| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_03830 | | protein disaggregation chaperone | 1.0 | PS417_22895 | | tyrosine recombinase XerD | 0.48 | 18 |
| Pseudomonas fluorescens SBW25-INTG | 0.99 | PFLU_RS03880 | | ATP-dependent chaperone ClpB | 0.99 | PFLU_RS24560 | | site-specific tyrosine recombinase XerD | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.99 | PFLU_RS03880 | | ATP-dependent chaperone ClpB | 0.99 | PFLU_RS24560 | | site-specific tyrosine recombinase XerD | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.97 | AO356_15935 | | ATP-dependent chaperone ClpB | 0.97 | AO356_06385 | | recombinase XerD | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.97 | Pf6N2E2_5129 | | ClpB protein | 0.96 | Pf6N2E2_3145 | | Tyrosine recombinase XerD | — | — |
| Pseudomonas sp. RS175 | 0.97 | PFR28_03746 | | Chaperone protein ClpB | 0.95 | PFR28_00331 | | Tyrosine recombinase XerD | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.96 | PfGW456L13_1495 | | ClpB protein | 0.97 | PfGW456L13_1721 | | Tyrosine recombinase XerD | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.96 | Pf1N1B4_2824 | | ClpB protein | 0.97 | Pf1N1B4_3011 | | Tyrosine recombinase XerD | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.95 | AO353_14230 | | ATP-dependent chaperone ClpB | 0.97 | AO353_04365 | | recombinase XerD | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.95 | Psyr_0728 | | AAA ATPase, central region:Clp, N terminal:Clp, N terminal | 0.93 | Psyr_1286 | | tyrosine recombinase XerD subunit | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.95 | Psyr_0728 | | AAA ATPase, central region:Clp, N terminal:Clp, N terminal | 0.93 | Psyr_1286 | | tyrosine recombinase XerD subunit | low | > 86 |
| Pseudomonas putida KT2440 | 0.93 | PP_0625 | | Chaperone protein ClpB | 0.90 | PP_1468 | | Tyrosine recombinase XerD | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.90 | Psest_0711 | | ATP-dependent chaperone ClpB | 0.82 | Psest_3129 | | tyrosine recombinase XerD | low | > 67 |
| Pseudomonas sp. S08-1 | 0.89 | OH686_16420 | | ATP-dependent chaperone protein ClpB | 0.84 | OH686_17750 | | tyrosine recombinase XerD | low | > 80 |
| Marinobacter adhaerens HP15 | 0.75 | HP15_529 | | protein disaggregation chaperone | 0.60 | HP15_762 | | site-specific tyrosine recombinase XerD | low | > 73 |
| Lysobacter sp. OAE881 | 0.72 | ABIE51_RS04925 | | ATP-dependent chaperone ClpB | 0.56 | ABIE51_RS04495 | | site-specific tyrosine recombinase XerD | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.71 | CSW01_03705 | | chaperone protein ClpB | 0.59 | CSW01_12250 | | site-specific tyrosine recombinase XerD | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.71 | MIT1002_02677 | | Heat shock protein F84.1 | 0.54 | MIT1002_00786 | | Tyrosine recombinase XerD | low | > 70 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.71 | Xcc-8004.1382.1 | | ClpB protein | 0.49 | Xcc-8004.4441.1 | | Tyrosine recombinase XerD | low | > 74 |
| Kangiella aquimarina DSM 16071 | 0.70 | B158DRAFT_2535 | | ATP-dependent chaperone ClpB | 0.61 | B158DRAFT_2265 | | tyrosine recombinase XerD | low | > 40 |
| Enterobacter sp. TBS_079 | 0.70 | MPMX20_03461 | | Chaperone protein ClpB | 0.56 | MPMX20_03753 | | Tyrosine recombinase XerD | low | > 85 |
| Erwinia tracheiphila SCR3 | 0.70 | LU632_RS16935 | clpB | ATP-dependent chaperone ClpB | 0.56 | LU632_RS05975 | xerD | site-specific tyrosine recombinase XerD | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.70 | GFF4184 | | ClpB protein | 0.57 | GFF2991 | | Tyrosine recombinase XerD | low | > 78 |
| Pantoea sp. MT58 | 0.70 | IAI47_04435 | | ATP-dependent chaperone ClpB | 0.57 | IAI47_03820 | | site-specific tyrosine recombinase XerD | low | > 76 |
| Escherichia coli ECRC101 | 0.70 | MCAODC_11795 | clpB | ATP-dependent chaperone ClpB | 0.57 | MCAODC_10090 | xerD | site-specific tyrosine recombinase XerD | — | — |
| Escherichia coli BW25113 | 0.70 | b2592 | clpB | protein disaggregation chaperone (NCBI) | 0.57 | b2894 | xerD | site-specific tyrosine recombinase XerD (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.70 | ECOLIN_RS14665 | | ATP-dependent chaperone ClpB | 0.57 | ECOLIN_RS16125 | | site-specific tyrosine recombinase XerD | — | — |
| Escherichia coli ECRC98 | 0.70 | JDDGAC_24930 | clpB | ATP-dependent chaperone ClpB | 0.57 | JDDGAC_23210 | xerD | site-specific tyrosine recombinase XerD | — | — |
| Escherichia coli ECRC99 | 0.70 | KEDOAH_06955 | clpB | ATP-dependent chaperone ClpB | 0.57 | KEDOAH_08570 | xerD | site-specific tyrosine recombinase XerD | — | — |
| Escherichia coli ECRC101 | 0.70 | OKFHMN_21265 | clpB | ATP-dependent chaperone ClpB | 0.57 | OKFHMN_19570 | xerD | site-specific tyrosine recombinase XerD | — | — |
| Escherichia coli ECRC62 | 0.70 | BNILDI_11745 | clpB | ATP-dependent chaperone ClpB | 0.57 | BNILDI_10025 | xerD | site-specific tyrosine recombinase XerD | — | — |
| Escherichia coli ECOR38 | 0.70 | HEPCGN_20390 | clpB | ATP-dependent chaperone ClpB | 0.57 | HEPCGN_18860 | xerD | site-specific tyrosine recombinase XerD | low | > 85 |
| Escherichia coli ECRC102 | 0.70 | NIAGMN_19035 | clpB | ATP-dependent chaperone ClpB | 0.57 | NIAGMN_17335 | xerD | site-specific tyrosine recombinase XerD | — | — |
| Escherichia fergusonii Becca | 0.70 | EFB2_01298 | | Chaperone protein ClpB | 0.57 | EFB2_01007 | | Tyrosine recombinase XerD | low | > 86 |
| Escherichia coli ECOR27 | 0.70 | NOLOHH_12940 | clpB | ATP-dependent chaperone ClpB | 0.57 | NOLOHH_11495 | xerD | site-specific tyrosine recombinase XerD | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.70 | OHPLBJKB_01114 | | Chaperone protein ClpB | 0.57 | OHPLBJKB_00821 | | Tyrosine recombinase XerD | low | > 73 |
| Escherichia coli BL21 | 0.70 | ECD_02482 | | protein disaggregation chaperone | 0.57 | ECD_02726 | | site-specific tyrosine recombinase | low | > 60 |
| Shewanella amazonensis SB2B | 0.70 | Sama_2603 | | clpB protein (RefSeq) | 0.55 | Sama_2739 | | integrase/recombinase XerD (RefSeq) | low | > 62 |
| Klebsiella michiganensis M5al | 0.70 | BWI76_RS21440 | | ATP-dependent chaperone ClpB | 0.57 | BWI76_RS23815 | | site-specific tyrosine recombinase XerD | — | — |
| Enterobacter asburiae PDN3 | 0.70 | EX28DRAFT_2693 | | ATP-dependent chaperone ClpB | 0.56 | EX28DRAFT_2945 | | tyrosine recombinase XerD | 0.57 | 33 |
| Shewanella oneidensis MR-1 | 0.70 | SO3577 | clpB | clpB protein (NCBI ptt file) | 0.61 | SO0950 | xerD | integrase/recombinase XerD (NCBI ptt file) | 0.53 | 6 |
| Shewanella sp. ANA-3 | 0.70 | Shewana3_3169 | | ATPase (RefSeq) | 0.61 | Shewana3_3331 | | tyrosine recombinase XerD (RefSeq) | low | > 73 |
| Rhodanobacter sp. FW510-T8 | 0.70 | OKGIIK_01800 | clpB | ATP-dependent chaperone ClpB | 0.45 | OKGIIK_11520 | xerD | site-specific tyrosine recombinase XerD | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.70 | ABZR86_RS10940 | | ATP-dependent chaperone ClpB | 0.46 | ABZR86_RS19225 | | site-specific tyrosine recombinase XerD | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.70 | HER17_RS05410 | | ATP-dependent chaperone ClpB | 0.57 | HER17_RS17890 | | site-specific tyrosine recombinase XerD | low | > 75 |
| Shewanella loihica PV-4 | 0.70 | Shew_2948 | | ATPase (RefSeq) | 0.60 | Shew_0770 | | tyrosine recombinase XerD (RefSeq) | low | > 60 |
| Rhodanobacter denitrificans MT42 | 0.70 | LRK55_RS04735 | | ATP-dependent chaperone ClpB | 0.45 | LRK55_RS04515 | | site-specific tyrosine recombinase XerD | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.69 | LRK54_RS04955 | | ATP-dependent chaperone ClpB | 0.45 | LRK54_RS04735 | | site-specific tyrosine recombinase XerD | low | > 59 |
| Dickeya dianthicola ME23 | 0.69 | DZA65_RS17320 | | ATP-dependent chaperone ClpB | 0.57 | DZA65_RS03485 | | site-specific tyrosine recombinase XerD | — | — |
| Dickeya dianthicola 67-19 | 0.69 | HGI48_RS16225 | | ATP-dependent chaperone ClpB | 0.57 | HGI48_RS03440 | | site-specific tyrosine recombinase XerD | low | > 71 |
| Rahnella sp. WP5 | 0.69 | EX31_RS07560 | | ATP-dependent chaperone ClpB | 0.56 | EX31_RS13480 | | site-specific tyrosine recombinase XerD | low | > 89 |
| Dickeya dadantii 3937 | 0.69 | DDA3937_RS16100 | | ATP-dependent chaperone ClpB | 0.58 | DDA3937_RS03300 | | site-specific tyrosine recombinase XerD | low | > 74 |
| Serratia liquefaciens MT49 | 0.69 | IAI46_03995 | | ATP-dependent chaperone ClpB | 0.58 | IAI46_20730 | | site-specific tyrosine recombinase XerD | low | > 86 |
| Paraburkholderia sabiae LMG 24235 | 0.68 | QEN71_RS22370 | | ATP-dependent chaperone ClpB | 0.52 | QEN71_RS02755 | | site-specific tyrosine recombinase XerD | — | — |
| Paraburkholderia graminis OAS925 | 0.67 | ABIE53_002033 | | ATP-dependent Clp protease ATP-binding subunit ClpB | 0.53 | ABIE53_003361 | | integrase/recombinase XerD | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.67 | H281DRAFT_00817 | | ATP-dependent Clp protease ATP-binding subunit ClpB | 0.55 | H281DRAFT_04126 | | integrase/recombinase XerD | — | — |
| Burkholderia phytofirmans PsJN | 0.67 | BPHYT_RS08990 | | protein disaggregation chaperone | 0.54 | BPHYT_RS15950 | | tyrosine recombinase XerD | low | > 109 |
| Acinetobacter radioresistens SK82 | 0.66 | MPMX26_01096 | | Chaperone protein ClpB | 0.50 | MPMX26_00169 | | Tyrosine recombinase XerD | — | — |
| Dechlorosoma suillum PS | 0.66 | Dsui_2161 | | ATP-dependent chaperone ClpB | 0.54 | Dsui_1217 | | tyrosine recombinase XerD | low | > 51 |
| Ralstonia solanacearum IBSBF1503 | 0.65 | RALBFv3_RS00030 | | ATP-dependent chaperone ClpB | 0.49 | RALBFv3_RS05140 | | site-specific tyrosine recombinase XerD | low | > 76 |
| Ralstonia solanacearum UW163 | 0.65 | UW163_RS13360 | | ATP-dependent chaperone ClpB | 0.49 | UW163_RS08485 | | site-specific tyrosine recombinase XerD | — | — |
| Herbaspirillum seropedicae SmR1 | 0.65 | HSERO_RS10545 | | protein disaggregation chaperone | 0.52 | HSERO_RS04265 | | tyrosine recombinase XerD | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.65 | GFF3942 | | ClpB protein | 0.46 | GFF5461 | | Tyrosine recombinase XerD | low | > 90 |
| Ralstonia solanacearum PSI07 | 0.64 | RPSI07_RS17450 | | ATP-dependent chaperone ClpB | 0.50 | RPSI07_RS12160 | | site-specific tyrosine recombinase XerD | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.64 | RS_RS06695 | | chaperone protein ClpB | 0.50 | RS_RS12755 | | tyrosine recombinase XerD | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.64 | RR42_RS12455 | | protein disaggregation chaperone | 0.48 | RR42_RS03345 | | recombinase XerD | low | > 128 |
| Ralstonia sp. UNC404CL21Col | 0.64 | ABZR87_RS11485 | | ATP-dependent chaperone ClpB | 0.47 | ABZR87_RS00795 | | site-specific tyrosine recombinase XerD | low | > 80 |
| Acidovorax sp. GW101-3H11 | 0.64 | Ac3H11_1474 | | ClpB protein | 0.52 | Ac3H11_302 | | Tyrosine recombinase XerD | — | — |
| Variovorax sp. SCN45 | 0.64 | GFF2792 | | Chaperone protein ClpB (ATP-dependent unfoldase) | 0.50 | GFF2772 | | Site-specific tyrosine recombinase XerD | low | > 127 |
| Variovorax sp. OAS795 | 0.64 | ABID97_RS10930 | | ATP-dependent chaperone ClpB | 0.50 | ABID97_RS20265 | | site-specific tyrosine recombinase XerD | low | > 91 |
| Castellaniella sp019104865 MT123 | 0.62 | ABCV34_RS06205 | | ATP-dependent chaperone ClpB | 0.51 | ABCV34_RS00515 | | site-specific tyrosine recombinase XerD | low | > 48 |
| Azospirillum sp. SherDot2 | 0.60 | MPMX19_02442 | | Chaperone protein ClpB | 0.35 | MPMX19_02643 | | Tyrosine recombinase XerD | — | — |
| Azospirillum brasilense Sp245 | 0.59 | AZOBR_RS18950 | | ATPase AAA | 0.31 | AZOBR_RS03240 | | recombinase XerD | low | > 97 |
| Sphingomonas koreensis DSMZ 15582 | 0.58 | Ga0059261_1434 | | ATP-dependent chaperone ClpB | 0.26 | Ga0059261_3595 | | Site-specific recombinase XerD | low | > 68 |
| Rhodospirillum rubrum S1H | 0.58 | Rru_A0753 | | Chaperone clpB (NCBI) | 0.34 | Rru_A3738 | | Phage integrase (NCBI) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.58 | AMB_RS07865 | | ATP-dependent chaperone ClpB | 0.32 | AMB_RS19880 | | site-specific tyrosine recombinase XerD | low | > 64 |
| Rhizobium sp. OAE497 | 0.58 | ABIE40_RS17260 | | ATP-dependent chaperone ClpB | 0.34 | ABIE40_RS17685 | | site-specific tyrosine recombinase XerD | low | > 107 |
| Bosea sp. OAE506 | 0.57 | ABIE41_RS23785 | | ATP-dependent chaperone ClpB | 0.31 | ABIE41_RS06100 | | site-specific tyrosine recombinase XerD | low | > 77 |
| Agrobacterium fabrum C58 | 0.57 | Atu4177 | | ATP-dependent Clp protease, ATP-binding subunit | 0.31 | Atu3629 | | site-specific tyrosine recombinase XerD | — | — |
| Sinorhizobium meliloti 1021 | 0.57 | SMc02433 | | ATP-dependent protease | 0.33 | SMc00691 | | site-specific tyrosine recombinase XerD | low | > 103 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.57 | A4249_RS11010 | | ATP-dependent chaperone ClpB | 0.28 | A4249_RS04165 | | site-specific tyrosine recombinase XerD | — | — |
| Synechococcus elongatus PCC 7942 | 0.57 | Synpcc7942_1089 | clpB | ATPase | 0.12 | Synpcc7942_B2651 | xerC | integrase/recombinase | low | > 38 |
| Caulobacter crescentus NA1000 Δfur | 0.56 | CCNA_00922 | | ClpB protein | 0.29 | CCNA_03101 | | site-specific tyrosine recombinase XerD | low | > 67 |
| Caulobacter crescentus NA1000 | 0.56 | CCNA_00922 | | ClpB protein | 0.29 | CCNA_03101 | | site-specific tyrosine recombinase XerD | low | > 66 |
| Dinoroseobacter shibae DFL-12 | 0.56 | Dshi_0617 | | ATPase AAA-2 domain protein (RefSeq) | 0.33 | Dshi_1611 | | integrase family protein (RefSeq) | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.56 | PGA1_c32440 | | chaperone protein ClpB | 0.30 | PGA1_c14060 | | tyrosine recombinase XerD | low | > 62 |
| Rhodopseudomonas palustris CGA009 | 0.56 | TX73_023005 | | ATP-dependent chaperone ClpB | 0.34 | TX73_002625 | | site-specific tyrosine recombinase XerD | low | > 86 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.55 | DVU1874 | clpB | ATP-dependent Clp protease, ATP-binding subunit ClpB (TIGR) | 0.38 | DVU1654 | xerD | site-specific recombinase, phage integrase family (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.54 | DvMF_0567 | | ATP-dependent chaperone ClpB (RefSeq) | 0.36 | DvMF_0359 | | tyrosine recombinase XerD (RefSeq) | low | > 51 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.53 | ABZR88_RS10630 | | ATP-dependent chaperone ClpB | 0.34 | ABZR88_RS10220 | | site-specific tyrosine recombinase XerD | low | > 71 |
| Bifidobacterium breve UCC2003 | 0.52 | BBR_RS19700 | | ATP-dependent chaperone ClpB | 0.32 | BBR_RS16755 | | site-specific tyrosine recombinase XerD | low | > 34 |
| Bacteroides ovatus ATCC 8483 | 0.52 | BACOVA_05393 | | ATP-dependent chaperone protein ClpB | 0.37 | BACOVA_02123 | | tyrosine recombinase XerD | low | > 94 |
| Phocaeicola dorei CL03T12C01 | 0.52 | ABI39_RS18885 | | ATP-dependent chaperone ClpB | 0.38 | ABI39_RS07000 | | site-specific tyrosine recombinase XerD | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.52 | HMPREF1058_RS04980 | | ATP-dependent chaperone ClpB | 0.38 | HMPREF1058_RS09680 | | site-specific tyrosine recombinase XerD | low | > 67 |
| Bacteroides stercoris CC31F | 0.52 | HMPREF1181_RS11960 | | ATP-dependent chaperone ClpB | 0.35 | HMPREF1181_RS01250 | | site-specific tyrosine recombinase XerD | low | > 56 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.52 | BT4597 | | endopeptidase Clp ATP-binding chain B (NCBI ptt file) | 0.36 | BT2843 | | integrase (NCBI ptt file) | low | > 81 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.51 | CA265_RS12775 | | ATP-dependent chaperone ClpB | 0.35 | CA265_RS09520 | | site-specific tyrosine recombinase XerD | low | > 88 |
| Fusobacterium nucleatum SB010 | 0.51 | HUW76_09935 | | ATP-dependent chaperone ClpB | 0.13 | HUW76_06795 | | tyrosine-type recombinase/integrase | low | > 35 |
| Parabacteroides merdae CL09T00C40 | 0.51 | HMPREF1078_RS00500 | | ATP-dependent chaperone ClpB | 0.39 | HMPREF1078_RS04705 | | site-specific tyrosine recombinase XerD | low | > 61 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.51 | CA264_14135 | | ATP-dependent chaperone ClpB | 0.37 | CA264_00850 | | site-specific tyrosine recombinase XerD | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.49 | Echvi_0754 | | ATP-dependent chaperone ClpB | 0.34 | Echvi_1809 | | tyrosine recombinase XerD | low | > 79 |
Not shown: 1 genomes with orthologs for PS417_03830 only; 0 genomes with orthologs for PS417_22895 only