Conservation of cofitness between PS417_02485 and PS417_26760 in Pseudomonas simiae WCS417

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_02485 tRNA delta(2)-isopentenylpyrophosphate transferase 1.0 PS417_26760 oxidase 0.34 12
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.98 PFLU_RS28405 radical SAM family heme chaperone HemW low > 109
Pseudomonas fluorescens SBW25 0.98 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.98 PFLU_RS28405 radical SAM family heme chaperone HemW low > 109
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_13140 tRNA dimethylallyltransferase 0.93 AO353_08200 coproporphyrinogen III oxidase 0.46 34
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_155 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.91 PfGW456L13_1003 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB 0.46 14
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_1413 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.92 Pf1N1B4_2334 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_08660 tRNA dimethylallyltransferase 0.88 AO356_13390 coproporphyrinogen III oxidase low > 104
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_3615 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.86 Pf6N2E2_4593 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB
Pseudomonas sp. RS175 0.86 PFR28_05120 tRNA dimethylallyltransferase 0.87 PFR28_04249 Heme chaperone HemW low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_0571 tRNA isopentenyltransferase 0.79 Psyr_0471 coproporphyrinogen III oxidase, anaerobic low > 86
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_0571 tRNA isopentenyltransferase 0.79 Psyr_0471 coproporphyrinogen III oxidase, anaerobic low > 86
Pseudomonas putida KT2440 0.77 PP_4895 tRNA dimethylallyltransferase 0.74 PP_5101 coproporphyrinogen/heterocyclic compound oxidase (aerobic) 0.31 55
Pseudomonas stutzeri RCH2 0.75 Psest_0682 tRNA dimethylallyltransferase 0.72 Psest_0276 putative oxygen-independent coproporphyrinogen III oxidase
Pseudomonas sp. S08-1 0.73 OH686_09475 tRNA dimethylallyltransferase 0.74 OH686_11020 Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_03871 tRNA dimethylallyltransferase 0.52 OHPLBJKB_00761 Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR
Escherichia coli BW25113 0.59 b4171 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) 0.52 b2955 yggW coproporphyrinogen III oxidase (NCBI) low > 76
Klebsiella michiganensis M5al 0.59 BWI76_RS02530 tRNA dimethylallyltransferase 0.52 BWI76_RS24120 YggW family oxidoreductase low > 92
Escherichia coli BL21 0.59 ECD_04038 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase 0.52 ECD_02785 HemN family putative oxidoreductase low > 60
Escherichia coli ECOR27 0.59 NOLOHH_04525 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.51 NOLOHH_11105 hemW radical SAM family heme chaperone HemW
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_01830 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.52 CSW01_02425 YggW family oxidoreductase low > 62
Escherichia coli ECOR38 0.59 HEPCGN_10490 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.52 HEPCGN_18540 hemW radical SAM family heme chaperone HemW low > 85
Escherichia coli ECRC62 0.59 BNILDI_06965 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.51 BNILDI_09685 hemW radical SAM family heme chaperone HemW
Escherichia fergusonii Becca 0.59 EFB2_04364 tRNA dimethylallyltransferase 0.52 EFB2_00947 Heme chaperone HemW low > 86
Escherichia coli ECRC99 0.59 KEDOAH_15895 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.52 KEDOAH_08905 hemW radical SAM family heme chaperone HemW
Escherichia coli ECRC101 0.59 MCAODC_02775 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.52 MCAODC_09755 hemW radical SAM family heme chaperone HemW
Escherichia coli ECRC101 0.59 OKFHMN_12260 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.52 OKFHMN_19235 hemW radical SAM family heme chaperone HemW
Escherichia coli ECRC98 0.59 JDDGAC_15900 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.52 JDDGAC_22865 hemW radical SAM family heme chaperone HemW
Escherichia coli ECRC102 0.59 NIAGMN_10110 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.52 NIAGMN_17000 hemW radical SAM family heme chaperone HemW
Escherichia coli Nissle 1917 0.59 ECOLIN_RS24225 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.51 ECOLIN_RS16435 radical SAM family heme chaperone HemW low > 52
Enterobacter asburiae PDN3 0.59 EX28DRAFT_3368 tRNA dimethylallyltransferase 0.51 EX28DRAFT_2993 putative oxygen-independent coproporphyrinogen III oxidase low > 76
Dickeya dadantii 3937 0.58 DDA3937_RS18615 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.50 DDA3937_RS17325 radical SAM family heme chaperone HemW low > 74
Enterobacter sp. TBS_079 0.58 MPMX20_00452 tRNA dimethylallyltransferase 0.52 MPMX20_03813 Heme chaperone HemW low > 85
Dickeya dianthicola ME23 0.58 DZA65_RS19685 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.51 DZA65_RS18460 radical SAM family heme chaperone HemW low > 75
Rahnella sp. WP5 0.58 EX31_RS08825 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.52 EX31_RS02710 radical SAM family heme chaperone HemW low > 89
Dickeya dianthicola 67-19 0.58 HGI48_RS18550 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.51 HGI48_RS17370 radical SAM family heme chaperone HemW low > 71
Shewanella oneidensis MR-1 0.58 SO0602 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) 0.53 SO3359 oxygen-independent coproporphyrinogen III oxidase, putative (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.58 HER17_RS02580 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.53 HER17_RS03785 radical SAM family heme chaperone HemW low > 75
Shewanella loihica PV-4 0.57 Shew_0565 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.52 Shew_1131 putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF824 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.52 GFF3058 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB low > 78
Serratia liquefaciens MT49 0.57 IAI46_01620 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.54 IAI46_21435 radical SAM family heme chaperone HemW low > 86
Pantoea sp. MT58 0.57 IAI47_02585 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.52 IAI47_03580 radical SAM family heme chaperone HemW 0.30 15
Marinobacter adhaerens HP15 0.56 HP15_2500 tRNA delta(2)-isopentenylpyrophosphate transferase 0.47 HP15_280 putative oxygen-independent coproporphyrinogen III oxidase
Shewanella amazonensis SB2B 0.56 Sama_3026 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.53 Sama_2483 oxygen-independent coproporphyrinogen III oxidase, putative (RefSeq)
Shewanella sp. ANA-3 0.56 Shewana3_0596 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.54 Shewana3_1188 putative oxygen-independent coproporphyrinogen III oxidase (RefSeq)
Alteromonas macleodii MIT1002 0.56 MIT1002_03789 tRNA dimethylallyltransferase 0.49 MIT1002_00939 Oxygen-independent coproporphyrinogen-III oxidase 1
Erwinia tracheiphila SCR3 0.54 LU632_RS02050 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.51 LU632_RS05445 hemW radical SAM family heme chaperone HemW low > 74
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_1951 tRNA dimethylallyltransferase 0.55 B158DRAFT_0201 coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22) low > 40
Dechlorosoma suillum PS 0.53 Dsui_1552 tRNA isopentenyltransferase MiaA 0.49 Dsui_0491 putative oxygen-independent coproporphyrinogen III oxidase
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_06625 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.47 OKGIIK_12160 hemW radical SAM family heme chaperone HemW
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS08370 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.49 ABZR86_RS11910 radical SAM family heme chaperone HemW
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS04185 tRNA delta(2)-isopentenylpyrophosphate transferase 0.50 HSERO_RS10665 coproporphyrinogen III oxidase
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS00635 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.50 LRK54_RS11735 radical SAM family heme chaperone HemW low > 59
Rhodanobacter denitrificans MT42 0.51 LRK55_RS00405 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.50 LRK55_RS11460 radical SAM family heme chaperone HemW
Ralstonia solanacearum GMI1000 0.51 RS_RS12855 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.47 RS_RS10840 oxygen-independent coproporphyrinogen III oxidase-like protein low > 80
Paraburkholderia graminis OAS925 0.51 ABIE53_000875 tRNA dimethylallyltransferase 0.48 ABIE53_003236 putative oxygen-independent coproporphyrinogen III oxidase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_04711 tRNA dimethylallyltransferase 0.47 H281DRAFT_04010 oxygen-independent coproporphyrinogen-3 oxidase
Ralstonia solanacearum PSI07 0.51 RPSI07_RS12065 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.48 RPSI07_RS13830 oxygen-independent coproporphyrinogen III oxidase-like protein low > 81
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS26440 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.48 QEN71_RS03635 radical SAM family heme chaperone HemW
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS00875 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 ABZR87_RS15265 radical SAM family heme chaperone HemW low > 80
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS05235 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 RALBFv3_RS03355 oxygen-independent coproporphyrinogen III oxidase-like protein low > 76
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS17210 tRNA delta(2)-isopentenylpyrophosphate transferase 0.50 RR42_RS04880 coproporphyrinogen III oxidase
Ralstonia solanacearum UW163 0.49 UW163_RS08390 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.46 UW163_RS10365 oxygen-independent coproporphyrinogen III oxidase-like protein
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS03645 tRNA dimethylallyltransferase 0.47 BPHYT_RS15335 coproporphyrinogen III oxidase low > 109
Castellaniella sp019104865 MT123 0.48 ABCV34_RS08790 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.45 ABCV34_RS03525 radical SAM family heme chaperone HemW
Lysobacter sp. OAE881 0.47 ABIE51_RS06535 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.49 ABIE51_RS17300 radical SAM family heme chaperone HemW low > 62
Variovorax sp. OAS795 0.46 ABID97_RS20320 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.47 ABID97_RS23630 radical SAM family heme chaperone HemW
Acidovorax sp. GW101-3H11 0.46 Ac3H11_319 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.44 Ac3H11_3672 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB low > 79
Variovorax sp. SCN45 0.46 GFF4798 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.46 GFF2383 Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.3121.1 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.48 Xcc-8004.1224.1 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB
Acinetobacter radioresistens SK82 0.43 MPMX26_01208 tRNA dimethylallyltransferase 0.46 MPMX26_00308 Heme chaperone HemW
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF5491 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.46 GFF3256 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB low > 90
Synechococcus elongatus PCC 7942 0.30 Synpcc7942_2490 miaA tRNA delta(2)-isopentenylpyrophosphate transferase 0.26 Synpcc7942_2382 hemN coproporphyrinogen III oxidase low > 38
Sinorhizobium meliloti 1021 0.28 SMc01435 tRNA delta(2)-isopentenylpyrophosphate transferase 0.28 SMc01147 coproporphyrinogen III oxidase
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS17470 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.21 ABZR88_RS03545 radical SAM family heme chaperone HemW
Rhizobium sp. OAE497 0.27 ABIE40_RS11505 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.29 ABIE40_RS01625 radical SAM family heme chaperone HemW
Rhodopseudomonas palustris CGA009 0.26 TX73_010460 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.28 TX73_001700 radical SAM family heme chaperone HemW
Fusobacterium nucleatum SB010 0.26 HUW76_01190 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.25 HUW76_07285 radical SAM family heme chaperone HemW low > 35
Agrobacterium fabrum C58 0.26 Atu2039 tRNA delta(2)-isopentenylpyrophosphate 0.28 Atu0325 oxygen-independent coproporphyrinogen III oxidase
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS02960 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.22 CA265_RS18155 coproporphyrinogen III oxidase 0.49 82
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_12070 tRNA dimethylallyltransferase 0.24 CA264_16765 coproporphyrinogen III oxidase low > 74
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_0069 tRNA dimethylallyltransferase 0.27 Ga0059261_2753 putative oxygen-independent coproporphyrinogen III oxidase low > 68
Caulobacter crescentus NA1000 Δfur 0.25 CCNA_02183 tRNA delta(2)-isopentenylpyrophosphate transferase 0.25 CCNA_00144 oxygen-independent coproporphyrinogen-III oxidase
Caulobacter crescentus NA1000 0.25 CCNA_02183 tRNA delta(2)-isopentenylpyrophosphate transferase 0.25 CCNA_00144 oxygen-independent coproporphyrinogen-III oxidase
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_0174 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.24 DvMF_2374 oxygen-independent coproporphyrinogen III oxidase (RefSeq)
Bifidobacterium breve UCC2003 0.24 BBR_RS16565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.21 BBR_RS15235 coproporphyrinogen III oxidase
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_2323 tRNA dimethylallyltransferase 0.24 Echvi_0628 putative oxygen-independent coproporphyrinogen III oxidase
Bosea sp. OAE506 0.23 ABIE41_RS12880 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.27 ABIE41_RS03305 radical SAM family heme chaperone HemW low > 77
Bacteroides thetaiotaomicron VPI-5482 0.23 BT4203 tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) 0.22 BT2168 coproporphyrinogen III oxidase (NCBI ptt file)
Azospirillum brasilense Sp245 0.23 AZOBR_RS06550 tRNA delta(2)-isopentenylpyrophosphate transferase 0.32 AZOBR_RS02195 coproporphyrinogen III oxidase
Mycobacterium tuberculosis H37Rv 0.23 Rv2727c Probable tRNA delta(2)-isopentenylpyrophosphate transferase MiaA (IPP transferase) (isopentenyl-diphosphate:tRNA isopentenyltransferase) (iptase) (IPPT) 0.22 Rv2388c Probable oxygen-independent coproporphyrinogen III oxidase HemN (coproporphyrinogenase) (coprogen oxidase)
Azospirillum sp. SherDot2 0.22 MPMX19_01778 tRNA dimethylallyltransferase 0.30 MPMX19_02574 Heme chaperone HemW
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS00520 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.23 ABI39_RS00100 radical SAM family heme chaperone HemW low > 72
Bacteroides stercoris CC31F 0.22 HMPREF1181_RS06385 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.21 HMPREF1181_RS06440 radical SAM family heme chaperone HemW low > 56
Phocaeicola vulgatus CL09T03C04 0.22 HMPREF1058_RS08065 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.23 HMPREF1058_RS07680 radical SAM family heme chaperone HemW 0.60 17
Magnetospirillum magneticum AMB-1 0.21 AMB_RS17735 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.26 AMB_RS22770 radical SAM protein low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS05030 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.25 A4249_RS12445 radical SAM family heme chaperone HemW
Parabacteroides merdae CL09T00C40 0.21 HMPREF1078_RS13930 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.25 HMPREF1078_RS11035 radical SAM family heme chaperone HemW low > 61
Rhodospirillum rubrum S1H 0.19 Rru_A0466 tRNA isopentenyltransferase (NCBI) 0.29 Rru_A3639 Putative oxygen-independent coproporphyrinogen III oxidase (NCBI)
Phaeobacter inhibens DSM 17395 0.18 PGA1_c14200 tRNA delta(2)-isopentenylpyrophosphate transferase MiaA 0.30 PGA1_c35050 oxygen-independent coproporphyrinogen III oxidase HemN
Dinoroseobacter shibae DFL-12 0.17 Dshi_1492 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.29 Dshi_3460 putative oxygen-independent coproporphyrinogen III oxidase (RefSeq)

Not shown: 2 genomes with orthologs for PS417_02485 only; 0 genomes with orthologs for PS417_26760 only