Conservation of cofitness between IAI47_00920 and IAI47_03860 in Pantoea sp. MT58

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pantoea sp. MT58 1.0 IAI47_00920 argininosuccinate lyase 1.0 IAI47_03860 diaminopimelate decarboxylase 0.96 19
Klebsiella michiganensis M5al 0.90 BWI76_RS00855 argininosuccinate lyase 0.72 BWI76_RS23360 diaminopimelate decarboxylase 0.83 47
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.90 GFF2346 Argininosuccinate lyase (EC 4.3.2.1) 0.74 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 78
Enterobacter asburiae PDN3 0.89 EX28DRAFT_4422 argininosuccinate lyase 0.75 EX28DRAFT_2916 diaminopimelate decarboxylase 0.89 9
Erwinia tracheiphila SCR3 0.89 LU632_RS19600 argH argininosuccinate lyase 0.78 LU632_RS06040 lysA diaminopimelate decarboxylase 0.85 13
Escherichia coli Nissle 1917 0.89 ECOLIN_RS22855 argininosuccinate lyase 0.74 ECOLIN_RS15930 diaminopimelate decarboxylase low > 52
Escherichia fergusonii Becca 0.89 EFB2_04654 Argininosuccinate lyase 0.74 EFB2_01045 Diaminopimelate decarboxylase low > 86
Enterobacter sp. TBS_079 0.89 MPMX20_04520 Argininosuccinate lyase 0.74 MPMX20_03705 Diaminopimelate decarboxylase 0.75 64
Escherichia coli ECRC101 0.88 OKFHMN_13575 argH argininosuccinate lyase 0.74 OKFHMN_19945 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC98 0.88 JDDGAC_17200 argH argininosuccinate lyase 0.74 JDDGAC_23610 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC99 0.88 KEDOAH_14585 argH argininosuccinate lyase 0.74 KEDOAH_08185 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC101 0.88 MCAODC_04075 argH argininosuccinate lyase 0.74 MCAODC_10470 lysA diaminopimelate decarboxylase — —
Escherichia coli ECOR38 0.88 HEPCGN_12220 argH argininosuccinate lyase 0.74 HEPCGN_19565 lysA diaminopimelate decarboxylase low > 85
Escherichia coli BW25113 0.88 b3960 argH argininosuccinate lyase (NCBI) 0.74 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.95 4
Escherichia coli BL21 0.88 ECD_03845 argininosuccinate lyase 0.74 ECD_02686 diaminopimelate decarboxylase, PLP-binding 0.78 14
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_04090 Argininosuccinate lyase 0.74 OHPLBJKB_00891 Diaminopimelate decarboxylase low > 73
Escherichia coli ECOR27 0.88 NOLOHH_05720 argH argininosuccinate lyase 0.74 NOLOHH_11830 lysA diaminopimelate decarboxylase low > 57
Escherichia coli ECRC62 0.88 BNILDI_05805 argH argininosuccinate lyase 0.74 BNILDI_10310 lysA diaminopimelate decarboxylase — —
Pectobacterium carotovorum WPP14 0.88 HER17_RS20620 argininosuccinate lyase 0.74 HER17_RS03710 diaminopimelate decarboxylase 0.72 46
Serratia liquefaciens MT49 0.87 IAI46_24500 argininosuccinate lyase 0.75 IAI46_20520 diaminopimelate decarboxylase 0.72 39
Escherichia coli ECRC102 0.87 NIAGMN_11325 argH argininosuccinate lyase 0.74 NIAGMN_17715 lysA diaminopimelate decarboxylase — —
Rahnella sp. WP5 0.87 EX31_RS14180 argininosuccinate lyase 0.72 EX31_RS13275 diaminopimelate decarboxylase 0.96 31
Dickeya dadantii 3937 0.87 DDA3937_RS20340 argininosuccinate lyase 0.74 DDA3937_RS17425 diaminopimelate decarboxylase 0.83 20
Dickeya dianthicola 67-19 0.86 HGI48_RS00885 argininosuccinate lyase 0.73 HGI48_RS17485 diaminopimelate decarboxylase 0.85 30
Dickeya dianthicola ME23 0.85 DZA65_RS00945 argininosuccinate lyase 0.74 DZA65_RS18550 diaminopimelate decarboxylase 0.86 11
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_13360 argininosuccinate lyase 0.17 CSW01_00635 diaminopimelate decarboxylase low > 62
Shewanella amazonensis SB2B 0.65 Sama_0260 argininosuccinate lyase (RefSeq) 0.16 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.96 12
Shewanella loihica PV-4 0.62 Shew_0206 argininosuccinate lyase (RefSeq) 0.16 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.98 20
Shewanella sp. ANA-3 0.62 Shewana3_3901 argininosuccinate lyase (RefSeq) 0.16 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.90 9
Shewanella oneidensis MR-1 0.61 SO0279 argH argininosuccinate lyase (NCBI ptt file) 0.16 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.96 7
Alteromonas macleodii MIT1002 0.56 MIT1002_00467 Argininosuccinate lyase 0.13 MIT1002_00160 Diaminopimelate decarboxylase 0.85 58
Pseudomonas sp. S08-1 0.47 OH686_13885 argininosuccinate lyase 0.18 OH686_13800 diaminopimelate decarboxylase 0.66 39
Marinobacter adhaerens HP15 0.46 HP15_243 argininosuccinate lyase 0.16 HP15_247 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS29220 argininosuccinate lyase 0.19 PFLU_RS29265 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25 0.46 PFLU_RS29220 argininosuccinate lyase 0.19 PFLU_RS29265 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_2183 Argininosuccinate lyase (EC 4.3.2.1) 0.19 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_0065 argininosuccinate lyase 0.19 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas stutzeri RCH2 0.45 Psest_3751 argininosuccinate lyase 0.19 Psest_3764 diaminopimelate decarboxylase — —
Pseudomonas simiae WCS417 0.45 PS417_27540 argininosuccinate lyase 0.19 PS417_27580 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_0065 argininosuccinate lyase 0.19 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_854 Argininosuccinate lyase (EC 4.3.2.1) 0.19 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.90 3
Pseudomonas sp. RS175 0.45 PFR28_04367 Argininosuccinate lyase 0.19 PFR28_04375 Diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_09000 argininosuccinate lyase 0.20 AO353_09035 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_12780 argininosuccinate lyase 0.19 AO356_12740 diaminopimelate decarboxylase — —
Pseudomonas putida KT2440 0.45 PP_0184 Argininosuccinate lyase 0.59 PP_2077 diaminopimelate decarboxylase low > 96
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_4429 Argininosuccinate lyase (EC 4.3.2.1) 0.19 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Azospirillum brasilense Sp245 0.44 AZOBR_RS16935 argininosuccinate lyase 0.19 AZOBR_RS16945 diaminopimelate decarboxylase — —
Azospirillum sp. SherDot2 0.44 MPMX19_05817 Argininosuccinate lyase 0.19 MPMX19_05819 Diaminopimelate decarboxylase — —
Phaeobacter inhibens DSM 17395 0.44 PGA1_c03450 argininosuccinate lyase ArgH 0.22 PGA1_c03470 diaminopimelate decarboxylase LysA — —
Acinetobacter radioresistens SK82 0.43 MPMX26_00185 Argininosuccinate lyase 0.16 MPMX26_02232 Diaminopimelate decarboxylase 0.92 10
Synechococcus elongatus PCC 7942 0.43 Synpcc7942_2475 argH argininosuccinate lyase 0.12 Synpcc7942_0262 lysA diaminopimelate decarboxylase — —
Agrobacterium fabrum C58 0.43 Atu3599 argininosuccinate lyase 0.19 Atu3601 diaminopimelate decarboxylase — —
Variovorax sp. OAS795 0.43 ABID97_RS08190 argininosuccinate lyase 0.17 ABID97_RS23305 diaminopimelate decarboxylase — —
Rhizobium sp. OAE497 0.43 ABIE40_RS17520 argininosuccinate lyase 0.19 ABIE40_RS17530 diaminopimelate decarboxylase — —
Bosea sp. OAE506 0.43 ABIE41_RS08750 argininosuccinate lyase 0.21 ABIE41_RS08740 diaminopimelate decarboxylase — —
Castellaniella sp019104865 MT123 0.43 ABCV34_RS03060 argininosuccinate lyase 0.17 ABCV34_RS12685 diaminopimelate decarboxylase — —
Sinorhizobium meliloti 1021 0.42 SMc00725 argininosuccinate lyase 0.19 SMc00723 diaminopimelate DAP decarboxylase — —
Variovorax sp. SCN45 0.42 GFF3824 Argininosuccinate lyase (EC 4.3.2.1) 0.18 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Paraburkholderia graminis OAS925 0.42 ABIE53_001311 argininosuccinate lyase 0.16 ABIE53_003749 diaminopimelate decarboxylase — —
Acidovorax sp. GW101-3H11 0.42 Ac3H11_1632 Argininosuccinate lyase (EC 4.3.2.1) 0.65 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF736 Argininosuccinate lyase (EC 4.3.2.1) 0.18 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_00194 argininosuccinate lyase 0.16 H281DRAFT_05606 diaminopimelate decarboxylase — —
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS05210 argininosuccinate lyase 0.60 BPHYT_RS35090 diaminopimelate decarboxylase — —
Dechlorosoma suillum PS 0.42 Dsui_0111 argininosuccinate lyase 0.19 Dsui_1182 diaminopimelate decarboxylase — —
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS14685 argininosuccinate lyase 0.15 HSERO_RS00950 diaminopimelate decarboxylase — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS16170 argininosuccinate lyase 0.17 ABZR87_RS02640 diaminopimelate decarboxylase 0.71 40
Ralstonia solanacearum UW163 0.41 UW163_RS09390 argininosuccinate lyase 0.17 UW163_RS06625 diaminopimelate decarboxylase — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS04280 argininosuccinate lyase 0.17 RALBFv3_RS06990 diaminopimelate decarboxylase — —
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS24970 argininosuccinate lyase 0.16 QEN71_RS28080 diaminopimelate decarboxylase 0.95 3
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS15925 argininosuccinate lyase 0.17 RR42_RS19050 diaminopimelate decarboxylase — —
Rhodospirillum rubrum S1H 0.41 Rru_A0397 Argininosuccinate lyase (NCBI) 0.20 Rru_A0396 Diaminopimelate decarboxylase (NCBI) — —
Ralstonia solanacearum GMI1000 0.41 RS_RS11865 argininosuccinate lyase 0.17 RS_RS14930 diaminopimelate decarboxylase — —
Rhodopseudomonas palustris CGA009 0.41 TX73_024645 argininosuccinate lyase 0.20 TX73_024635 diaminopimelate decarboxylase — —
Dinoroseobacter shibae DFL-12 0.41 Dshi_3062 argininosuccinate lyase (RefSeq) 0.21 Dshi_3059 diaminopimelate decarboxylase (RefSeq) — —
Ralstonia solanacearum PSI07 0.41 RPSI07_RS13080 argininosuccinate lyase 0.17 RPSI07_RS10250 diaminopimelate decarboxylase — —
Caulobacter crescentus NA1000 0.40 CCNA_02294 argininosuccinate lyase 0.21 CCNA_02296 diaminopimelate decarboxylase — —
Caulobacter crescentus NA1000 Δfur 0.40 CCNA_02294 argininosuccinate lyase 0.21 CCNA_02296 diaminopimelate decarboxylase — —
Magnetospirillum magneticum AMB-1 0.40 AMB_RS22715 argininosuccinate lyase 0.20 AMB_RS22725 diaminopimelate decarboxylase — —
Desulfovibrio vulgaris Miyazaki F 0.40 DvMF_0048 argininosuccinate lyase (RefSeq) 0.23 DvMF_1010 diaminopimelate decarboxylase (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.40 DVU1094 argH argininosuccinate lyase (TIGR) 0.23 DVU2566 lysA-2 diaminopimelate decarboxylase (TIGR) low > 55
Brevundimonas sp. GW460-12-10-14-LB2 0.38 A4249_RS12555 argininosuccinate lyase 0.20 A4249_RS12545 diaminopimelate decarboxylase 0.99 21
Bifidobacterium breve UCC2003 0.34 BBR_RS13955 argininosuccinate lyase 0.12 BBR_RS19555 diaminopimelate decarboxylase low > 34
Methanococcus maripaludis JJ 0.33 MMJJ_RS05395 argininosuccinate lyase 0.17 MMJJ_RS08170 diaminopimelate decarboxylase — —
Methanococcus maripaludis S2 0.33 MMP_RS00095 argininosuccinate lyase 0.17 MMP_RS06180 diaminopimelate decarboxylase — —
Mycobacterium tuberculosis H37Rv 0.31 Rv1659 Probable argininosuccinate lyase ArgH 0.11 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) — —
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS18485 arginosuccinate lyase (EC 4.3.2.1) (from data) 0.17 CA265_RS09650 diaminopimelate decarboxylase 0.88 44
Echinicola vietnamensis KMM 6221, DSM 17526 0.25 Echvi_3852 arginosuccinate lyase (EC 4.3.2.1) (from data) 0.23 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.91 25
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS12070 argininosuccinate lyase 0.15 ABZR88_RS10180 diaminopimelate decarboxylase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.24 CA264_06225 argininosuccinate lyase 0.18 CA264_02390 diaminopimelate decarboxylase low > 74
Bacteroides ovatus ATCC 8483 0.24 BACOVA_03551 argininosuccinate lyase 0.16 BACOVA_00215 diaminopimelate decarboxylase 0.95 13
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS07095 argininosuccinate lyase 0.16 ABI39_RS19950 diaminopimelate decarboxylase 0.64 55
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS09585 argininosuccinate lyase 0.16 HMPREF1058_RS06195 diaminopimelate decarboxylase low > 67
Bacteroides thetaiotaomicron VPI-5482 0.24 BT3733 arginosuccinate lyase (EC 4.3.2.1) (from data) 0.16 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.87 9
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS03410 argininosuccinate lyase 0.17 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.98 10
Lysobacter sp. OAE881 0.21 ABIE51_RS13380 argininosuccinate lyase 0.24 ABIE51_RS13675 diaminopimelate decarboxylase low > 62
Rhodanobacter sp. FW510-T8 0.19 OKGIIK_09430 argH argininosuccinate lyase 0.24 OKGIIK_12375 lysA diaminopimelate decarboxylase low > 52
Rhodanobacter denitrificans FW104-10B01 0.19 LRK54_RS02380 argininosuccinate lyase 0.24 LRK54_RS11485 diaminopimelate decarboxylase low > 59
Rhodanobacter denitrificans MT42 0.19 LRK55_RS02135 argininosuccinate lyase 0.24 LRK55_RS11215 diaminopimelate decarboxylase low > 63
Dyella japonica UNC79MFTsu3.2 0.19 ABZR86_RS08695 arginosuccinate lyase (EC 4.3.2.1) (from data) 0.23 ABZR86_RS12130 diaminopimelate decarboxylase low > 74

Not shown: 3 genomes with orthologs for IAI47_00920 only; 1 genomes with orthologs for IAI47_03860 only