Conservation of cofitness between LU632_RS22445 and LU632_RS16985 in Erwinia tracheiphila SCR3

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Erwinia tracheiphila SCR3 1.0 LU632_RS22445 aroE shikimate dehydrogenase 1.0 LU632_RS16985 recN DNA repair protein RecN 0.61 8
Erwinia amylovora T8 0.67 OLJFJH_03685 shikimate dehydrogenase 0.72 OLJFJH_10175 DNA repair protein RecN — —
Serratia liquefaciens MT49 0.67 IAI46_23240 shikimate dehydrogenase 0.69 IAI46_19635 DNA repair protein RecN low > 86
Pantoea sp. MT58 0.66 IAI47_02315 shikimate dehydrogenase 0.73 IAI47_04810 DNA repair protein RecN — —
Enterobacter asburiae PDN3 0.64 EX28DRAFT_0046 shikimate dehydrogenase 0.71 EX28DRAFT_2719 DNA repair protein RecN low > 76
Escherichia coli ECRC100 0.64 OKFHMN_17565 aroE shikimate dehydrogenase 0.73 OKFHMN_21145 recN DNA repair protein RecN low > 80
Escherichia coli ECRC98 0.64 JDDGAC_21185 aroE shikimate dehydrogenase 0.72 JDDGAC_24810 recN DNA repair protein RecN low > 86
Escherichia coli ECRC101 0.64 MCAODC_08085 aroE shikimate dehydrogenase 0.73 MCAODC_11670 recN DNA repair protein RecN low > 87
Escherichia coli Nissle 1917 0.64 ECOLIN_RS18840 shikimate dehydrogenase 0.73 ECOLIN_RS14775 DNA repair protein RecN low > 55
Escherichia coli ECRC99 0.64 KEDOAH_10585 aroE shikimate dehydrogenase 0.73 KEDOAH_07075 recN DNA repair protein RecN — —
Enterobacter sp. TBS_079 0.64 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.72 MPMX20_03486 DNA repair protein RecN low > 85
Escherichia coli ECRC102 0.64 NIAGMN_15325 aroE shikimate dehydrogenase 0.73 NIAGMN_18915 recN DNA repair protein RecN — —
Escherichia coli ECRC62 0.63 BNILDI_02165 aroE shikimate dehydrogenase 0.73 BNILDI_11620 recN DNA repair protein RecN low > 75
Escherichia coli BW25113 0.63 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.73 b2616 recN recombination and repair protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.73 OHPLBJKB_01091 DNA repair protein RecN low > 73
Escherichia coli BL21 0.63 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.72 ECD_02504 recombination and repair protein low > 61
Escherichia coli ECOR27 0.63 NOLOHH_09355 aroE shikimate dehydrogenase 0.73 NOLOHH_12815 recN DNA repair protein RecN low > 75
Escherichia coli ECOR38 0.63 HEPCGN_16385 aroE shikimate dehydrogenase 0.73 HEPCGN_20265 recN DNA repair protein RecN low > 87
Escherichia fergusonii Becca 0.63 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.73 EFB2_01277 DNA repair protein RecN 0.62 66
Rahnella sp. WP5 0.62 EX31_RS15950 shikimate dehydrogenase 0.68 EX31_RS21760 DNA repair protein RecN — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.71 GFF4162 DNA repair protein RecN low > 78
Dickeya dianthicola 67-19 0.62 HGI48_RS19190 shikimate dehydrogenase 0.66 HGI48_RS04320 DNA repair protein RecN — —
Dickeya dianthicola ME23 0.62 DZA65_RS20315 shikimate dehydrogenase 0.66 DZA65_RS04235 DNA repair protein RecN — —
Dickeya dadantii 3937 0.62 DDA3937_RS19100 shikimate dehydrogenase 0.66 DDA3937_RS04325 DNA repair protein RecN — —
Klebsiella michiganensis M5al 0.61 BWI76_RS25645 shikimate dehydrogenase 0.70 BWI76_RS21560 DNA repair protein RecN low > 92
Pectobacterium carotovorum WPP14 0.61 HER17_RS02250 shikimate dehydrogenase 0.66 HER17_RS17420 DNA repair protein RecN low > 75
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_00280 shikimate dehydrogenase 0.51 CSW01_04395 DNA repair protein RecN low > 62
Shewanella loihica PV-4 0.46 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.50 Shew_1196 recombination and repair protein (RefSeq) low > 60
Pseudomonas stutzeri RCH2 0.46 Psest_0029 shikimate 5-dehydrogenase 0.37 Psest_0962 DNA repair protein RecN — —
Shewanella sp. ANA-3 0.45 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.52 Shewana3_1104 recombination and repair protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.45 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.52 SO3462 recN DNA repair protein RecN (NCBI ptt file) low > 76
Dechlorosoma suillum PS 0.45 Dsui_0443 shikimate 5-dehydrogenase 0.32 Dsui_3072 DNA repair protein RecN — —
Pseudomonas simiae WCS417 0.45 PS417_00125 shikimate dehydrogenase 0.37 PS417_24070 recombination and repair protein — —
Shewanella amazonensis SB2B 0.45 Sama_0052 shikimate dehydrogenase (RefSeq) 0.51 Sama_1026 recombination and repair protein (RefSeq) low > 62
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.38 Pf1N1B4_1178 DNA repair protein RecN low > 87
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_10670 shikimate dehydrogenase 0.37 AO353_05660 DNA repair protein RecN low > 101
Pseudomonas sp. RS175 0.44 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.37 PFR28_00071 DNA repair protein RecN — —
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.38 Pf6N2E2_3370 DNA repair protein RecN — —
Pseudomonas sp. S08-1 0.44 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.37 OH686_17050 DNA repair protein RecN low > 80
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.38 PfGW456L13_5106 DNA repair protein RecN low > 87
Pseudomonas fluorescens SBW25 0.44 PFLU_RS00120 shikimate dehydrogenase 0.37 PFLU_RS25910 DNA repair protein RecN — —
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS00120 shikimate dehydrogenase 0.37 PFLU_RS25910 DNA repair protein RecN — —
Pseudomonas putida KT2440 0.44 PP_0074 shikimate 5-dehydrogenase 0.36 PP_4729 factor used in recombination and DNA repair — —
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_0025 shikimate dehydrogenase 0.37 Psyr_4197 DNA replication and repair protein RecN low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_0025 shikimate dehydrogenase 0.37 Psyr_4197 DNA replication and repair protein RecN low > 86
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_11315 shikimate dehydrogenase 0.37 AO356_07510 DNA repair protein RecN low > 104
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS01990 shikimate 5-dehydrogenase 0.35 HSERO_RS03060 DNA repair protein low > 78
Marinobacter adhaerens HP15 0.41 HP15_3750 shikimate dehydrogenase 0.40 HP15_3084 DNA repair protein RecN — —
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS27130 shikimate dehydrogenase 0.35 QEN71_RS26535 DNA repair protein RecN low > 153
Paraburkholderia graminis OAS925 0.38 ABIE53_003560 shikimate dehydrogenase 0.33 ABIE53_000856 DNA repair protein RecN (Recombination protein N) — —
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS16975 shikimate 5-dehydrogenase 0.33 BPHYT_RS03560 DNA repair protein low > 109
Paraburkholderia bryophila 376MFSha3.1 0.38 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.33 H281DRAFT_04692 DNA replication and repair protein RecN — —
Ralstonia solanacearum GMI1000 0.37 RS_RS13890 shikimate dehydrogenase 0.36 RS_RS13275 DNA repair protein RecN low > 80
Ralstonia sp. UNC404CL21Col 0.37 ABZR87_RS01605 shikimate dehydrogenase 0.36 ABZR87_RS01065 DNA repair protein RecN low > 80
Ralstonia solanacearum IBSBF1503 0.37 RALBFv3_RS05945 shikimate dehydrogenase 0.36 RALBFv3_RS05415 DNA repair protein RecN low > 76
Ralstonia solanacearum PSI07 0.37 RPSI07_RS11300 shikimate dehydrogenase 0.36 RPSI07_RS11890 DNA repair protein RecN low > 81
Ralstonia solanacearum UW163 0.37 UW163_RS07680 shikimate dehydrogenase 0.36 UW163_RS08210 DNA repair protein RecN — —
Castellaniella sp019104865 MT123 0.36 ABCV34_RS11620 shikimate dehydrogenase 0.31 ABCV34_RS07470 DNA repair protein RecN low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.31 GFF829 DNA repair protein RecN low > 90
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.28 MPMX26_00239 DNA repair protein RecN low > 36
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS17645 shikimate dehydrogenase 0.34 RR42_RS05910 DNA repair protein low > 128
Rhodanobacter denitrificans MT42 0.33 LRK55_RS08360 shikimate dehydrogenase 0.34 LRK55_RS17815 DNA repair protein RecN low > 63
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS08595 shikimate dehydrogenase 0.34 LRK54_RS17960 DNA repair protein RecN low > 59
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS14985 shikimate dehydrogenase 0.35 ABZR86_RS05665 DNA repair protein RecN low > 74
Alteromonas macleodii MIT1002 0.31 MIT1002_00029 Shikimate dehydrogenase 0.43 MIT1002_01443 Recombination protein N — —
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.30 Xcc-8004.3431.1 DNA repair protein RecN low > 74
Acidovorax sp. GW101-3H11 0.30 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.32 Ac3H11_3460 DNA repair protein RecN low > 79
Lysobacter sp. OAE881 0.30 ABIE51_RS01815 shikimate dehydrogenase 0.29 ABIE51_RS11655 DNA repair protein RecN low > 62
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_15365 aroE shikimate dehydrogenase 0.35 OKGIIK_07340 recN DNA repair protein RecN low > 52
Kangiella aquimarina DSM 16071 0.29 B158DRAFT_0259 shikimate 5-dehydrogenase 0.36 B158DRAFT_0601 DNA replication and repair protein RecN low > 40
Variovorax sp. SCN45 0.27 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.29 GFF2357 DNA repair protein RecN low > 127
Dinoroseobacter shibae DFL-12 0.24 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) 0.22 Dshi_2413 DNA repair protein RecN (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.23 PGA1_c35150 shikimate dehydrogenase AroE 0.23 PGA1_c09720 DNA repair protein RecN — —
Agrobacterium fabrum C58 0.22 Atu0003 shikimate 5-dehydrogenase 0.25 Atu2083 DNA repair protein RecN — —
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.18 DVU2463 recN DNA repair protein RecN (TIGR) — —
Rhodospirillum rubrum S1H 0.21 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.21 Rru_A0940 DNA repair protein RecN (NCBI) — —
Sinorhizobium meliloti 1021 0.21 SMc02791 shikimate 5-dehydrogenase 0.27 SMc01877 DNA repair protein — —
Azospirillum sp. SherDot2 0.21 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.24 MPMX19_01601 DNA repair protein RecN — —
Rhodopseudomonas palustris CGA009 0.20 TX73_022410 shikimate dehydrogenase 0.23 TX73_018240 DNA repair protein RecN — —
Azospirillum brasilense Sp245 0.19 AZOBR_RS01765 shikimate 5-dehydrogenase 0.25 AZOBR_RS12395 DNA repair protein RecN — —
Synechococcus elongatus PCC 7942 0.18 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.22 Synpcc7942_1779 recN DNA repair protein RecN — —
Bosea sp. OAE506 0.18 ABIE41_RS04650 shikimate dehydrogenase 0.23 ABIE41_RS12645 DNA repair protein RecN — —
Caulobacter crescentus NA1000 0.17 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.20 CCNA_02062 DNA repair protein recN low > 66
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_00003 shikimate 5-dehydrogenase 0.20 CCNA_02062 DNA repair protein recN low > 67
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.16 DvMF_0923 SMC domain protein (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.17 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.25 Ga0059261_1026 DNA repair protein RecN low > 68
Magnetospirillum magneticum AMB-1 0.16 AMB_RS23010 shikimate dehydrogenase 0.25 AMB_RS19520 DNA repair protein RecN — —
Bacteroides ovatus ATCC 8483 0.15 BACOVA_05065 putative shikimate dehydrogenase 0.22 BACOVA_00200 DNA repair protein RecN — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_19075 shikimate dehydrogenase 0.21 CA264_13235 DNA repair protein RecN — —
Bacteroides thetaiotaomicron VPI-5482 0.15 BT4215 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.22 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS13660 shikimate dehydrogenase 0.20 A4249_RS02620 DNA repair protein RecN — —
Fusobacterium nucleatum SB010 0.15 HUW76_10445 shikimate dehydrogenase 0.22 HUW76_08055 DNA repair protein RecN low > 35
Parabacteroides merdae CL09T00C40 0.14 HMPREF1078_RS14200 shikimate dehydrogenase 0.23 HMPREF1078_RS02000 DNA repair protein RecN low > 61
Bacteroides stercoris CC31F 0.14 HMPREF1181_RS06320 shikimate dehydrogenase 0.22 HMPREF1181_RS10900 DNA repair protein RecN low > 56
Echinicola vietnamensis KMM 6221, DSM 17526 0.14 Echvi_1145 Shikimate 5-dehydrogenase 0.23 Echvi_2067 DNA repair protein RecN — —
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS16750 shikimate dehydrogenase 0.22 HMPREF1058_RS18225 DNA repair protein RecN low > 67
Phocaeicola dorei CL03T12C01 0.13 ABI39_RS12665 shikimate dehydrogenase 0.22 ABI39_RS14500 DNA repair protein RecN low > 72
Pedobacter sp. GW460-11-11-14-LB5 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.23 CA265_RS14855 DNA repair protein RecN — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.12 ABZR88_RS20055 shikimate dehydrogenase 0.23 ABZR88_RS06580 DNA repair protein RecN — —
Mycobacterium tuberculosis H37Rv 0.12 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.18 Rv1696 Probable DNA repair protein RecN (recombination protein N) — —

Not shown: 4 genomes with orthologs for LU632_RS22445 only; 1 genomes with orthologs for LU632_RS16985 only