Conservation of cofitness between Psest_0962 and Psest_3576 in Pseudomonas stutzeri RCH2

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0962 DNA repair protein RecN 1.0 Psest_3576 excinuclease ABC, A subunit 0.74 3
Pseudomonas sp. S08-1 0.84 OH686_17050 DNA repair protein RecN 0.93 OH686_15495 excinuclease ABC subunit A low > 80
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_3370 DNA repair protein RecN 0.91 Pf6N2E2_4888 Excinuclease ABC subunit A 0.73 2
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_5106 DNA repair protein RecN 0.91 PfGW456L13_1283 Excinuclease ABC subunit A 0.32 44
Pseudomonas fluorescens FW300-N1B4 0.82 Pf1N1B4_1178 DNA repair protein RecN 0.91 Pf1N1B4_2611 Excinuclease ABC subunit A 0.56 1
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS25910 DNA repair protein RecN 0.91 PFLU_RS27025 excinuclease ABC subunit UvrA low > 109
Pseudomonas fluorescens SBW25 0.81 PFLU_RS25910 DNA repair protein RecN 0.91 PFLU_RS27025 excinuclease ABC subunit UvrA low > 109
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_05660 DNA repair protein RecN 0.91 AO353_06855 ABC-ATPase UvrA 0.67 3
Pseudomonas simiae WCS417 0.80 PS417_24070 recombination and repair protein 0.91 PS417_25395 excinuclease ABC subunit A 0.66 1
Pseudomonas sp. RS175 0.80 PFR28_00071 DNA repair protein RecN 0.91 PFR28_03974 UvrABC system protein A low > 88
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_07510 DNA repair protein RecN 0.91 AO356_14785 ABC-ATPase UvrA 0.78 5
Pseudomonas putida KT2440 0.79 PP_4729 factor used in recombination and DNA repair 0.91 PP_0483 excinuclease (uvrABC system protein A) — —
Pseudomonas syringae pv. syringae B728a 0.78 Psyr_4197 DNA replication and repair protein RecN 0.90 Psyr_4520 Excinuclease ABC subunit A 0.50 2
Pseudomonas syringae pv. syringae B728a ΔmexB 0.78 Psyr_4197 DNA replication and repair protein RecN 0.90 Psyr_4520 Excinuclease ABC subunit A 0.46 17
Marinobacter adhaerens HP15 0.51 HP15_3084 DNA repair protein RecN 0.76 HP15_406 excinuclease ABC, ATPase subunit (A) 0.92 1
Shewanella amazonensis SB2B 0.46 Sama_1026 recombination and repair protein (RefSeq) 0.75 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.66 9
Serratia liquefaciens MT49 0.44 IAI46_19635 DNA repair protein RecN 0.76 IAI46_22905 excinuclease ABC subunit UvrA low > 86
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_04395 DNA repair protein RecN 0.76 CSW01_02080 UvrABC system protein A low > 62
Shewanella loihica PV-4 0.43 Shew_1196 recombination and repair protein (RefSeq) 0.75 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.68 2
Pantoea sp. MT58 0.42 IAI47_04810 DNA repair protein RecN 0.76 IAI47_17815 excinuclease ABC subunit UvrA low > 76
Rahnella sp. WP5 0.42 EX31_RS21760 DNA repair protein RecN 0.76 EX31_RS11990 excinuclease ABC subunit UvrA low > 89
Shewanella oneidensis MR-1 0.42 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.75 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.44 11
Shewanella sp. ANA-3 0.42 Shewana3_1104 recombination and repair protein (RefSeq) 0.75 Shewana3_3592 excinuclease ABC subunit A (RefSeq) low > 73
Klebsiella michiganensis M5al 0.41 BWI76_RS21560 DNA repair protein RecN 0.76 BWI76_RS01950 excinuclease ABC subunit A low > 92
Kangiella aquimarina DSM 16071 0.41 B158DRAFT_0601 DNA replication and repair protein RecN 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.60 15
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF4162 DNA repair protein RecN 0.76 GFF1429 Excinuclease ABC subunit A 0.62 9
Pectobacterium carotovorum WPP14 0.41 HER17_RS17420 DNA repair protein RecN 0.76 HER17_RS03550 excinuclease ABC subunit UvrA low > 75
Escherichia fergusonii Becca 0.40 EFB2_01277 DNA repair protein RecN 0.76 EFB2_04533 UvrABC system protein A low > 86
Escherichia coli BL21 0.40 ECD_02504 recombination and repair protein 0.76 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC low > 60
Dickeya dadantii 3937 0.40 DDA3937_RS04325 DNA repair protein RecN 0.76 DDA3937_RS17605 excinuclease ABC subunit UvrA low > 74
Escherichia coli ECRC62 0.40 BNILDI_11620 recN DNA repair protein RecN 0.76 BNILDI_06380 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_01091 DNA repair protein RecN 0.76 OHPLBJKB_03983 UvrABC system protein A low > 73
Escherichia coli ECOR27 0.40 NOLOHH_12815 recN DNA repair protein RecN 0.76 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA low > 57
Escherichia coli BW25113 0.40 b2616 recN recombination and repair protein (NCBI) 0.76 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.39 24
Escherichia coli ECOR38 0.40 HEPCGN_20265 recN DNA repair protein RecN 0.76 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA low > 85
Escherichia coli ECRC101 0.40 MCAODC_11670 recN DNA repair protein RecN 0.76 MCAODC_03405 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli ECRC102 0.40 NIAGMN_18915 recN DNA repair protein RecN 0.76 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli ECRC101 0.40 OKFHMN_21145 recN DNA repair protein RecN 0.76 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli Nissle 1917 0.40 ECOLIN_RS14775 DNA repair protein RecN 0.76 ECOLIN_RS23485 excinuclease ABC subunit UvrA low > 52
Escherichia coli ECRC99 0.40 KEDOAH_07075 recN DNA repair protein RecN 0.76 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli ECRC98 0.40 JDDGAC_24810 recN DNA repair protein RecN 0.76 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA — —
Enterobacter asburiae PDN3 0.40 EX28DRAFT_2719 DNA repair protein RecN 0.76 EX28DRAFT_4246 excinuclease ABC, A subunit low > 76
Enterobacter sp. TBS_079 0.40 MPMX20_03486 DNA repair protein RecN 0.76 MPMX20_00276 UvrABC system protein A 0.18 70
Dickeya dianthicola 67-19 0.39 HGI48_RS04320 DNA repair protein RecN 0.76 HGI48_RS17610 excinuclease ABC subunit UvrA low > 71
Dickeya dianthicola ME23 0.39 DZA65_RS04235 DNA repair protein RecN 0.76 DZA65_RS18735 excinuclease ABC subunit UvrA low > 75
Erwinia tracheiphila SCR3 0.39 LU632_RS16985 recN DNA repair protein RecN 0.75 LU632_RS23685 uvrA excinuclease ABC subunit UvrA low > 74
Alteromonas macleodii MIT1002 0.38 MIT1002_01443 Recombination protein N 0.76 MIT1002_00179 Excinuclease ABC subunit A low > 70
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS05665 DNA repair protein RecN 0.72 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.80 7
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.3431.1 DNA repair protein RecN 0.73 Xcc-8004.3830.1 Excinuclease ABC subunit A low > 74
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS03060 DNA repair protein 0.70 HSERO_RS19810 excinuclease ABC subunit A low > 78
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS17960 DNA repair protein RecN 0.72 LRK54_RS15210 excinuclease ABC subunit UvrA 0.44 47
Rhodanobacter denitrificans MT42 0.37 LRK55_RS17815 DNA repair protein RecN 0.72 LRK55_RS14925 excinuclease ABC subunit UvrA low > 63
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_07340 recN DNA repair protein RecN 0.72 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA low > 52
Ralstonia solanacearum UW163 0.36 UW163_RS08210 DNA repair protein RecN 0.70 UW163_RS02345 excinuclease ABC subunit UvrA — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11890 DNA repair protein RecN 0.70 RPSI07_RS22065 excinuclease ABC subunit UvrA low > 81
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05415 DNA repair protein RecN 0.70 RALBFv3_RS11235 excinuclease ABC subunit UvrA low > 76
Ralstonia solanacearum GMI1000 0.36 RS_RS13275 DNA repair protein RecN 0.70 RS_RS02080 excinuclease ABC subunit UvrA low > 80
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01065 DNA repair protein RecN 0.70 ABZR87_RS07120 excinuclease ABC subunit UvrA low > 80
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS26535 DNA repair protein RecN 0.69 QEN71_RS01825 excinuclease ABC subunit UvrA low > 153
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS05910 DNA repair protein 0.69 RR42_RS02145 excinuclease ABC subunit A 0.69 3
Dechlorosoma suillum PS 0.35 Dsui_3072 DNA repair protein RecN 0.75 Dsui_1622 excinuclease ABC, A subunit 0.88 5
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3460 DNA repair protein RecN 0.65 Ac3H11_4387 Excinuclease ABC subunit A low > 79
Castellaniella sp019104865 MT123 0.34 ABCV34_RS07470 DNA repair protein RecN 0.62 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.59 37
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_04692 DNA replication and repair protein RecN 0.69 H281DRAFT_01913 Excinuclease ABC subunit A low > 103
Paraburkholderia graminis OAS925 0.33 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.69 ABIE53_000732 excinuclease ABC subunit A 0.29 21
Variovorax sp. SCN45 0.33 GFF2357 DNA repair protein RecN 0.66 GFF4944 Excinuclease ABC subunit A low > 127
Burkholderia phytofirmans PsJN 0.33 BPHYT_RS03560 DNA repair protein 0.69 BPHYT_RS02970 excinuclease ABC subunit A low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF829 DNA repair protein RecN 0.65 GFF2755 Excinuclease ABC subunit A low > 90
Acinetobacter radioresistens SK82 0.31 MPMX26_00239 DNA repair protein RecN 0.69 MPMX26_02892 UvrABC system protein A 0.45 3
Sinorhizobium meliloti 1021 0.30 SMc01877 DNA repair protein 0.59 SMc01235 excinuclease ABC subunit A 0.66 6
Magnetospirillum magneticum AMB-1 0.30 AMB_RS19520 DNA repair protein RecN 0.59 AMB_RS12410 excinuclease ABC subunit UvrA — —
Agrobacterium fabrum C58 0.29 Atu2083 DNA repair protein RecN 0.60 Atu1513 ABC excinuclease subunit A 0.36 16
Bacteroides ovatus ATCC 8483 0.28 BACOVA_00200 DNA repair protein RecN 0.50 BACOVA_03703 excinuclease ABC, A subunit low > 94
Parabacteroides merdae CL09T00C40 0.28 HMPREF1078_RS02000 DNA repair protein RecN 0.50 HMPREF1078_RS00835 excinuclease ABC subunit UvrA low > 61
Bacteroides thetaiotaomicron VPI-5482 0.28 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.50 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.46 34
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_1026 DNA repair protein RecN 0.59 Ga0059261_0674 excinuclease ABC, A subunit 0.35 13
Bacteroides stercoris CC31F 0.28 HMPREF1181_RS10900 DNA repair protein RecN 0.49 HMPREF1181_RS15185 excinuclease ABC subunit UvrA low > 56
Bosea sp. OAE506 0.28 ABIE41_RS12645 DNA repair protein RecN 0.59 ABIE41_RS15100 excinuclease ABC subunit UvrA 0.61 20
Azospirillum sp. SherDot2 0.27 MPMX19_01601 DNA repair protein RecN 0.61 MPMX19_01152 UvrABC system protein A 0.62 7
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS06580 DNA repair protein RecN 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA low > 71
Azospirillum brasilense Sp245 0.27 AZOBR_RS12395 DNA repair protein RecN 0.60 AZOBR_RS15370 excinuclease ABC subunit A — —
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS14855 DNA repair protein RecN 0.48 CA265_RS25080 excinuclease ABC subunit A 0.80 6
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_2067 DNA repair protein RecN 0.51 Echvi_1138 excinuclease ABC, A subunit 0.56 21
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS14500 DNA repair protein RecN 0.49 ABI39_RS15330 excinuclease ABC subunit UvrA low > 72
Rhodopseudomonas palustris CGA009 0.27 TX73_018240 DNA repair protein RecN 0.61 TX73_014580 excinuclease ABC subunit UvrA low > 86
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS18225 DNA repair protein RecN 0.50 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.65 25
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_13235 DNA repair protein RecN 0.50 CA264_18100 ABC-ATPase UvrA low > 74
Rhodospirillum rubrum S1H 0.25 Rru_A0940 DNA repair protein RecN (NCBI) 0.62 Rru_A1752 Excinuclease ABC, A subunit (NCBI) — —
Phaeobacter inhibens DSM 17395 0.25 PGA1_c09720 DNA repair protein RecN 0.58 PGA1_c17370 uvrABC system protein A 0.47 7
Fusobacterium nucleatum SB010 0.25 HUW76_08055 DNA repair protein RecN 0.53 HUW76_06660 excinuclease ABC subunit UvrA low > 35
Synechococcus elongatus PCC 7942 0.24 Synpcc7942_1779 recN DNA repair protein RecN 0.55 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.61 27
Dinoroseobacter shibae DFL-12 0.24 Dshi_2413 DNA repair protein RecN (RefSeq) 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.46 8
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS02620 DNA repair protein RecN 0.61 A4249_RS08575 excinuclease ABC subunit UvrA low > 48
Caulobacter crescentus NA1000 0.23 CCNA_02062 DNA repair protein recN 0.60 CCNA_02673 excinuclease ABC subunit A 0.83 7
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_02062 DNA repair protein recN 0.60 CCNA_02673 excinuclease ABC subunit A low > 67
Mycobacterium tuberculosis H37Rv 0.19 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.56 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA low > 58
Desulfovibrio vulgaris Hildenborough JW710 0.18 DVU2463 recN DNA repair protein RecN (TIGR) 0.47 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) low > 55
Bifidobacterium breve UCC2003 0.16 BBR_RS14030 DNA repair protein RecN 0.54 BBR_RS15510 excinuclease ABC subunit UvrA low > 34
Desulfovibrio vulgaris Miyazaki F 0.10 DvMF_0923 SMC domain protein (RefSeq) 0.46 DvMF_3050 excinuclease ABC, A subunit (RefSeq) low > 51

Not shown: 1 genomes with orthologs for Psest_0962 only; 4 genomes with orthologs for Psest_3576 only