Conservation of cofitness between PP_1216 and PP_1629 in Pseudomonas putida KT2440

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA 1.0 PP_1629 Protein RecA 0.40 7
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.88 Psyr_1378 RecA protein low > 86
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.88 Psyr_1378 RecA protein — —
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_03585 ATP-dependent DNA helicase RuvA 0.88 AO353_16805 recombinase RecA 0.27 14
Pseudomonas sp. S08-1 0.82 OH686_19130 Holliday junction DNA helicase RuvA 0.89 OH686_18205 protein RecA — —
Pseudomonas sp. RS175 0.82 PFR28_03413 Holliday junction ATP-dependent DNA helicase RuvA 0.88 PFR28_00472 Protein RecA low > 88
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_1852 Holliday junction DNA helicase RuvA 0.89 PfGW456L13_4668 RecA protein 0.40 33
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_5536 Holliday junction DNA helicase RuvA 0.88 Pf6N2E2_2993 RecA protein — —
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_638 Holliday junction DNA helicase RuvA 0.88 Pf1N1B4_3143 RecA protein — —
Pseudomonas fluorescens SBW25 0.81 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.88 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.88 PFLU_RS05885 recombinase RecA 0.49 3
Pseudomonas simiae WCS417 0.81 PS417_22450 ATP-dependent DNA helicase RuvA 0.88 PS417_05815 recombinase RecA 0.28 47
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_18020 ATP-dependent DNA helicase RuvA 0.88 AO356_05670 recombinase RecA 0.40 9
Pseudomonas stutzeri RCH2 0.80 Psest_1496 Holliday junction DNA helicase, RuvA subunit 0.89 Psest_2872 protein RecA 0.31 3
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_09245 Holliday junction branch migration protein RuvA 0.73 CSW01_02875 DNA recombination/repair protein RecA low > 62
Shewanella sp. ANA-3 0.56 Shewana3_1956 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.72 Shewana3_1126 recA recombinase A (RefSeq) low > 73
Shewanella oneidensis MR-1 0.56 SO2430 ruvA Holliday junction DNA helicase RuvA (NCBI ptt file) 0.73 SO3430 recA recA protein (NCBI ptt file) 0.38 21
Alteromonas macleodii MIT1002 0.55 MIT1002_01332 Holliday junction ATP-dependent DNA helicase RuvA 0.75 MIT1002_00955 Recombinase A — —
Rahnella sp. WP5 0.54 EX31_RS11675 Holliday junction branch migration protein RuvA 0.73 EX31_RS07800 recombinase RecA low > 89
Shewanella loihica PV-4 0.53 Shew_2076 Holliday junction DNA helicase RuvA (RefSeq) 0.71 Shew_1215 recA recombinase A (RefSeq) — —
Enterobacter asburiae PDN3 0.53 EX28DRAFT_0695 Holliday junction DNA helicase subunit RuvA 0.71 EX28DRAFT_2785 protein RecA — —
Escherichia coli Nissle 1917 0.53 ECOLIN_RS10365 Holliday junction branch migration protein RuvA 0.71 ECOLIN_RS15060 recombinase RecA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_01867 Holliday junction ATP-dependent DNA helicase RuvA 0.71 OHPLBJKB_01035 Protein RecA — —
Escherichia coli BW25113 0.53 b1861 ruvA Holliday junction DNA helicase motor protein (NCBI) 0.71 b2699 recA recombinase A (NCBI) 0.35 29
Escherichia fergusonii Becca 0.53 EFB2_02081 Holliday junction ATP-dependent DNA helicase RuvA 0.71 EFB2_01225 Protein RecA — —
Escherichia coli BL21 0.53 ECD_01832 component of RuvABC resolvasome, regulatory subunit 0.71 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor — —
Enterobacter sp. TBS_079 0.52 MPMX20_02767 Holliday junction ATP-dependent DNA helicase RuvA 0.71 MPMX20_03580 Protein RecA low > 85
Escherichia coli ECOR38 0.52 HEPCGN_04690 ruvA Holliday junction branch migration protein RuvA 0.71 HEPCGN_19900 recA recombinase RecA — —
Escherichia coli ECRC102 0.52 NIAGMN_01780 ruvA Holliday junction branch migration protein RuvA 0.71 NIAGMN_18475 recA recombinase RecA — —
Escherichia coli ECRC101 0.52 MCAODC_19125 ruvA Holliday junction branch migration protein RuvA 0.71 MCAODC_11230 recA recombinase RecA — —
Escherichia coli ECRC99 0.52 KEDOAH_01825 ruvA Holliday junction branch migration protein RuvA 0.71 KEDOAH_07430 recA recombinase RecA — —
Shewanella amazonensis SB2B 0.52 Sama_1840 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.72 Sama_1046 recA recombinase A (RefSeq) — —
Escherichia coli ECOR27 0.52 NOLOHH_16725 ruvA Holliday junction branch migration protein RuvA 0.71 NOLOHH_12545 recA recombinase RecA — —
Escherichia coli ECRC101 0.52 OKFHMN_26280 ruvA Holliday junction branch migration protein RuvA 0.71 OKFHMN_20705 recA recombinase RecA — —
Escherichia coli ECRC62 0.52 BNILDI_15515 ruvA Holliday junction branch migration protein RuvA 0.71 BNILDI_11105 recA recombinase RecA — —
Escherichia coli ECRC98 0.52 JDDGAC_00855 ruvA Holliday junction branch migration protein RuvA 0.71 JDDGAC_24370 recA recombinase RecA — —
Klebsiella michiganensis M5al 0.52 BWI76_RS18150 Holliday junction branch migration protein RuvA 0.72 BWI76_RS22180 recombinase RecA — —
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_1125 Holliday junction DNA helicase subunit RuvA 0.73 B158DRAFT_1531 protein RecA 0.62 19
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF1640 Holliday junction DNA helicase RuvA 0.72 GFF4693 RecA protein — —
Pantoea sp. MT58 0.51 IAI47_08445 Holliday junction branch migration protein RuvA 0.70 IAI47_04300 recombinase RecA low > 76
Erwinia tracheiphila SCR3 0.51 LU632_RS13415 ruvA Holliday junction branch migration protein RuvA 0.72 LU632_RS15735 recA recombinase RecA — —
Marinobacter adhaerens HP15 0.51 HP15_2041 Holliday junction ATP-dependent DNA helicase RuvA 0.80 HP15_1048 recombinase A — —
Dickeya dadantii 3937 0.50 DDA3937_RS10080 Holliday junction branch migration protein RuvA 0.72 DDA3937_RS16245 recombinase RecA — —
Pectobacterium carotovorum WPP14 0.50 HER17_RS11845 Holliday junction branch migration protein RuvA 0.73 HER17_RS05045 recombinase RecA — —
Dickeya dianthicola ME23 0.48 DZA65_RS10525 Holliday junction branch migration protein RuvA 0.72 DZA65_RS17450 recombinase RecA — —
Dickeya dianthicola 67-19 0.48 HGI48_RS10110 Holliday junction branch migration protein RuvA 0.72 HGI48_RS16355 recombinase RecA — —
Serratia liquefaciens MT49 0.48 IAI46_14625 Holliday junction branch migration protein RuvA 0.71 IAI46_03840 recombinase RecA — —
Acinetobacter radioresistens SK82 0.45 MPMX26_02185 Holliday junction ATP-dependent DNA helicase RuvA 0.74 MPMX26_01308 Protein RecA low > 36
Lysobacter sp. OAE881 0.45 ABIE51_RS05045 Holliday junction branch migration protein RuvA 0.71 ABIE51_RS07800 recombinase RecA low > 62
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16615 holliday junction ATP-dependent DNA helicase RuvA 0.68 BPHYT_RS16360 recombinase RecA — —
Dechlorosoma suillum PS 0.45 Dsui_0485 Holliday junction DNA helicase, RuvA subunit 0.69 Dsui_0707 protein RecA — —
Variovorax sp. SCN45 0.44 GFF2073 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) 0.65 GFF5390 RecA protein low > 127
Rhodanobacter denitrificans MT42 0.44 LRK55_RS04690 Holliday junction branch migration protein RuvA 0.75 LRK55_RS14695 recombinase RecA — —
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS04910 Holliday junction branch migration protein RuvA 0.75 LRK54_RS14980 recombinase RecA — —
Castellaniella sp019104865 MT123 0.44 ABCV34_RS07980 Holliday junction branch migration protein RuvA 0.70 ABCV34_RS04460 recombinase RecA low > 48
Variovorax sp. OAS795 0.44 ABID97_RS24920 Holliday junction branch migration protein RuvA 0.65 ABID97_RS02275 recombinase RecA low > 91
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS26795 Holliday junction branch migration protein RuvA 0.68 QEN71_RS02335 recombinase RecA — —
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS10840 Holliday junction branch migration protein RuvA 0.74 ABZR86_RS00660 recombinase RecA 0.66 4
Paraburkholderia graminis OAS925 0.43 ABIE53_003494 Holliday junction DNA helicase RuvA 0.69 ABIE53_003448 recombination protein RecA low > 113
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF1666 Holliday junction DNA helicase RuvA 0.64 GFF2500 RecA protein 0.61 10
Ralstonia solanacearum GMI1000 0.42 RS_RS02490 Holliday junction branch migration protein RuvA 0.65 RS_RS02760 DNA recombination/repair protein RecA — —
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_01840 ruvA Holliday junction branch migration protein RuvA 0.75 OKGIIK_03740 recA recombinase RecA — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS21550 Holliday junction branch migration protein RuvA 0.66 RPSI07_RS21260 recombinase RecA — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS11670 Holliday junction branch migration protein RuvA 0.65 RALBFv3_RS12010 recombinase RecA — —
Ralstonia solanacearum UW163 0.42 UW163_RS01915 Holliday junction branch migration protein RuvA 0.65 UW163_RS01625 recombinase RecA — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1436.1 Holliday junction DNA helicase RuvA 0.69 Xcc-8004.3111.1 RecA protein — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02705 Holliday junction DNA helicase RuvA 0.67 RR42_RS03080 recombinase RecA 0.38 18
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_04254 Holliday junction DNA helicase subunit RuvA 0.69 H281DRAFT_04208 RecA protein — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS07625 Holliday junction branch migration protein RuvA 0.65 ABZR87_RS07965 recombinase RecA 0.27 49
Acidovorax sp. GW101-3H11 0.40 Ac3H11_4683 Holliday junction DNA helicase RuvA 0.66 Ac3H11_1255 RecA protein — —
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS02090 Holliday junction DNA helicase RuvA 0.64 HSERO_RS03270 protein RecA 0.53 3
Pontibacter actiniarum KMM 6156, DSM 19842 0.37 CA264_14545 Holliday junction branch migration protein RuvA 0.61 CA264_19695 DNA recombination/repair protein RecA — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.34 Echvi_4082 Holliday junction DNA helicase, RuvA subunit 0.57 Echvi_0044 protein RecA 0.37 3
Synechococcus elongatus PCC 7942 0.34 Synpcc7942_2298 ruvA Holliday junction DNA helicase motor protein 0.59 Synpcc7942_0348 recA recombinase A — —
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS13015 Holliday junction branch migration protein RuvA 0.56 HMPREF1078_RS00095 recombinase RecA low > 61
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0820 Holliday junction DNA helicase subunit RuvA 0.69 Ga0059261_0204 protein RecA — —
Bacteroides ovatus ATCC 8483 0.31 BACOVA_00691 Holliday junction DNA helicase RuvA 0.57 BACOVA_05402 RecA protein — —
Azospirillum brasilense Sp245 0.30 AZOBR_RS09045 Holliday junction DNA helicase RuvA 0.68 AZOBR_RS11095 recombinase RecA — —
Azospirillum sp. SherDot2 0.30 MPMX19_00697 Holliday junction ATP-dependent DNA helicase RuvA 0.67 MPMX19_00869 Protein RecA — —
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS07915 Holliday junction branch migration protein RuvA 0.57 HMPREF1181_RS11910 recombinase RecA low > 56
Rhodopseudomonas palustris CGA009 0.30 TX73_005655 Holliday junction branch migration protein RuvA 0.68 TX73_019940 recombinase RecA — —
Magnetospirillum magneticum AMB-1 0.30 AMB_RS16255 Holliday junction branch migration protein RuvA 0.66 AMB_RS03205 DNA recombination/repair protein RecA — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS18310 Holliday junction branch migration protein RuvA 0.58 ABZR88_RS16740 recombinase RecA — —
Bacteroides thetaiotaomicron VPI-5482 0.29 BT1978 Holliday junction DNA helicase ruvA (NCBI ptt file) 0.56 BT4610 RecA (NCBI ptt file) — —
Bosea sp. OAE506 0.29 ABIE41_RS09475 Holliday junction branch migration protein RuvA 0.64 ABIE41_RS13335 recombinase RecA — —
Rhodospirillum rubrum S1H 0.28 Rru_A1088 DNA recombination protein RuvA (NCBI) 0.67 Rru_A2819 RecA DNA recombination protein (NCBI) — —
Agrobacterium fabrum C58 0.28 Atu3723 Holliday junction DNA helicase RuvA 0.66 Atu1874 RecA protein — —
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS18995 Holliday junction branch migration protein RuvA 0.58 CA265_RS00600 recombinase RecA 0.54 7
Bifidobacterium breve UCC2003 0.27 BBR_RS15655 Holliday junction branch migration protein RuvA 0.63 BBR_RS16530 recombinase RecA 0.74 6
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS08200 Holliday junction branch migration protein RuvA 0.57 ABI39_RS11930 recombinase RecA — —
Rhizobium sp. OAE497 0.27 ABIE40_RS15745 Holliday junction branch migration protein RuvA 0.67 ABIE40_RS10320 recombinase RecA low > 107
Dinoroseobacter shibae DFL-12 0.27 Dshi_1104 Holliday junction DNA helicase RuvA (RefSeq) 0.63 Dshi_1643 recA protein (RefSeq) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS15860 Holliday junction branch migration protein RuvA 0.65 A4249_RS12615 recombinase RecA — —
Desulfovibrio vulgaris Hildenborough JW710 0.26 DVU2256 ruvA Holliday junction DNA helicase RuvA (TIGR) 0.60 DVU1090 recA recA protein (TIGR) low > 55
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS00595 Holliday junction branch migration protein RuvA 0.57 HMPREF1058_RS15965 recombinase RecA 0.59 44
Sinorhizobium meliloti 1021 0.26 SMc03966 Holliday junction DNA helicase RuvA 0.67 SMc00760 recombinase A — —
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_3204 Holliday junction DNA helicase RuvA (RefSeq) 0.59 DvMF_0876 recA recombinase A (RefSeq) 0.40 11
Phaeobacter inhibens DSM 17395 0.24 PGA1_c05860 holliday junction ATP-dependent DNA helicase RuvA 0.67 PGA1_c15260 protein recA (recombinase A) 0.38 11
Fusobacterium nucleatum SB010 0.24 HUW76_06655 Holliday junction branch migration protein RuvA 0.53 HUW76_07355 recombinase RecA low > 35
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_03345 Holliday junction DNA helicase RuvA 0.63 CCNA_01141 RecA protein — —
Caulobacter crescentus NA1000 0.24 CCNA_03345 Holliday junction DNA helicase RuvA 0.63 CCNA_01141 RecA protein low > 66

Not shown: 1 genomes with orthologs for PP_1216 only; 0 genomes with orthologs for PP_1629 only