Conservation of cofitness between GFF651 and GFF613 in Hydrogenophaga sp. GW460-11-11-14-LB1

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF651 Aspartate carbamoyltransferase (EC 2.1.3.2) 1.0 GFF613 tRNA-i(6)A37 methylthiotransferase 0.66 16
Variovorax sp. OAS795 0.90 ABID97_RS24660 aspartate carbamoyltransferase catalytic subunit 0.81 ABID97_RS06475 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 91
Variovorax sp. SCN45 0.89 GFF2160 Aspartate carbamoyltransferase (EC 2.1.3.2) 0.81 GFF7320 tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) low > 127
Acidovorax sp. GW101-3H11 0.89 Ac3H11_3978 Aspartate carbamoyltransferase (EC 2.1.3.2) 0.84 Ac3H11_4008 tRNA-i(6)A37 methylthiotransferase — —
Cupriavidus basilensis FW507-4G11 0.82 RR42_RS15860 aspartate carbamoyltransferase catalytic subunit 0.76 RR42_RS02855 dimethylallyladenosine tRNA methylthiotransferase — —
Ralstonia solanacearum GMI1000 0.82 RS_RS03410 aspartate carbamoyltransferase 0.74 RS_RS02645 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Ralstonia solanacearum PSI07 0.82 RPSI07_RS20635 aspartate carbamoyltransferase catalytic subunit 0.75 RPSI07_RS21380 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Paraburkholderia bryophila 376MFSha3.1 0.81 H281DRAFT_04817 aspartate carbamoyltransferase 0.74 H281DRAFT_04239 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 103
Ralstonia solanacearum UW163 0.81 UW163_RS00940 aspartate carbamoyltransferase catalytic subunit 0.73 UW163_RS01760 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Ralstonia solanacearum IBSBF1503 0.81 RALBFv3_RS12625 aspartate carbamoyltransferase catalytic subunit 0.73 RALBFv3_RS11825 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Ralstonia sp. UNC404CL21Col 0.81 ABZR87_RS08625 aspartate carbamoyltransferase catalytic subunit 0.75 ABZR87_RS07780 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 80
Burkholderia phytofirmans PsJN 0.81 BPHYT_RS04235 aspartate carbamoyltransferase 0.74 BPHYT_RS16535 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 109
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS25780 aspartate carbamoyltransferase catalytic subunit 0.75 QEN71_RS02195 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 153
Herbaspirillum seropedicae SmR1 0.80 HSERO_RS02330 aspartate carbamoyltransferase 0.74 HSERO_RS03615 (dimethylallyl)adenosine tRNA methylthiotransferase low > 78
Dechlorosoma suillum PS 0.76 Dsui_0596 aspartate carbamoyltransferase 0.71 Dsui_1194 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB — —
Pseudomonas stutzeri RCH2 0.66 Psest_0291 aspartate carbamoyltransferase 0.59 Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB — —
Pseudomonas sp. S08-1 0.66 OH686_10940 aspartate carbamoyltransferase 0.60 OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB — —
Pseudomonas simiae WCS417 0.65 PS417_26700 aspartate carbamoyltransferase catalytic subunit 0.60 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase — —
Pseudomonas fluorescens GW456-L13 0.65 PfGW456L13_1016 Aspartate carbamoyltransferase (EC 2.1.3.2) 0.60 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase — —
Pseudomonas fluorescens SBW25 0.65 PFLU_RS28345 aspartate carbamoyltransferase 0.60 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS28345 aspartate carbamoyltransferase 0.60 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_13450 aspartate carbamoyltransferase catalytic subunit 0.60 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase — —
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_08135 aspartate carbamoyltransferase catalytic subunit 0.60 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase — —
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_4606 Aspartate carbamoyltransferase (EC 2.1.3.2) 0.60 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase — —
Pseudomonas fluorescens FW300-N1B4 0.65 Pf1N1B4_2347 Aspartate carbamoyltransferase (EC 2.1.3.2) 0.60 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.65 Psyr_0482 aspartate carbamoyltransferase 0.60 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB — —
Pseudomonas syringae pv. syringae B728a 0.65 Psyr_0482 aspartate carbamoyltransferase 0.60 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB — —
Pseudomonas sp. RS175 0.65 PFR28_04237 Aspartate carbamoyltransferase 0.60 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase — —
Marinobacter adhaerens HP15 0.62 HP15_3507 aspartate carbamoyltransferase 0.60 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 73
Acinetobacter radioresistens SK82 0.59 MPMX26_01099 Aspartate carbamoyltransferase 0.55 MPMX26_02667 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 36
Sinorhizobium meliloti 1021 0.49 SMc01360 aspartate carbamoyltransferase catalytic subunit 0.44 SMc01115 (dimethylallyl)adenosine tRNA methylthiotransferase low > 103
Rhodospirillum rubrum S1H 0.49 Rru_A3190 Aspartate carbamoyltransferase (NCBI) 0.42 Rru_A3770 tRNA-i(6)A37 modification enzyme MiaB (NCBI) low > 58
Rhizobium sp. OAE497 0.47 ABIE40_RS07385 aspartate carbamoyltransferase catalytic subunit 0.45 ABIE40_RS01705 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Agrobacterium fabrum C58 0.47 Atu1308 aspartate carbamoyl transferase catalytic subunit 0.45 Atu0356 miaB protein low > 89
Magnetospirillum magneticum AMB-1 0.47 AMB_RS18300 aspartate carbamoyltransferase 0.45 AMB_RS22585 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase — —
Azospirillum sp. SherDot2 0.47 MPMX19_01054 Aspartate carbamoyltransferase 0.44 MPMX19_02511 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 112
Bosea sp. OAE506 0.46 ABIE41_RS17230 aspartate carbamoyltransferase catalytic subunit 0.43 ABIE41_RS04495 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 77
Azospirillum brasilense Sp245 0.46 AZOBR_RS20575 aspartate carbamoyltransferase 0.43 AZOBR_RS01475 (dimethylallyl)adenosine tRNA methylthiotransferase low > 97
Xanthomonas campestris pv. campestris strain 8004 0.46 Xcc-8004.1722.1 Aspartate carbamoyltransferase (EC 2.1.3.2) 0.64 Xcc-8004.2224.1 tRNA-i(6)A37 methylthiotransferase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.46 A4249_RS04260 aspartate carbamoyltransferase catalytic subunit 0.42 A4249_RS14720 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Lysobacter sp. OAE881 0.45 ABIE51_RS16015 aspartate carbamoyltransferase catalytic subunit 0.65 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 62
Rhodopseudomonas palustris CGA009 0.45 TX73_016120 aspartate carbamoyltransferase catalytic subunit 0.40 TX73_002325 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS04220 aspartate carbamoyltransferase catalytic subunit 0.65 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Rhodanobacter denitrificans MT42 0.44 LRK55_RS03990 aspartate carbamoyltransferase catalytic subunit 0.65 LRK55_RS13465 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_11095 pyrB aspartate carbamoyltransferase catalytic subunit 0.65 OKGIIK_02990 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Dinoroseobacter shibae DFL-12 0.44 Dshi_3091 aspartate carbamoyltransferase (RefSeq) 0.45 Dshi_1019 RNA modification enzyme, MiaB family (RefSeq) low > 64
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS10390 aspartate carbamoyltransferase catalytic subunit 0.65 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Caulobacter crescentus NA1000 0.43 CCNA_02525 aspartate carbamoyltransferase 0.44 CCNA_00054 tRNA 2-methylthioadenosine synthase low > 66
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_4661 aspartate carbamoyltransferase 0.31 Echvi_2376 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB — —
Caulobacter crescentus NA1000 Δfur 0.43 CCNA_02525 aspartate carbamoyltransferase 0.44 CCNA_00054 tRNA 2-methylthioadenosine synthase low > 67
Phaeobacter inhibens DSM 17395 0.43 PGA1_c03060 aspartate carbamoyltransferase PyrB 0.42 PGA1_c04710 (dimethylallyl)adenosine tRNA methylthiotransferase MiaB low > 62
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS03460 aspartate carbamoyltransferase catalytic subunit 0.30 ABZR88_RS18330 MiaB/RimO family radical SAM methylthiotransferase — —
Pedobacter sp. GW460-11-11-14-LB5 0.43 CA265_RS14660 aspartate carbamoyltransferase 0.28 CA265_RS21675 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Desulfovibrio vulgaris Hildenborough JW710 0.43 DVU2901 pyrB aspartate carbamoyltransferase (TIGR) 0.36 DVU0984 miaB tRNA-i(6)A37 modification enzyme MiaB (TIGR) — —
Sphingomonas koreensis DSMZ 15582 0.42 Ga0059261_0076 aspartate carbamoyltransferase (EC 2.1.3.2) 0.40 Ga0059261_1604 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB — —
Desulfovibrio vulgaris Miyazaki F 0.41 DvMF_1425 pyrB aspartate carbamoyltransferase catalytic subunit (RefSeq) 0.33 DvMF_1330 RNA modification enzyme, MiaB family (RefSeq) low > 51
Pontibacter actiniarum KMM 6156, DSM 19842 0.41 CA264_20465 aspartate carbamoyltransferase 0.32 CA264_05315 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Mycobacterium tuberculosis H37Rv 0.40 Rv1380 Probable aspartate carbamoyltransferase PyrB (ATCase) (aspartate transcarbamylase) 0.34 Rv2733c Conserved hypothetical alanine, arginine-rich protein — —
Synechococcus elongatus PCC 7942 0.39 Synpcc7942_0670 pyrB aspartate carbamoyltransferase catalytic subunit 0.37 Synpcc7942_2374 tRNA-i(6)A37 thiotransferase enzyme MiaB — —
Fusobacterium nucleatum SB010 0.27 HUW76_08765 aspartate carbamoyltransferase catalytic subunit 0.33 HUW76_07655 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 35
Methanococcus maripaludis S2 0.23 MMP_RS08545 aspartate carbamoyltransferase 0.15 MMP_RS02195 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.22 GFF930 Aspartate carbamoyltransferase (EC 2.1.3.2) 0.60 GFF4579 tRNA-i(6)A37 methylthiotransferase low > 78
Escherichia coli ECOR27 0.21 NOLOHH_04125 pyrB aspartate carbamoyltransferase 0.60 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 57
Escherichia coli ECRC101 0.21 MCAODC_02370 pyrB aspartate carbamoyltransferase 0.60 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Escherichia coli ECRC99 0.21 KEDOAH_16290 pyrB aspartate carbamoyltransferase 0.60 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Enterobacter asburiae PDN3 0.21 EX28DRAFT_3446 aspartate carbamoyltransferase (EC 2.1.3.2) 0.59 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB — —
Escherichia coli ECOR38 0.21 HEPCGN_10060 pyrB aspartate carbamoyltransferase 0.60 HEPCGN_01005 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 85
Escherichia coli BW25113 0.21 b4245 pyrB aspartate carbamoyltransferase catalytic subunit (NCBI) 0.60 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) low > 76
Escherichia coli BL21 0.21 ECD_04113 aspartate carbamoyltransferase, catalytic subunit 0.60 ECD_00629 tRNA-i(6)A37 methylthiotransferase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.21 OHPLBJKB_03789 Aspartate carbamoyltransferase catalytic subunit 0.60 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 73
Escherichia coli Nissle 1917 0.21 ECOLIN_RS24625 aspartate carbamoyltransferase 0.60 ECOLIN_RS03555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Bacteroides ovatus ATCC 8483 0.21 BACOVA_02450 aspartate carbamoyltransferase 0.35 BACOVA_02895 tRNA-i(6)A37 thiotransferase enzyme MiaB — —
Escherichia fergusonii Becca 0.21 EFB2_04288 Aspartate carbamoyltransferase catalytic subunit 0.60 EFB2_03438 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 86
Escherichia coli ECRC62 0.21 BNILDI_07385 pyrB aspartate carbamoyltransferase 0.60 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Vibrio cholerae E7946 ATCC 55056 0.21 CSW01_12725 aspartate carbamoyltransferase 0.60 CSW01_04915 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 62
Escherichia coli ECRC101 0.21 OKFHMN_11865 pyrB aspartate carbamoyltransferase 0.60 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Bacteroides thetaiotaomicron VPI-5482 0.21 BT0742 aspartate carbamoyltransferase catalytic chain (NCBI ptt file) 0.35 BT3195 conserved hypothetical protein (NCBI ptt file) — —
Escherichia coli ECRC102 0.21 NIAGMN_09715 pyrB aspartate carbamoyltransferase 0.60 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Escherichia coli ECRC98 0.21 JDDGAC_15505 pyrB aspartate carbamoyltransferase 0.60 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Kangiella aquimarina DSM 16071 0.20 B158DRAFT_0021 aspartate carbamoyltransferase (EC 2.1.3.2) 0.62 B158DRAFT_0099 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB — —
Pantoea sp. MT58 0.20 IAI47_16860 aspartate carbamoyltransferase 0.60 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 76
Enterobacter sp. TBS_079 0.20 MPMX20_00544 Aspartate carbamoyltransferase catalytic subunit 0.58 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 85
Parabacteroides merdae CL09T00C40 0.20 HMPREF1078_RS01350 aspartate carbamoyltransferase 0.32 HMPREF1078_RS17135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Phocaeicola vulgatus CL09T03C04 0.20 HMPREF1058_RS03820 aspartate carbamoyltransferase 0.34 HMPREF1058_RS11280 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Bacteroides stercoris CC31F 0.20 HMPREF1181_RS14990 aspartate carbamoyltransferase 0.35 HMPREF1181_RS01770 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 56
Dickeya dadantii 3937 0.20 DDA3937_RS01925 aspartate carbamoyltransferase 0.59 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Dickeya dianthicola ME23 0.20 DZA65_RS01970 aspartate carbamoyltransferase 0.59 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Klebsiella michiganensis M5al 0.20 BWI76_RS02995 aspartate carbamoyltransferase 0.60 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Dickeya dianthicola 67-19 0.20 HGI48_RS01900 aspartate carbamoyltransferase 0.59 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 71
Serratia liquefaciens MT49 0.20 IAI46_02275 aspartate carbamoyltransferase 0.61 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 86
Phocaeicola dorei CL03T12C01 0.20 ABI39_RS17400 aspartate carbamoyltransferase 0.34 ABI39_RS05650 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Bifidobacterium breve UCC2003 0.20 BBR_RS15425 aspartate carbamoyltransferase 0.33 BBR_RS16570 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 34
Erwinia tracheiphila SCR3 0.20 LU632_RS20950 pyrB aspartate carbamoyltransferase 0.59 LU632_RS16305 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Pectobacterium carotovorum WPP14 0.19 HER17_RS19510 aspartate carbamoyltransferase 0.59 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Rahnella sp. WP5 0.19 EX31_RS12785 aspartate carbamoyltransferase 0.60 EX31_RS23205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 89
Shewanella oneidensis MR-1 0.19 SO1301 pyrB aspartate carbamoyltransferase (NCBI ptt file) 0.60 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.19 MIT1002_00423 Aspartate carbamoyltransferase catalytic chain 0.61 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB low > 70
Shewanella sp. ANA-3 0.19 Shewana3_3070 aspartate carbamoyltransferase (RefSeq) 0.60 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) low > 73
Shewanella loihica PV-4 0.18 Shew_1013 aspartate carbamoyltransferase (RefSeq) 0.59 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) low > 60
Shewanella amazonensis SB2B 0.18 Sama_0840 aspartate carbamoyltransferase (RefSeq) 0.61 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) low > 62

Not shown: 3 genomes with orthologs for GFF651 only; 1 genomes with orthologs for GFF613 only