Conservation of cofitness between HER17_RS01910 and HER17_RS04705 in Pectobacterium carotovorum WPP14

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS01910 aspartate aminotransferase family protein 1.0 HER17_RS04705 glutamate-5-semialdehyde dehydrogenase 0.78 12
Dickeya dadantii 3937 0.86 DDA3937_RS19450 aspartate aminotransferase family protein 0.83 DDA3937_RS16530 glutamate-5-semialdehyde dehydrogenase 0.71 46
Dickeya dianthicola ME23 0.86 DZA65_RS20655 aspartate aminotransferase family protein 0.81 DZA65_RS17690 glutamate-5-semialdehyde dehydrogenase 0.81 16
Dickeya dianthicola 67-19 0.86 HGI48_RS19570 aspartate aminotransferase family protein 0.86 HGI48_RS16600 glutamate-5-semialdehyde dehydrogenase 0.78 36
Serratia liquefaciens MT49 0.82 IAI46_23590 aspartate aminotransferase family protein 0.83 IAI46_04435 glutamate-5-semialdehyde dehydrogenase low > 86
Klebsiella michiganensis M5al 0.80 BWI76_RS26000 aspartate aminotransferase family protein 0.77 BWI76_RS05835 gamma-glutamyl-phosphate reductase 0.59 67
Rahnella sp. WP5 0.79 EX31_RS04630 aspartate aminotransferase family protein 0.82 EX31_RS20975 glutamate-5-semialdehyde dehydrogenase 0.87 27
Escherichia coli BW25113 0.79 b3359 argD bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase (NCBI) 0.75 b0243 proA gamma-glutamyl phosphate reductase (NCBI) low > 76
Enterobacter sp. TBS_079 0.79 MPMX20_04262 Acetylornithine/succinyldiaminopimelate aminotransferase 0.77 MPMX20_00928 Gamma-glutamyl phosphate reductase 0.61 18
Pantoea sp. MT58 0.79 IAI47_01955 aspartate aminotransferase family protein 0.76 IAI47_15115 glutamate-5-semialdehyde dehydrogenase 0.67 57
Escherichia coli BL21 0.79 ECD_03210 bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase 0.76 ECD_00240 gamma-glutamylphosphate reductase 0.52 24
Escherichia fergusonii Becca 0.79 EFB2_00463 Acetylornithine/succinyldiaminopimelate aminotransferase 0.74 EFB2_03777 Gamma-glutamyl phosphate reductase low > 86
Escherichia coli ECOR27 0.79 NOLOHH_09030 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.75 NOLOHH_02045 proA glutamate-5-semialdehyde dehydrogenase 0.69 36
Escherichia coli ECRC62 0.78 BNILDI_02490 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.75 BNILDI_00240 proA glutamate-5-semialdehyde dehydrogenase low > 75
Escherichia coli ECOR38 0.78 HEPCGN_16055 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.75 HEPCGN_07775 proA glutamate-5-semialdehyde dehydrogenase 0.67 54
Escherichia coli Nissle 1917 0.78 ECOLIN_RS19240 bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.75 ECOLIN_RS01830 glutamate-5-semialdehyde dehydrogenase low > 55
Escherichia coli ECRC98 0.78 JDDGAC_20860 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.76 JDDGAC_13295 proA glutamate-5-semialdehyde dehydrogenase low > 86
Escherichia coli ECRC99 0.78 KEDOAH_10910 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.76 KEDOAH_18485 proA glutamate-5-semialdehyde dehydrogenase
Escherichia coli ECRC102 0.78 NIAGMN_15000 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.76 NIAGMN_07530 proA glutamate-5-semialdehyde dehydrogenase
Escherichia coli ECRC101 0.78 MCAODC_07760 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.76 MCAODC_00190 proA glutamate-5-semialdehyde dehydrogenase low > 87
Escherichia coli ECRC100 0.78 OKFHMN_17230 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.76 OKFHMN_09670 proA glutamate-5-semialdehyde dehydrogenase 0.82 54
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.78 GFF3710 Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) 0.74 GFF4115 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_00343 Acetylornithine/succinyldiaminopimelate aminotransferase 0.75 OHPLBJKB_03397 Gamma-glutamyl phosphate reductase low > 73
Enterobacter asburiae PDN3 0.78 EX28DRAFT_4170 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family 0.78 EX28DRAFT_2650 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) 0.66 59
Erwinia tracheiphila SCR3 0.77 LU632_RS22810 aspartate aminotransferase family protein 0.75 LU632_RS01190 proA glutamate-5-semialdehyde dehydrogenase low > 74
Pseudomonas syringae pv. syringae B728a 0.68 Psyr_3565 succinylornithine aminotransferase apoenzyme / acetylornithine aminotransferase apoenzyme 0.42 Psyr_4369 glutamate-5-semialdehyde dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.68 Psyr_3565 succinylornithine aminotransferase apoenzyme / acetylornithine aminotransferase apoenzyme 0.42 Psyr_4369 glutamate-5-semialdehyde dehydrogenase 0.46 85
Pseudomonas sp. S08-1 0.67 OH686_21290 Succinylornithine transaminase 0.44 OH686_09340 Gamma-glutamyl phosphate reductase low > 80
Pseudomonas fluorescens FW300-N2E2 0.67 Pf6N2E2_5665 Succinylornithine transaminase (EC 2.6.1.81) 0.40 Pf6N2E2_4993 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 103
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_18725 acetylornithine aminotransferase 0.40 AO356_15290 gamma-glutamyl phosphate reductase low > 104
Pseudomonas putida KT2440 0.67 PP_4481 Succinylornithine transaminase/acetylornithine aminotransferase 0.42 PP_4811 Gamma-glutamyl phosphate reductase low > 96
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_1971 Succinylornithine transaminase (EC 2.6.1.81) 0.40 PfGW456L13_1356 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 87
Pseudomonas simiae WCS417 0.66 PS417_21710 Succinylornithine transaminase (EC 2.6.1.81) (from data) 0.43 PS417_24745 gamma-glutamyl phosphate reductase low > 88
Pseudomonas stutzeri RCH2 0.66 Psest_2719 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family 0.44 Psest_0508 gamma-glutamyl phosphate reductase 0.36 44
Pseudomonas fluorescens SBW25-INTG 0.66 PFLU_RS23315 aspartate aminotransferase family protein 0.43 PFLU_RS26675 glutamate-5-semialdehyde dehydrogenase
Pseudomonas fluorescens SBW25 0.66 PFLU_RS23315 aspartate aminotransferase family protein 0.43 PFLU_RS26675 glutamate-5-semialdehyde dehydrogenase
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_3440 Succinylornithine transaminase (EC 2.6.1.81) (from data) 0.41 Pf1N1B4_2688 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 87
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_03025 acetylornithine aminotransferase 0.41 AO353_06495 gamma-glutamyl phosphate reductase low > 101
Shewanella loihica PV-4 0.65 Shew_0578 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq) 0.57 Shew_2847 proA gamma-glutamyl phosphate reductase (RefSeq) 0.70 44
Pseudomonas sp. RS175 0.65 PFR28_03283 Succinylornithine transaminase/acetylornithine aminotransferase 0.40 PFR28_03872 Gamma-glutamyl phosphate reductase
Shewanella oneidensis MR-1 0.65 SO0617 argD acetylornithine aminotransferase (NCBI ptt file) 0.53 SO1122 proA gamma-glutamyl phosphate reductase (NCBI ptt file) 0.76 4
Alteromonas macleodii MIT1002 0.65 MIT1002_00437 Succinylornithine transaminase/acetylornithine aminotransferase 0.40 MIT1002_01885 Gamma-glutamyl phosphate reductase 0.99 9
Shewanella amazonensis SB2B 0.65 Sama_3011 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq) 0.50 Sama_2515 proA gamma-glutamyl phosphate reductase (RefSeq) 0.60 33
Shewanella sp. ANA-3 0.65 Shewana3_0610 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq) 0.54 Shewana3_0955 proA gamma-glutamyl phosphate reductase (RefSeq) 0.89 8
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_13250 aspartate aminotransferase family protein 0.62 CSW01_11570 glutamate-5-semialdehyde dehydrogenase low > 62
Kangiella aquimarina DSM 16071 0.62 B158DRAFT_2221 acetylornithine and succinylornithine transaminases/succinylornithine transaminase family 0.39 B158DRAFT_1470 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) low > 40
Paraburkholderia graminis OAS925 0.61 ABIE53_001769 succinylornithine aminotransferase 0.39 ABIE53_003523 glutamate-5-semialdehyde dehydrogenase low > 113
Burkholderia phytofirmans PsJN 0.61 BPHYT_RS07695 acetylornithine aminotransferase 0.40 BPHYT_RS16770 gamma-glutamyl phosphate reductase
Paraburkholderia sabiae LMG 24235 0.61 QEN71_RS23375 aspartate aminotransferase family protein 0.42 QEN71_RS26940 glutamate-5-semialdehyde dehydrogenase
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_06478 succinylornithine aminotransferase apoenzyme 0.40 H281DRAFT_06324 glutamate-5-semialdehyde dehydrogenase low > 103
Marinobacter adhaerens HP15 0.60 HP15_3042 acetylornithine aminotransferase (EC 2.6.1.11); succinylornithine aminotransferase (EC 2.6.1.81) (from data) 0.43 HP15_601 gamma-glutamyl phosphate reductase
Acinetobacter radioresistens SK82 0.60 MPMX26_02251 Succinylornithine transaminase 0.42 MPMX26_00417 Gamma-glutamyl phosphate reductase low > 36
Lysobacter sp. OAE881 0.48 ABIE51_RS17420 acetylornithine/succinyldiaminopimelate transaminase 0.38 ABIE51_RS13365 glutamate-5-semialdehyde dehydrogenase 0.91 7
Rhodanobacter denitrificans MT42 0.46 LRK55_RS06335 acetylornithine/succinylornithine family transaminase 0.37 LRK55_RS02125 glutamate-5-semialdehyde dehydrogenase low > 63
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS17400 acetylornithine transaminase 0.38 ABZR86_RS08680 glutamate-5-semialdehyde dehydrogenase low > 74
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_17070 astC acetylornithine transaminase 0.36 OKGIIK_09415 proA glutamate-5-semialdehyde dehydrogenase low > 52
Bosea sp. OAE506 0.44 ABIE41_RS04340 aspartate aminotransferase family protein 0.31 ABIE41_RS07580 glutamate-5-semialdehyde dehydrogenase
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.1117.1 hypothetical protein 0.39 Xcc-8004.2327.1 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 74
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS06590 acetylornithine/succinylornithine family transaminase 0.37 LRK54_RS02370 glutamate-5-semialdehyde dehydrogenase low > 59
Rhodopseudomonas palustris CGA009 0.42 TX73_024810 aspartate aminotransferase family protein 0.35 TX73_000855 glutamate-5-semialdehyde dehydrogenase
Agrobacterium fabrum C58 0.42 Atu0428 acetylornithine aminotransferase 0.35 Atu2779 gamma-glutamyl phosphate reductase
Rhizobium sp. OAE497 0.42 ABIE40_RS02320 aspartate aminotransferase family protein 0.37 ABIE40_RS18925 glutamate-5-semialdehyde dehydrogenase 0.94 9
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_00620 acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase 0.35 CCNA_03543 gamma-glutamyl phosphate reductase low > 67
Caulobacter crescentus NA1000 0.41 CCNA_00620 acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase 0.35 CCNA_03543 gamma-glutamyl phosphate reductase low > 66
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_3205 transaminase, acetylornithine/succinylornithine family 0.35 Ga0059261_2506 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) 0.97 20
Azospirillum brasilense Sp245 0.40 AZOBR_RS19025 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] (from data) 0.35 AZOBR_RS04075 gamma-glutamyl phosphate reductase
Magnetospirillum magneticum AMB-1 0.40 AMB_RS01605 aspartate aminotransferase family protein 0.38 AMB_RS20640 glutamate-5-semialdehyde dehydrogenase
Azospirillum sp. SherDot2 0.39 MPMX19_02177 Succinylornithine transaminase/acetylornithine aminotransferase 0.37 MPMX19_01943 Gamma-glutamyl phosphate reductase
Sinorhizobium meliloti 1021 0.39 SMc02138 acetylornithine transaminase 0.38 SMc03777 gamma-glutamyl phosphate reductase 0.90 27
Phaeobacter inhibens DSM 17395 0.39 PGA1_c24230 acetylornithine aminotransferase ArgD 0.35 PGA1_c15520 gamma-glutamyl phosphate reductase ProA 0.80 7
Brevundimonas sp. GW460-12-10-14-LB2 0.38 A4249_RS11925 aspartate aminotransferase family protein 0.33 A4249_RS16120 glutamate-5-semialdehyde dehydrogenase
Rhodospirillum rubrum S1H 0.38 Rru_A1147 Acetylornithine and succinylornithine aminotransferase (NCBI) 0.37 Rru_A1238 Gamma-glutamyl phosphate reductase GPR (NCBI)
Dinoroseobacter shibae DFL-12 0.36 Dshi_0798 acetylornithine and succinylornithine aminotransferase (RefSeq) 0.35 Dshi_1469 gamma-glutamyl phosphate reductase (RefSeq)
Synechococcus elongatus PCC 7942 0.35 Synpcc7942_0943 argD acetylornithine aminotransferase 0.35 Synpcc7942_2265 proA glutamate-5-semialdehyde dehydrogenase
Desulfovibrio vulgaris Hildenborough JW710 0.35 DVU2347 argD acetylornithine aminotransferase (TIGR) 0.38 DVU1953 proA gamma-glutamyl phosphate reductase (TIGR) 0.88 20
Dechlorosoma suillum PS 0.35 Dsui_0023 acetylornithine/succinylornithine aminotransferase 0.41 Dsui_1220 gamma-glutamyl phosphate reductase
Desulfovibrio vulgaris Miyazaki F 0.34 DvMF_3149 acetylornithine aminotransferase (RefSeq) 0.39 DvMF_0612 proA gamma-glutamyl phosphate reductase (RefSeq) 0.96 11
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS04665 acetylornithine transaminase 0.41 RALBFv3_RS05825 glutamate-5-semialdehyde dehydrogenase
Ralstonia solanacearum UW163 0.34 UW163_RS09005 acetylornithine transaminase 0.41 UW163_RS07800 glutamate-5-semialdehyde dehydrogenase
Mycobacterium tuberculosis H37Rv 0.34 Rv1655 Probable acetylornithine aminotransferase ArgD 0.43 Rv2427c Probable gamma-glutamyl phosphate reductase protein ProA (GPR) (glutamate-5-semialdehyde dehydrogenase) (glutamyl-gamma-semialdehyde dehydrogenase)
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS00285 acetylornithine transaminase 0.42 ABZR87_RS01395 glutamate-5-semialdehyde dehydrogenase low > 80
Castellaniella sp019104865 MT123 0.33 ABCV34_RS12095 acetylornithine transaminase 0.41 ABCV34_RS00845 glutamate-5-semialdehyde dehydrogenase
Herbaspirillum seropedicae SmR1 0.33 HSERO_RS16670 acetylornithine aminotransferase 0.41 HSERO_RS02965 gamma-glutamyl phosphate reductase
Ralstonia solanacearum PSI07 0.33 RPSI07_RS12720 acetylornithine transaminase 0.40 RPSI07_RS11475 glutamate-5-semialdehyde dehydrogenase
Acidovorax sp. GW101-3H11 0.33 Ac3H11_1332 Acetylornithine aminotransferase (EC 2.6.1.11) 0.40 Ac3H11_704 Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS16955 acetylornithine aminotransferase 0.37 RR42_RS17530 gamma-glutamyl phosphate reductase
Ralstonia solanacearum GMI1000 0.32 RS_RS12225 aspartate aminotransferase family protein 0.42 RS_RS13715 gamma-glutamyl-phosphate reductase
Variovorax sp. OAS795 0.31 ABID97_RS08635 aspartate aminotransferase family protein 0.39 ABID97_RS04600 glutamate-5-semialdehyde dehydrogenase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF3420 Acetylornithine aminotransferase (EC 2.6.1.11) 0.39 GFF2641 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) 0.75 6
Variovorax sp. SCN45 0.31 GFF3927 N-acetylornithine aminotransferase (EC 2.6.1.11) 0.40 GFF6326 Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
Parabacteroides merdae CL09T00C40 0.29 HMPREF1078_RS12615 ornithine--oxo-acid transaminase 0.36 HMPREF1078_RS10655 glutamate-5-semialdehyde dehydrogenase low > 61
Bifidobacterium breve UCC2003 0.29 BBR_RS13900 acetylornithine transaminase 0.43 BBR_RS14075 glutamate-5-semialdehyde dehydrogenase low > 34
Bacteroides stercoris CC31F 0.28 HMPREF1181_RS03445 aspartate aminotransferase family protein 0.39 HMPREF1181_RS03320 glutamate-5-semialdehyde dehydrogenase 0.96 14
Bacteroides thetaiotaomicron VPI-5482 0.28 BT3758 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) 0.37 BT3718 gamma-glutamyl phosphate reductase (NCBI ptt file) 0.79 30
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS02965 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme 0.35 ABI39_RS02875 glutamate-5-semialdehyde dehydrogenase 0.66 50
Bacteroides ovatus ATCC 8483 0.27 BACOVA_03588 aminotransferase, class III 0.38 BACOVA_03534 glutamate-5-semialdehyde dehydrogenase 0.97 6
Phocaeicola vulgatus CL09T03C04 0.27 HMPREF1058_RS15260 ornithine--oxo-acid transaminase 0.36 HMPREF1058_RS08645 glutamate-5-semialdehyde dehydrogenase low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS15500 aspartate aminotransferase family protein 0.36 ABZR88_RS22165 glutamate-5-semialdehyde dehydrogenase
Pontibacter actiniarum KMM 6156, DSM 19842 0.25 CA264_15645 ornithine--oxo-acid transaminase 0.39 CA264_07720 gamma-glutamyl-phosphate reductase 0.39 60

Not shown: 2 genomes with orthologs for HER17_RS01910 only; 2 genomes with orthologs for HER17_RS04705 only