Conservation of cofitness between PS417_24625 and PS417_04435 in Pseudomonas simiae WCS417

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase 1.0 PS417_04435 uracil phosphoribosyltransferase 0.23 18
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.98 PFLU_RS04485 uracil phosphoribosyltransferase low > 109
Pseudomonas fluorescens SBW25 0.99 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.98 PFLU_RS04485 uracil phosphoribosyltransferase low > 109
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase 0.95 AO353_14855 uracil phosphoribosyltransferase low > 101
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase 0.94 Pf6N2E2_5235 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 103
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase 0.94 PfGW456L13_1597 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 87
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase 0.93 Pf1N1B4_2934 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 87
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase 0.93 AO356_16565 uracil phosphoribosyltransferase low > 104
Pseudomonas sp. RS175 0.97 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.93 PFR28_03641 Uracil phosphoribosyltransferase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.94 Psyr_0969 uracil phosphoribosyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.94 Psyr_0969 uracil phosphoribosyltransferase low > 86
Pseudomonas stutzeri RCH2 0.83 Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.90 Psest_1120 uracil phosphoribosyltransferase low > 67
Pseudomonas sp. S08-1 0.83 OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.92 OH686_17985 uracil phosphoribosyltransferase low > 80
Marinobacter adhaerens HP15 0.73 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.79 HP15_2306 uracil phosphoribosyltransferase low > 73
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.69 ABZR86_RS09615 uracil phosphoribosyltransferase low > 74
Pectobacterium carotovorum WPP14 0.68 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.72 HER17_RS15460 uracil phosphoribosyltransferase low > 75
Dickeya dadantii 3937 0.67 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.72 DDA3937_RS06030 uracil phosphoribosyltransferase low > 74
Escherichia coli BL21 0.67 ECD_00629 tRNA-i(6)A37 methylthiotransferase 0.73 ECD_02390 uracil phosphoribosyltransferase low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF4579 tRNA-i(6)A37 methylthiotransferase 0.73 GFF2171 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 78
Dickeya dianthicola 67-19 0.67 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.73 HGI48_RS06075 uracil phosphoribosyltransferase low > 71
Dickeya dianthicola ME23 0.67 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.72 DZA65_RS06425 uracil phosphoribosyltransferase low > 75
Escherichia coli ECRC101 0.67 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.73 MCAODC_12345 upp uracil phosphoribosyltransferase — —
Escherichia coli ECOR38 0.67 HEPCGN_01005 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.73 HEPCGN_20980 upp uracil phosphoribosyltransferase low > 85
Escherichia fergusonii Becca 0.67 EFB2_03438 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.73 EFB2_01400 Uracil phosphoribosyltransferase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.73 OHPLBJKB_01228 Uracil phosphoribosyltransferase low > 73
Escherichia coli ECRC99 0.67 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.73 KEDOAH_06405 upp uracil phosphoribosyltransferase — —
Escherichia coli BW25113 0.67 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) 0.73 b2498 upp uracil phosphoribosyltransferase (VIMSS) low > 76
Escherichia coli ECOR27 0.67 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.73 NOLOHH_13465 upp uracil phosphoribosyltransferase low > 57
Escherichia coli ECRC102 0.67 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.73 NIAGMN_19585 upp uracil phosphoribosyltransferase — —
Escherichia coli ECRC101 0.67 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.73 OKFHMN_21815 upp uracil phosphoribosyltransferase — —
Escherichia coli ECRC98 0.67 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.73 JDDGAC_25760 upp uracil phosphoribosyltransferase — —
Pantoea sp. MT58 0.67 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.72 IAI47_05185 uracil phosphoribosyltransferase low > 76
Escherichia coli ECRC62 0.67 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.73 BNILDI_12275 upp uracil phosphoribosyltransferase — —
Escherichia coli Nissle 1917 0.67 ECOLIN_RS03555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.73 ECOLIN_RS14185 uracil phosphoribosyltransferase — —
Rhodanobacter denitrificans MT42 0.67 LRK55_RS13465 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.70 LRK55_RS02920 uracil phosphoribosyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.70 LRK54_RS03170 uracil phosphoribosyltransferase low > 59
Erwinia tracheiphila SCR3 0.67 LU632_RS16305 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.71 LU632_RS08280 upp uracil phosphoribosyltransferase low > 74
Shewanella sp. ANA-3 0.66 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.70 Shewana3_2544 upp uracil phosphoribosyltransferase (RefSeq) 0.59 30
Shewanella amazonensis SB2B 0.66 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) 0.73 Sama_2096 upp uracil phosphoribosyltransferase (RefSeq) low > 62
Klebsiella michiganensis M5al 0.66 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.74 BWI76_RS20945 uracil phosphoribosyltransferase — —
Shewanella oneidensis MR-1 0.66 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) 0.70 SO2759 upp uracil phosphoribosyltransferase (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.66 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.67 MIT1002_02893 Uracil phosphoribosyltransferase low > 70
Xanthomonas campestris pv. campestris strain 8004 0.66 Xcc-8004.2224.1 tRNA-i(6)A37 methylthiotransferase 0.64 Xcc-8004.2160.1 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 74
Lysobacter sp. OAE881 0.66 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.65 ABIE51_RS15050 uracil phosphoribosyltransferase low > 62
Serratia liquefaciens MT49 0.66 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.73 IAI46_18880 uracil phosphoribosyltransferase low > 86
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_02990 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.68 OKGIIK_10040 upp uracil phosphoribosyltransferase low > 52
Enterobacter asburiae PDN3 0.65 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.74 EX28DRAFT_0170 uracil phosphoribosyltransferase (EC 2.4.2.9) low > 76
Shewanella loihica PV-4 0.65 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.70 Shew_1514 upp uracil phosphoribosyltransferase (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.65 CSW01_04915 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.70 CSW01_11345 uracil phosphoribosyltransferase low > 62
Enterobacter sp. TBS_079 0.65 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.74 MPMX20_03352 Uracil phosphoribosyltransferase low > 85
Dechlorosoma suillum PS 0.64 Dsui_1194 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.69 Dsui_2333 uracil phosphoribosyltransferase 0.50 23
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS02195 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.48 QEN71_RS24390 uracil phosphoribosyltransferase low > 153
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS16535 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.47 BPHYT_RS06415 uracil phosphoribosyltransferase low > 109
Rahnella sp. WP5 0.64 EX31_RS23205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.71 EX31_RS22700 uracil phosphoribosyltransferase low > 89
Castellaniella sp019104865 MT123 0.64 ABCV34_RS15345 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.82 ABCV34_RS15380 uracil phosphoribosyltransferase low > 48
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS07780 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.47 ABZR87_RS15395 uracil phosphoribosyltransferase low > 80
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_04239 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.46 H281DRAFT_04523 uracil phosphoribosyltransferase low > 103
Ralstonia solanacearum GMI1000 0.63 RS_RS02645 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.49 RS_RS10980 uracil phosphoribosyltransferase low > 80
Ralstonia solanacearum PSI07 0.63 RPSI07_RS21380 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.48 RPSI07_RS13695 uracil phosphoribosyltransferase low > 81
Ralstonia solanacearum UW163 0.63 UW163_RS01760 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.48 UW163_RS10140 uracil phosphoribosyltransferase — —
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS11825 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.48 RALBFv3_RS03530 uracil phosphoribosyltransferase low > 76
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS02855 dimethylallyladenosine tRNA methylthiotransferase 0.51 RR42_RS30815 uracil phosphoribosyltransferase low > 128
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS03615 (dimethylallyl)adenosine tRNA methylthiotransferase 0.46 HSERO_RS03500 uracil phosphoribosyltransferase low > 78
Acinetobacter radioresistens SK82 0.61 MPMX26_02667 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.78 MPMX26_02542 Uracil phosphoribosyltransferase 0.56 29
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF613 tRNA-i(6)A37 methylthiotransferase 0.51 GFF1179 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 90
Acidovorax sp. GW101-3H11 0.60 Ac3H11_4008 tRNA-i(6)A37 methylthiotransferase 0.51 Ac3H11_2428 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 79
Variovorax sp. OAS795 0.60 ABID97_RS06475 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.50 ABID97_RS16850 uracil phosphoribosyltransferase low > 91
Variovorax sp. SCN45 0.59 GFF7320 tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) 0.50 GFF324 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 127
Azospirillum sp. SherDot2 0.46 MPMX19_02511 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.47 MPMX19_02205 Uracil phosphoribosyltransferase low > 112
Bosea sp. OAE506 0.46 ABIE41_RS04495 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.53 ABIE41_RS22700 uracil phosphoribosyltransferase low > 77
Dinoroseobacter shibae DFL-12 0.46 Dshi_1019 RNA modification enzyme, MiaB family (RefSeq) 0.53 Dshi_0831 uracil phosphoribosyltransferase (RefSeq) low > 64
Azospirillum brasilense Sp245 0.44 AZOBR_RS01475 (dimethylallyl)adenosine tRNA methylthiotransferase 0.47 AZOBR_RS03150 uracil phosphoribosyltransferase low > 97
Rhodospirillum rubrum S1H 0.44 Rru_A3770 tRNA-i(6)A37 modification enzyme MiaB (NCBI) 0.45 Rru_A2255 Uracil phosphoribosyl transferase (NCBI) low > 58
Sinorhizobium meliloti 1021 0.44 SMc01115 (dimethylallyl)adenosine tRNA methylthiotransferase 0.51 SMc04121 uracil phosphoribosyltransferase low > 103
Caulobacter crescentus NA1000 Δfur 0.44 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.50 CCNA_02351 uracil phosphoribosyltransferase low > 67
Phaeobacter inhibens DSM 17395 0.44 PGA1_c04710 (dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.50 PGA1_c11960 uracil phosphoribosyltransferase Upp low > 62
Caulobacter crescentus NA1000 0.44 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.50 CCNA_02351 uracil phosphoribosyltransferase low > 66
Agrobacterium fabrum C58 0.43 Atu0356 miaB protein 0.50 Atu0135 uracil phosphoribosyltransferase low > 89
Rhizobium sp. OAE497 0.42 ABIE40_RS01705 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.50 ABIE40_RS00825 uracil phosphoribosyltransferase low > 107
Mycobacterium tuberculosis H37Rv 0.37 Rv2733c Conserved hypothetical alanine, arginine-rich protein 0.38 Rv3309c Probable uracil phosphoribosyltransferase Upp (UMP pyrophosphorylase) (uprtase) (UMP diphosphorylase) low > 58
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_2374 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.37 Synpcc7942_1715 upp uracil phosphoribosyltransferase — —
Bifidobacterium breve UCC2003 0.35 BBR_RS16570 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.38 BBR_RS19680 uracil phosphoribosyltransferase low > 34
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3195 conserved hypothetical protein (NCBI ptt file) 0.23 BT2791 uracil phosphoribosyltransferase (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS01770 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.22 HMPREF1181_RS01165 uracil phosphoribosyltransferase low > 56
Bacteroides ovatus ATCC 8483 0.33 BACOVA_02895 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.23 BACOVA_02012 putative uracil phosphoribosyltransferase low > 94
Fusobacterium nucleatum SB010 0.33 HUW76_07655 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.52 HUW76_07615 uracil phosphoribosyltransferase low > 35
Mucilaginibacter yixingensis YX-36 DSM 26809 0.32 ABZR88_RS18330 MiaB/RimO family radical SAM methylthiotransferase 0.20 ABZR88_RS00770 uracil phosphoribosyltransferase low > 71
Desulfovibrio vulgaris Hildenborough JW710 0.32 DVU0984 miaB tRNA-i(6)A37 modification enzyme MiaB (TIGR) 0.63 DVU1025 upp uracil phosphoribosyltransferase (TIGR) — —
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS17135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.23 HMPREF1078_RS00655 uracil phosphoribosyltransferase low > 61
Pontibacter actiniarum KMM 6156, DSM 19842 0.32 CA264_05315 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.24 CA264_14760 uracil phosphoribosyltransferase low > 74
Phocaeicola vulgatus CL09T03C04 0.31 HMPREF1058_RS11280 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.23 HMPREF1058_RS10070 uracil phosphoribosyltransferase low > 67
Phocaeicola dorei CL03T12C01 0.31 ABI39_RS05650 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.23 ABI39_RS06680 uracil phosphoribosyltransferase low > 72
Desulfovibrio vulgaris Miyazaki F 0.31 DvMF_1330 RNA modification enzyme, MiaB family (RefSeq) 0.65 DvMF_0911 uracil phosphoribosyltransferase (RefSeq) low > 51
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_2376 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.23 Echvi_0597 Uracil phosphoribosyltransferase low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.31 CA265_RS21675 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.21 CA265_RS19460 uracil phosphoribosyltransferase low > 88
Methanococcus maripaludis JJ 0.21 MMJJ_RS03110 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase 0.25 MMJJ_RS01490 uracil phosphoribosyltransferase low > 28
Methanococcus maripaludis S2 0.21 MMP_RS02195 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase 0.25 MMP_RS03565 uracil phosphoribosyltransferase low > 25

Not shown: 5 genomes with orthologs for PS417_24625 only; 2 genomes with orthologs for PS417_04435 only