Conservation of cofitness between PP_4724 and PP_5095 in Pseudomonas putida KT2440

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4724 Carbamoyl-phosphate synthase small chain 1.0 PP_5095 pyrroline-5-carboxylate reductase 0.55 10
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_05635 carbamoyl phosphate synthase small subunit 0.85 AO353_08165 pyrroline-5-carboxylate reductase
Pseudomonas simiae WCS417 0.93 PS417_24045 carbamoyl phosphate synthase small subunit 0.82 PS417_26730 pyrroline-5-carboxylate reductase
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_1173 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.84 Pf1N1B4_2341 Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_07485 carbamoyl phosphate synthase small subunit 0.85 AO356_13420 pyrroline-5-carboxylate reductase
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_3365 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.84 Pf6N2E2_4600 Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
Pseudomonas sp. RS175 0.92 PFR28_00076 Carbamoyl-phosphate synthase small chain 0.86 PFR28_04243 Pyrroline-5-carboxylate reductase
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_5100 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.84 PfGW456L13_1010 Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.82 PFLU_RS28375 pyrroline-5-carboxylate reductase
Pseudomonas fluorescens SBW25 0.92 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.82 PFLU_RS28375 pyrroline-5-carboxylate reductase
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.75 Psyr_0476 pyrroline-5-carboxylate reductase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.75 Psyr_0476 pyrroline-5-carboxylate reductase
Pseudomonas sp. S08-1 0.88 OH686_17075 Carbamoyl-phosphate synthase small chain 0.79 OH686_10980 pyrroline-5-carboxylate reductase
Pseudomonas stutzeri RCH2 0.87 Psest_0967 carbamoyl-phosphate synthase, small subunit 0.77 Psest_0283 pyrroline-5-carboxylate reductase
Marinobacter adhaerens HP15 0.75 HP15_3078 carbamoyl-phosphate synthase small chain 0.42 HP15_287 pyrroline-5-carboxylate reductase 0.41 11
Vibrio cholerae E7946 ATCC 55056 0.75 CSW01_12105 carbamoyl-phosphate synthase small subunit 0.38 CSW01_02450 pyrroline-5-carboxylate reductase low > 62
Shewanella amazonensis SB2B 0.74 Sama_2504 carbamoyl phosphate synthase small subunit (RefSeq) 0.37 Sama_2478 pyrroline-5-carboxylate reductase (RefSeq) 0.74 60
Rahnella sp. WP5 0.72 EX31_RS03835 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.38 EX31_RS02690 pyrroline-5-carboxylate reductase 0.96 22
Shewanella oneidensis MR-1 0.72 SO1141 carA carbamoyl-phosphate synthase, small subunit (NCBI ptt file) 0.38 SO3354 proC pyrroline-5-carboxylate reductase (NCBI ptt file) 0.87 50
Pectobacterium carotovorum WPP14 0.72 HER17_RS02895 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.36 HER17_RS03805 pyrroline-5-carboxylate reductase
Klebsiella michiganensis M5al 0.72 BWI76_RS04465 carbamoyl-phosphate synthase small subunit 0.27 BWI76_RS06170 pyrroline-5-carboxylate reductase
Enterobacter asburiae PDN3 0.72 EX28DRAFT_3637 carbamoyl-phosphate synthase, small subunit 0.27 EX28DRAFT_2585 pyrroline-5-carboxylate reductase
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF214 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.27 GFF4283 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) low > 78
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_0615 carbamoyl-phosphate synthase, small subunit 0.39 B158DRAFT_0197 pyrroline-5-carboxylate reductase
Escherichia coli BW25113 0.71 b0032 carA carbamoyl-phosphate synthase small subunit (NCBI) 0.27 b0386 proC pyrroline-5-carboxylate reductase (NCBI) 0.78 72
Escherichia coli Nissle 1917 0.71 ECOLIN_RS00175 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.28 ECOLIN_RS02345 pyrroline-5-carboxylate reductase low > 52
Escherichia coli BL21 0.71 ECD_00036 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase 0.27 ECD_00333 pyrroline-5-carboxylate reductase, NAD(P)-binding low > 60
Escherichia fergusonii Becca 0.71 EFB2_04013 Carbamoyl-phosphate synthase small chain 0.28 EFB2_03670 Pyrroline-5-carboxylate reductase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_03625 Carbamoyl-phosphate synthase small chain 0.27 OHPLBJKB_03288 Pyrroline-5-carboxylate reductase low > 73
Enterobacter sp. TBS_079 0.71 MPMX20_00739 Carbamoyl-phosphate synthase small chain 0.27 MPMX20_00976 Pyrroline-5-carboxylate reductase 0.84 35
Escherichia coli ECRC98 0.71 JDDGAC_14540 carA carbamoyl phosphate synthase small subunit 0.27 JDDGAC_12265 proC pyrroline-5-carboxylate reductase
Escherichia coli ECRC101 0.71 MCAODC_01460 carA carbamoyl phosphate synthase small subunit 0.27 MCAODC_27835 proC pyrroline-5-carboxylate reductase
Escherichia coli ECRC99 0.71 KEDOAH_17210 carA carbamoyl phosphate synthase small subunit 0.27 KEDOAH_19355 proC pyrroline-5-carboxylate reductase
Escherichia coli ECRC62 0.71 BNILDI_08325 carA carbamoyl phosphate synthase small subunit 0.27 BNILDI_22950 proC pyrroline-5-carboxylate reductase
Escherichia coli ECRC101 0.71 OKFHMN_10945 carA carbamoyl phosphate synthase small subunit 0.27 OKFHMN_08610 proC pyrroline-5-carboxylate reductase
Escherichia coli ECRC102 0.71 NIAGMN_08795 carA carbamoyl phosphate synthase small subunit 0.27 NIAGMN_06665 proC pyrroline-5-carboxylate reductase
Alteromonas macleodii MIT1002 0.71 MIT1002_01466 Carbamoyl-phosphate synthase small chain 0.39 MIT1002_03062 Pyrroline-5-carboxylate reductase 0.95 37
Escherichia coli ECOR27 0.71 NOLOHH_03275 carA carbamoyl phosphate synthase small subunit 0.27 NOLOHH_01535 proC pyrroline-5-carboxylate reductase low > 57
Dickeya dadantii 3937 0.71 DDA3937_RS18310 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.38 DDA3937_RS17305 pyrroline-5-carboxylate reductase 0.74 54
Dickeya dianthicola ME23 0.71 DZA65_RS19385 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.38 DZA65_RS18440 pyrroline-5-carboxylate reductase
Dickeya dianthicola 67-19 0.71 HGI48_RS18245 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.38 HGI48_RS17350 pyrroline-5-carboxylate reductase
Escherichia coli ECOR38 0.71 HEPCGN_08930 carA carbamoyl phosphate synthase small subunit 0.28 HEPCGN_07250 proC pyrroline-5-carboxylate reductase low > 85
Shewanella loihica PV-4 0.71 Shew_2839 carbamoyl phosphate synthase small subunit (RefSeq) 0.37 Shew_1136 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.88 39
Lysobacter sp. OAE881 0.70 ABIE51_RS11625 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.48 ABIE51_RS16065 pyrroline-5-carboxylate reductase low > 62
Shewanella sp. ANA-3 0.70 Shewana3_0967 carbamoyl phosphate synthase small subunit (RefSeq) 0.37 Shewana3_1193 pyrroline-5-carboxylate reductase (RefSeq) 0.90 51
Serratia liquefaciens MT49 0.70 IAI46_03190 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.37 IAI46_21415 pyrroline-5-carboxylate reductase 0.85 9
Acinetobacter radioresistens SK82 0.70 MPMX26_00767 Carbamoyl-phosphate synthase small chain 0.46 MPMX26_00572 Pyrroline-5-carboxylate reductase low > 36
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.2914.1 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.46 Xcc-8004.1710.1 Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
Dechlorosoma suillum PS 0.69 Dsui_3065 carbamoyl-phosphate synthase, small subunit 0.44 Dsui_0602 pyrroline-5-carboxylate reductase
Pantoea sp. MT58 0.69 IAI47_16120 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.28 IAI47_14945 pyrroline-5-carboxylate reductase 0.84 54
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS13520 carbamoyl phosphate synthase small subunit 0.39 RR42_RS17360 pyrroline-5-carboxylate reductase
Ralstonia solanacearum PSI07 0.69 RPSI07_RS15245 carbamoyl-phosphate synthase small subunit 0.37 RPSI07_RS11720 pyrroline-5-carboxylate reductase
Ralstonia solanacearum UW163 0.68 UW163_RS15510 carbamoyl-phosphate synthase small subunit 0.38 UW163_RS08045 pyrroline-5-carboxylate reductase
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS02200 carbamoyl-phosphate synthase small subunit 0.38 RALBFv3_RS05580 pyrroline-5-carboxylate reductase
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS14150 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.39 ABZR87_RS01230 pyrroline-5-carboxylate reductase
Paraburkholderia sabiae LMG 24235 0.68 QEN71_RS04775 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.41 QEN71_RS26600 pyrroline-5-carboxylate reductase
Erwinia tracheiphila SCR3 0.68 LU632_RS02755 carA glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.29 LU632_RS18995 proC pyrroline-5-carboxylate reductase low > 74
Ralstonia solanacearum GMI1000 0.68 RS_RS07620 carbamoyl-phosphate synthase small subunit 0.37 RS_RS13440 pyrroline-5-carboxylate reductase
Herbaspirillum seropedicae SmR1 0.68 HSERO_RS06920 carbamoyl phosphate synthase small subunit 0.38 HSERO_RS18990 pyrroline-5-carboxylate reductase
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS17995 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.41 LRK54_RS04260 pyrroline-5-carboxylate reductase
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS14195 carbamoyl phosphate synthase small subunit 0.40 BPHYT_RS03490 pyrroline-5-carboxylate reductase
Rhodanobacter denitrificans MT42 0.66 LRK55_RS17850 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.41 LRK55_RS04030 pyrroline-5-carboxylate reductase
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS05605 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.42 ABZR86_RS10425 pyrroline-5-carboxylate reductase
Variovorax sp. OAS795 0.66 ABID97_RS17090 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.38 ABID97_RS01555 pyrroline-5-carboxylate reductase
Acidovorax sp. GW101-3H11 0.66 Ac3H11_435 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.38 Ac3H11_788 Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_07300 carbamoyl phosphate synthase small subunit 0.41 OKGIIK_11135 proC pyrroline-5-carboxylate reductase low > 52
Paraburkholderia graminis OAS925 0.66 ABIE53_003005 carbamoyl-phosphate synthase small subunit 0.42 ABIE53_000840 pyrroline-5-carboxylate reductase
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_04402 carbamoyl-phosphate synthase small subunit 0.41 H281DRAFT_04679 pyrroline-5-carboxylate reductase
Variovorax sp. SCN45 0.66 GFF377 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.38 GFF5553 Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
Hydrogenophaga sp. GW460-11-11-14-LB1 0.64 GFF4899 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.39 GFF2806 Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
Castellaniella sp019104865 MT123 0.62 ABCV34_RS15505 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.38 ABCV34_RS03610 pyrroline-5-carboxylate reductase
Phaeobacter inhibens DSM 17395 0.52 PGA1_c06670 carbamoyl-phosphate synthase small chain 0.30 PGA1_c24700 pyrroline-5-carboxylate reductase ProC 0.73 10
Azospirillum sp. SherDot2 0.52 MPMX19_00757 Carbamoyl-phosphate synthase small chain 0.29 MPMX19_01399 Pyrroline-5-carboxylate reductase
Rhodospirillum rubrum S1H 0.50 Rru_A2885 Carbamoyl-phosphate synthase, small subunit (NCBI) 0.30 Rru_A3281 Delta 1-pyrroline-5-carboxylate reductase (NCBI)
Magnetospirillum magneticum AMB-1 0.50 AMB_RS03600 carbamoyl-phosphate synthase small subunit 0.28 AMB_RS02820 pyrroline-5-carboxylate reductase
Rhodopseudomonas palustris CGA009 0.50 TX73_006555 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.30 TX73_022630 pyrroline-5-carboxylate reductase
Dinoroseobacter shibae DFL-12 0.49 Dshi_2387 carbamoyl-phosphate synthase, small subunit (RefSeq) 0.26 Dshi_2645 pyrroline-5-carboxylate reductase (RefSeq)
Sinorhizobium meliloti 1021 0.48 SMc01569 carbamoyl phosphate synthase small subunit 0.31 SMc02677 pyrroline-5-carboxylate reductase low > 103
Bosea sp. OAE506 0.47 ABIE41_RS11975 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.24 ABIE41_RS11365 pyrroline-5-carboxylate reductase
Sphingomonas koreensis DSMZ 15582 0.47 Ga0059261_4243 carbamoyl-phosphate synthase, small subunit 0.29 Ga0059261_3321 pyrroline-5-carboxylate reductase
Rhizobium sp. OAE497 0.47 ABIE40_RS12765 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.33 ABIE40_RS13005 pyrroline-5-carboxylate reductase
Agrobacterium fabrum C58 0.47 Atu2170 carbamoylphosphate synthase small chain 0.34 Atu2209 pyrroline-5-carboxylate reductase
Caulobacter crescentus NA1000 0.47 CCNA_02925 carbamoyl-phosphate synthase small chain 0.25 CCNA_00528 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data)
Caulobacter crescentus NA1000 Δfur 0.47 CCNA_02925 carbamoyl-phosphate synthase small chain 0.25 CCNA_00528 pyrroline-5-carboxylate reductase low > 67
Synechococcus elongatus PCC 7942 0.45 Synpcc7942_2122 carA carbamoyl phosphate synthase small subunit 0.29 Synpcc7942_2058 proC pyrroline-5-carboxylate reductase
Bifidobacterium breve UCC2003 0.39 BBR_RS13630 carbamoyl-phosphate synthase small subunit 0.14 BBR_RS14625 pyrroline-5-carboxylate reductase low > 34
Pedobacter sp. GW460-11-11-14-LB5 0.39 CA265_RS15240 carbamoyl phosphate synthase small subunit 0.15 CA265_RS18505 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data)
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_0226 carbamoyl-phosphate synthase, small subunit 0.27 Echvi_2635 pyrroline-5-carboxylate reductase
Desulfovibrio vulgaris Miyazaki F 0.39 DvMF_2370 carbamoyl phosphate synthase small subunit (RefSeq) 0.23 DvMF_3161 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.70 25
Desulfovibrio vulgaris Hildenborough JW710 0.38 DVU3113 carA carbamoyl-phosphate synthase, small subunit (TIGR) 0.28 DVU2332 proC pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data)
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_19490 carbamoyl phosphate synthase small subunit 0.19 CA264_07730 pyrroline-5-carboxylate reductase low > 74
Mycobacterium tuberculosis H37Rv 0.38 Rv1383 Probable carbamoyl-phosphate synthase small chain CarA (carbamoyl-phosphate synthetase glutamine chain) 0.25 Rv0500 Probable pyrroline-5-carboxylate reductase ProC (P5CR) (P5C reductase)
Mucilaginibacter yixingensis YX-36 DSM 26809 0.38 ABZR88_RS17830 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.19 ABZR88_RS09865 pyrroline-5-carboxylate reductase
Bacteroides thetaiotaomicron VPI-5482 0.33 BT0556 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) 0.22 BT3757 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) low > 81
Bacteroides ovatus ATCC 8483 0.33 BACOVA_03753 carbamoyl-phosphate synthase, small subunit 0.23 BACOVA_03587 pyrroline-5-carboxylate reductase low > 94
Phocaeicola vulgatus CL09T03C04 0.33 HMPREF1058_RS06875 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.20 HMPREF1058_RS08830 pyrroline-5-carboxylate reductase low > 67
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS01295 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.17 HMPREF1078_RS10620 pyrroline-5-carboxylate reductase low > 61
Phocaeicola dorei CL03T12C01 0.33 ABI39_RS20670 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.20 ABI39_RS02960 pyrroline-5-carboxylate reductase low > 72
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS16070 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.20 HMPREF1181_RS03440 pyrroline-5-carboxylate reductase low > 56

Not shown: 5 genomes with orthologs for PP_4724 only; 0 genomes with orthologs for PP_5095 only