovorax sp. GW101-3H11 0.42 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.42 Ac3H11_473 Recombination protein RecR 0.55 20
Pantoea sp. MT58 0.40 IAI47_18360 ATP-dependent DNA helicase RecQ 0.61 IAI47_14465 recombination protein RecR low > 76
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_01045 DNA helicase RecQ 0.57 CSW01_05375 recombination protein RecR 0.53 46
Enterobacter asburiae PDN3 0.40 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.62 EX28DRAFT_2485 DNA replication and repair protein RecR low > 76
Phaeobacter inhibens DSM 17395 0.40 PGA1_c31900 ATP-dependent DNA helicase RecQ 0.33 PGA1_c30290 recombination protein RecR low > 62
Enterobacter sp. TBS_079 0.40 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.62 MPMX20_01074 Recombination protein RecR low > 85
Escherichia coli ECOR38 0.40 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 0.61 HEPCGN_06770 recR recombination mediator RecR 0.61 7
Escherichia coli ECRC62 0.40 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 0.61 BNILDI_22505 recR recombination mediator RecR low > 75
Escherichia fergusonii Becca 0.40 EFB2_04815 ATP-dependent DNA helicase RecQ 0.61 EFB2_03586 Recombination protein RecR low > 86
Escherichia coli ECRC99 0.40 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 0.61 KEDOAH_19810 recR recombination mediator RecR — —
Escherichia coli ECRC101 0.40 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 0.61 MCAODC_27380 recR recombination mediator RecR low > 88
Escherichia coli ECOR27 0.40 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 0.61 NOLOHH_01085 recR recombination mediator RecR low > 76
Escherichia coli BW25113 0.40 b3822 recQ ATP-dependent DNA helicase (NCBI) 0.61 b0472 recR recombination protein RecR (NCBI) 0.39 3
Escherichia coli Nissle 1917 0.40 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 0.61 ECOLIN_RS02805 recombination mediator RecR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 0.61 OHPLBJKB_03202 Recombination protein RecR 0.50 50
Escherichia coli ECRC100 0.40 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 0.61 OKFHMN_08155 recR recombination mediator RecR low > 79
Escherichia coli ECRC102 0.40 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 0.61 NIAGMN_06210 recR recombination mediator RecR 0.72 5
Escherichia coli ECRC98 0.40 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 0.61 JDDGAC_11805 recR recombination mediator RecR low > 87
Pantoea agglomerans CFBP13505 P0401 0.40 PagCFBP13505_RS15340 ATP-dependent DNA helicase RecQ 0.61 PagCFBP13505_RS10730 recombination protein RecR low > 74
Escherichia coli BL21 0.40 ECD_03701 ATP-dependent DNA helicase 0.61 ECD_00423 gap repair protein 0.73 9
Klebsiella pneumoniae MKP103 0.39 KDGMDA_09735 ATP-dependent DNA helicase RecQ 0.62 KDGMDA_14890 recombination mediator RecR low > 95
Dickeya dianthicola 67-19 0.39 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.60 HGI48_RS05840 recombination protein RecR — —
Shewanella sp. ANA-3 0.39 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.57 Shewana3_2444 recR recombination protein RecR (RefSeq) 0.76 6
Dickeya dianthicola ME23 0.39 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.60 DZA65_RS06165 recombination protein RecR low > 75
Dickeya dadantii 3937 0.39 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.61 DDA3937_RS05790 recombination protein RecR low > 74
Serratia liquefaciens MT49 0.39 IAI46_00770 ATP-dependent DNA helicase RecQ 0.62 IAI46_05240 recombination protein RecR 0.73 6
Rahnella sp. WP5 0.39 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.61 EX31_RS22525 recombination protein RecR low > 89
Klebsiella michiganensis M5al 0.39 BWI76_RS01245 DNA helicase RecQ 0.61 BWI76_RS06830 recombination protein RecR 0.23 20
Shewanella oneidensis MR-1 0.39 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.57 SO2015 recR recombination protein RecR (NCBI ptt file) 0.68 3
Pectobacterium carotovorum WPP14 0.39 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.61 HER17_RS15695 recombination mediator RecR low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF248 ATP-dependent DNA helicase RecQ 0.61 GFF4390 Recombination protein RecR 0.64 5
Alteromonas macleodii MIT1002 0.39 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.60 MIT1002_02649 Recombination protein RecR low > 70
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS20865 DNA helicase RecQ 0.36 ABZR88_RS10695 recombination mediator RecR low > 71
Erwinia amylovora T8 0.39 OLJFJH_06445 ATP-dependent DNA helicase RecQ 0.61 OLJFJH_17805 recombination mediator RecR low > 58
Shewanella loihica PV-4 0.38 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.58 Shew_2233 recombination protein RecR (RefSeq) 0.53 25
Rhodospirillum rubrum S1H 0.38 Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) 0.38 Rru_A3471 RecR protein (NCBI) — —
Dinoroseobacter shibae DFL-12 0.38 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) 0.34 Dshi_0648 recombination protein RecR (RefSeq) 0.42 16
Erwinia tracheiphila HP pepo 2.2 0.38 IJEDHG_08740 recQ ATP-dependent DNA helicase RecQ 0.61 IJEDHG_16645 recR recombination mediator RecR low > 61
Erwinia tracheiphila SCR3 0.38 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.61 LU632_RS18105 recR recombination mediator RecR 0.43 34
Shewanella amazonensis SB2B 0.38 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.56 Sama_1312 recR recombination protein RecR (RefSeq) 0.72 5
Echinicola vietnamensis KMM 6221, DSM 17526 0.37 Echvi_0784 ATP-dependent DNA helicase RecQ 0.38 Echvi_1987 recombination protein RecR low > 79
Bosea sp. OAE506 0.36 ABIE41_RS04160 DNA helicase RecQ 0.34 ABIE41_RS04035 recombination mediator RecR — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.36 CA264_07560 DNA helicase RecQ 0.36 CA264_01105 recombination protein RecR 0.53 18
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_2261 ATP-dependent DNA helicase RecQ 0.38 Ga0059261_0645 DNA replication and repair protein RecR low > 68
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS14585 DNA helicase RecQ 0.33 HMPREF1058_RS18560 recombination protein RecR low > 67
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS10235 DNA helicase RecQ 0.33 ABI39_RS14870 recombination protein RecR low > 72
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS14110 DNA helicase RecQ 0.35 HMPREF1181_RS16455 recombination protein RecR low > 56
Sphingobium sp. HT1-2 0.33 GFF798 ATP-dependent DNA helicase RecQ 0.37 GFF2663 Recombination protein RecR low > 95
Brevundimonas sp. GW460-12-10-14-LB2 0.33 A4249_RS14575 DNA helicase RecQ 0.32 A4249_RS15115 recombination mediator RecR low > 48
Bacteroides thetaiotaomicron VPI-5482 0.33 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) 0.35 BT1081 recombination protein recR (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS01195 DNA helicase RecQ 0.35 HMPREF1078_RS07615 recombination mediator RecR low > 61
Cellulophaga baltica 18 0.32 M666_RS16920 DNA helicase RecQ 0.34 M666_RS09385 recombination mediator RecR low > 67
Pedobacter sp. GW460-11-11-14-LB5 0.32 CA265_RS08905 DNA helicase RecQ 0.35 CA265_RS04980 recombination protein RecR low > 88
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_03578 ATP-dependent DNA helicase recQ 0.37 CCNA_00270 Recombination protein recR low > 67
Caulobacter crescentus NA1000 0.31 CCNA_03578 ATP-dependent DNA helicase recQ 0.37 CCNA_00270 Recombination protein recR 0.69 11
Fusobacterium nucleatum SB010 0.29 HUW76_07235 DNA helicase RecQ 0.38 HUW76_08785 recombination protein RecR low > 35
Bifidobacterium breve UCC2003 0.27 BBR_RS13150 DNA helicase RecQ 0.38 BBR_RS10990 recombination protein RecR low > 34

Not shown: 1 genomes with orthologs for Pf6N2E2_2645 only; 9 genomes with orthologs for Pf6N2E2_2325 only