Conservation of cofitness between PS417_24305 and PS417_25395 in Pseudomonas simiae WCS417

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_24305 DNA repair protein RadA 1.0 PS417_25395 excinuclease ABC subunit A 0.56 1
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS26230 DNA repair protein RadA 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA 0.19 61
Pseudomonas fluorescens SBW25 1.00 PFLU_RS26230 DNA repair protein RadA 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA low > 109
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_15680 DNA repair protein RadA 0.97 AO356_14785 ABC-ATPase UvrA 0.74 4
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_5076 DNA repair protein RadA 0.97 Pf6N2E2_4888 Excinuclease ABC subunit A 0.44 5
Pseudomonas sp. RS175 0.98 PFR28_03792 DNA repair protein RadA 0.97 PFR28_03974 UvrABC system protein A low > 88
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_2768 DNA repair protein RadA 0.98 Pf1N1B4_2611 Excinuclease ABC subunit A 0.47 1
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_13980 DNA repair protein RadA 0.98 AO353_06855 ABC-ATPase UvrA 0.65 2
Pseudomonas fluorescens GW456-L13 0.96 PfGW456L13_1442 DNA repair protein RadA 0.98 PfGW456L13_1283 Excinuclease ABC subunit A 0.30 36
Pseudomonas syringae pv. syringae B728a ΔmexB 0.96 Psyr_4275 DNA replication and repair protein RadA 0.95 Psyr_4520 Excinuclease ABC subunit A low > 86
Pseudomonas syringae pv. syringae B728a 0.96 Psyr_4275 DNA replication and repair protein RadA 0.95 Psyr_4520 Excinuclease ABC subunit A low > 86
Pseudomonas putida KT2440 0.94 PP_4644 DNA repair enzyme 0.93 PP_0483 excinuclease (uvrABC system protein A) — —
Pseudomonas sp. S08-1 0.94 OH686_16185 DNA repair protein RadA 0.92 OH686_15495 excinuclease ABC subunit A low > 80
Pseudomonas stutzeri RCH2 0.91 Psest_3401 DNA repair protein RadA 0.90 Psest_3576 excinuclease ABC, A subunit 0.62 2
Kangiella aquimarina DSM 16071 0.67 B158DRAFT_0877 DNA replication and repair protein RadA 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.52 26
Acinetobacter radioresistens SK82 0.67 MPMX26_02235 DNA repair protein RadA 0.69 MPMX26_02892 UvrABC system protein A 0.28 35
Alteromonas macleodii MIT1002 0.67 MIT1002_02706 Lon protease 2 0.76 MIT1002_00179 Excinuclease ABC subunit A low > 70
Xanthomonas campestris pv. campestris strain 8004 0.66 Xcc-8004.3812.1 DNA repair protein RadA 0.72 Xcc-8004.3830.1 Excinuclease ABC subunit A low > 74
Shewanella sp. ANA-3 0.65 Shewana3_1049 DNA repair protein RadA (RefSeq) 0.75 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.52 7
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_03672 DNA repair protein RadA 0.77 OHPLBJKB_03983 UvrABC system protein A low > 73
Escherichia coli Nissle 1917 0.65 ECOLIN_RS25190 DNA repair protein RadA 0.77 ECOLIN_RS23485 excinuclease ABC subunit UvrA low > 52
Escherichia coli BL21 0.65 ECD_04265 DNA repair protein 0.77 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.83 3
Escherichia fergusonii Becca 0.65 EFB2_04057 DNA repair protein RadA 0.77 EFB2_04533 UvrABC system protein A low > 86
Escherichia coli BW25113 0.65 b4389 radA predicted repair protein (NCBI) 0.77 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.45 12
Shewanella oneidensis MR-1 0.65 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.75 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.55 7
Escherichia coli ECRC101 0.64 MCAODC_01710 radA DNA repair protein RadA 0.77 MCAODC_03405 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli ECRC99 0.64 KEDOAH_16960 radA DNA repair protein RadA 0.77 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli ECOR27 0.64 NOLOHH_03520 radA DNA repair protein RadA 0.77 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA low > 57
Escherichia coli ECRC98 0.64 JDDGAC_14790 radA DNA repair protein RadA 0.77 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli ECRC62 0.64 BNILDI_08075 radA DNA repair protein RadA 0.77 BNILDI_06380 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli ECRC101 0.64 OKFHMN_11195 radA DNA repair protein RadA 0.77 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli ECRC102 0.64 NIAGMN_09045 radA DNA repair protein RadA 0.77 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA — —
Rhodanobacter denitrificans MT42 0.64 LRK55_RS02280 DNA repair protein RadA 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA low > 63
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS02525 DNA repair protein RadA 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA low > 59
Escherichia coli ECOR38 0.64 HEPCGN_09195 radA DNA repair protein RadA 0.77 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA low > 85
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_09580 radA DNA repair protein RadA 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF1057 DNA repair protein RadA 0.77 GFF1429 Excinuclease ABC subunit A low > 78
Enterobacter sp. TBS_079 0.64 MPMX20_00694 DNA repair protein RadA 0.76 MPMX20_00276 UvrABC system protein A low > 85
Enterobacter asburiae PDN3 0.64 EX28DRAFT_3597 DNA repair protein RadA 0.76 EX28DRAFT_4246 excinuclease ABC, A subunit low > 76
Serratia liquefaciens MT49 0.63 IAI46_02945 DNA repair protein RadA 0.76 IAI46_22905 excinuclease ABC subunit UvrA 0.43 11
Klebsiella michiganensis M5al 0.63 BWI76_RS04165 DNA repair protein RadA 0.76 BWI76_RS01950 excinuclease ABC subunit A low > 92
Erwinia tracheiphila SCR3 0.63 LU632_RS02550 radA DNA repair protein RadA 0.75 LU632_RS23685 uvrA excinuclease ABC subunit UvrA low > 74
Dyella japonica UNC79MFTsu3.2 0.63 ABZR86_RS08845 DNA repair protein RadA 0.72 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.77 16
Pantoea sp. MT58 0.63 IAI47_16345 DNA repair protein RadA 0.76 IAI47_17815 excinuclease ABC subunit UvrA low > 76
Rahnella sp. WP5 0.63 EX31_RS04030 DNA repair protein RadA 0.77 EX31_RS11990 excinuclease ABC subunit UvrA low > 89
Marinobacter adhaerens HP15 0.62 HP15_487 DNA repair protein RadA 0.77 HP15_406 excinuclease ABC, ATPase subunit (A) 0.87 3
Vibrio cholerae E7946 ATCC 55056 0.62 CSW01_11870 DNA repair protein RadA 0.76 CSW01_02080 UvrABC system protein A low > 62
Dickeya dianthicola ME23 0.62 DZA65_RS02485 DNA repair protein RadA 0.77 DZA65_RS18735 excinuclease ABC subunit UvrA low > 75
Pectobacterium carotovorum WPP14 0.62 HER17_RS19085 DNA repair protein RadA 0.76 HER17_RS03550 excinuclease ABC subunit UvrA low > 75
Dickeya dianthicola 67-19 0.61 HGI48_RS02380 DNA repair protein RadA 0.77 HGI48_RS17610 excinuclease ABC subunit UvrA low > 71
Dickeya dadantii 3937 0.61 DDA3937_RS02420 DNA repair protein RadA 0.77 DDA3937_RS17605 excinuclease ABC subunit UvrA low > 74
Shewanella amazonensis SB2B 0.61 Sama_0981 DNA repair protein RadA (RefSeq) 0.75 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.65 6
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS06320 DNA repair protein RadA 0.69 QEN71_RS01825 excinuclease ABC subunit UvrA low > 153
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_00590 DNA replication and repair protein RadA 0.69 H281DRAFT_01913 Excinuclease ABC subunit A low > 103
Paraburkholderia graminis OAS925 0.59 ABIE53_002526 DNA repair protein RadA/Sms 0.69 ABIE53_000732 excinuclease ABC subunit A low > 113
Variovorax sp. OAS795 0.59 ABID97_RS03770 DNA repair protein RadA 0.66 ABID97_RS04340 excinuclease ABC subunit UvrA low > 91
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS12235 DNA repair protein RadA 0.69 BPHYT_RS02970 excinuclease ABC subunit A low > 109
Herbaspirillum seropedicae SmR1 0.59 HSERO_RS10745 DNA repair protein RadA 0.70 HSERO_RS19810 excinuclease ABC subunit A 0.57 3
Variovorax sp. SCN45 0.59 GFF5087 DNA repair protein RadA 0.66 GFF4944 Excinuclease ABC subunit A low > 127
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS12030 DNA repair protein RadA 0.69 RR42_RS02145 excinuclease ABC subunit A — —
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS11670 DNA repair protein RadA 0.70 ABZR87_RS07120 excinuclease ABC subunit UvrA low > 80
Ralstonia solanacearum UW163 0.58 UW163_RS13540 DNA repair protein RadA 0.70 UW163_RS02345 excinuclease ABC subunit UvrA — —
Ralstonia solanacearum IBSBF1503 0.58 RALBFv3_RS00210 DNA repair protein RadA 0.70 RALBFv3_RS11235 excinuclease ABC subunit UvrA low > 76
Ralstonia solanacearum GMI1000 0.58 RS_RS06880 DNA repair protein RadA 0.70 RS_RS02080 excinuclease ABC subunit UvrA low > 80
Ralstonia solanacearum PSI07 0.57 RPSI07_RS17270 DNA repair protein RadA 0.70 RPSI07_RS22065 excinuclease ABC subunit UvrA low > 81
Acidovorax sp. GW101-3H11 0.57 Ac3H11_3371 DNA repair protein RadA 0.65 Ac3H11_4387 Excinuclease ABC subunit A 0.43 68
Dechlorosoma suillum PS 0.57 Dsui_2413 DNA repair protein RadA 0.74 Dsui_1622 excinuclease ABC, A subunit low > 51
Castellaniella sp019104865 MT123 0.56 ABCV34_RS02345 DNA repair protein RadA 0.62 ABCV34_RS12715 excinuclease ABC subunit UvrA low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF1833 DNA repair protein RadA 0.66 GFF2755 Excinuclease ABC subunit A low > 90
Dinoroseobacter shibae DFL-12 0.46 Dshi_2129 DNA repair protein RadA (RefSeq) 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.72 2
Azospirillum brasilense Sp245 0.46 AZOBR_RS08320 DNA repair protein RadA 0.60 AZOBR_RS15370 excinuclease ABC subunit A 0.79 4
Magnetospirillum magneticum AMB-1 0.45 AMB_RS10555 DNA repair protein RadA 0.60 AMB_RS12410 excinuclease ABC subunit UvrA low > 64
Agrobacterium fabrum C58 0.45 Atu1077 DNA repair protein 0.60 Atu1513 ABC excinuclease subunit A 0.44 9
Sinorhizobium meliloti 1021 0.45 SMc00556 DNA repair protein RadA 0.59 SMc01235 excinuclease ABC subunit A 0.68 2
Azospirillum sp. SherDot2 0.45 MPMX19_00904 DNA repair protein RadA 0.61 MPMX19_01152 UvrABC system protein A 0.51 14
Rhizobium sp. OAE497 0.45 ABIE40_RS06280 DNA repair protein RadA 0.60 ABIE40_RS09360 excinuclease ABC subunit UvrA low > 107
Phaeobacter inhibens DSM 17395 0.45 PGA1_c10840 DNA repair protein RadA 0.58 PGA1_c17370 uvrABC system protein A 0.53 3
Rhodopseudomonas palustris CGA009 0.45 TX73_015980 DNA repair protein RadA 0.61 TX73_014580 excinuclease ABC subunit UvrA 0.42 56
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS00075 DNA repair protein RadA 0.49 HMPREF1181_RS15185 excinuclease ABC subunit UvrA low > 56
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_1031 DNA repair protein RadA 0.51 Echvi_1138 excinuclease ABC, A subunit 0.48 30
Parabacteroides merdae CL09T00C40 0.44 HMPREF1078_RS08395 DNA repair protein RadA 0.50 HMPREF1078_RS00835 excinuclease ABC subunit UvrA low > 61
Bosea sp. OAE506 0.44 ABIE41_RS17800 DNA repair protein RadA 0.59 ABIE41_RS15100 excinuclease ABC subunit UvrA 0.51 20
Bacteroides thetaiotaomicron VPI-5482 0.43 BT2406 putative DNA repair protein (NCBI ptt file) 0.51 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.53 28
Bacteroides ovatus ATCC 8483 0.43 BACOVA_03019 DNA repair protein RadA 0.51 BACOVA_03703 excinuclease ABC, A subunit low > 94
Phocaeicola dorei CL03T12C01 0.43 ABI39_RS10420 DNA repair protein RadA 0.50 ABI39_RS15330 excinuclease ABC subunit UvrA low > 72
Phocaeicola vulgatus CL09T03C04 0.43 HMPREF1058_RS14715 DNA repair protein RadA 0.50 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.48 20
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS20495 DNA repair protein RadA 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA low > 71
Pontibacter actiniarum KMM 6156, DSM 19842 0.42 CA264_17125 DNA repair protein RadA 0.50 CA264_18100 ABC-ATPase UvrA low > 74
Rhodospirillum rubrum S1H 0.42 Rru_A0406 DNA repair protein RadA (NCBI) 0.62 Rru_A1752 Excinuclease ABC, A subunit (NCBI) low > 58
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS22660 DNA repair protein RadA 0.49 CA265_RS25080 excinuclease ABC subunit A 0.38 80
Sphingomonas koreensis DSMZ 15582 0.42 Ga0059261_0751 DNA repair protein RadA 0.60 Ga0059261_0674 excinuclease ABC, A subunit 0.36 15
Synechococcus elongatus PCC 7942 0.42 Synpcc7942_1452 radA DNA repair protein RadA 0.54 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.66 25
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_01732 DNA repair protein RadA 0.60 CCNA_02673 excinuclease ABC subunit A low > 67
Caulobacter crescentus NA1000 0.41 CCNA_01732 DNA repair protein RadA 0.60 CCNA_02673 excinuclease ABC subunit A 0.77 5
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS03745 DNA repair protein RadA 0.62 A4249_RS08575 excinuclease ABC subunit UvrA low > 48
Shewanella loihica PV-4 0.39 Shew_2807 DNA repair protein RadA (RefSeq) 0.75 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.94 1
Bifidobacterium breve UCC2003 0.38 BBR_RS18740 DNA repair protein RadA 0.54 BBR_RS15510 excinuclease ABC subunit UvrA low > 34
Desulfovibrio vulgaris Miyazaki F 0.36 DvMF_0471 DNA repair protein RadA (RefSeq) 0.45 DvMF_3050 excinuclease ABC, A subunit (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.36 DVU1590 radA DNA repair protein RadA (TIGR) 0.47 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) low > 55
Fusobacterium nucleatum SB010 0.35 HUW76_02270 DNA repair protein RadA 0.54 HUW76_06660 excinuclease ABC subunit UvrA low > 35
Mycobacterium tuberculosis H37Rv 0.34 Rv3585 DNA repair protein RadA (DNA repair protein SMS) 0.55 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA low > 58

Not shown: 1 genomes with orthologs for PS417_24305 only; 2 genomes with orthologs for PS417_25395 only