Conservation of cofitness between PGA1_c29780 and PGA1_c35480 in Phaeobacter inhibens DSM 17395

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c29780 3-isopropylmalate dehydratase large subunit 1.0 PGA1_c35480 glycerol-3-phosphate dehydrogenase GpsA 0.92 6
Dinoroseobacter shibae DFL-12 0.85 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq) 0.50 Dshi_3414 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein (RefSeq) 0.65 29
Azospirillum sp. SherDot2 0.75 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.36 MPMX19_02123 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.70 54
Azospirillum brasilense Sp245 0.73 AZOBR_RS03545 isopropylmalate isomerase 0.36 AZOBR_RS00325 glycerol-3-phosphate dehydrogenase 0.73 27
Sinorhizobium meliloti 1021 0.73 SMc03823 isopropylmalate isomerase large subunit 0.38 SMc03229 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.79 69
Bosea sp. OAE506 0.72 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit 0.34 ABIE41_RS05655 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Agrobacterium fabrum C58 0.72 Atu2709 3-isopropylmalate dehydratase, large subunit 0.37 Atu2650 glycerol-3-phosphate dehydrogenase 0.91 19
Rhizobium sp. OAE497 0.71 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.38 ABIE40_RS18055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 107
Rhodospirillum rubrum S1H 0.70 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.37 Rru_A3571 Glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.69 TX73_001245 3-isopropylmalate dehydratase large subunit 0.36 TX73_001320 NAD(P)-dependent glycerol-3-phosphate dehydrogenase
Caulobacter crescentus NA1000 0.65 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.34 CCNA_00068 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Caulobacter crescentus NA1000 Δfur 0.65 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.34 CCNA_00068 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia fergusonii Becca 0.64 EFB2_03973 3-isopropylmalate dehydratase large subunit 0.30 EFB2_00202 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
Sphingomonas koreensis DSMZ 15582 0.64 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.40 Ga0059261_2234 Glycerol-3-phosphate dehydrogenase low > 68
Kangiella aquimarina DSM 16071 0.64 B158DRAFT_1319 3-isopropylmalate dehydratase, large subunit 0.34 B158DRAFT_0712 Glycerol-3-phosphate dehydrogenase
Escherichia coli ECOR27 0.64 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.30 NOLOHH_07635 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit 0.30 OHPLBJKB_00091 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
Escherichia coli ECRC62 0.64 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.30 BNILDI_03880 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli ECOR38 0.64 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.30 HEPCGN_14595 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli Nissle 1917 0.64 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.30 ECOLIN_RS20595 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli BL21 0.64 ECD_00074 3-isopropylmalate dehydratase large subunit 0.30 ECD_03466 glycerol-3-phosphate dehydrogenase (NAD+)
Escherichia coli BW25113 0.64 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.30 b3608 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (NCBI)
Escherichia coli ECRC102 0.64 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1 0.30 NIAGMN_13515 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Marinobacter adhaerens HP15 0.64 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.31 HP15_1762 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli ECRC101 0.64 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.30 MCAODC_06265 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli ECRC98 0.64 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.30 JDDGAC_19380 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli ECRC101 0.64 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.30 OKFHMN_15755 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli ECRC99 0.64 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1 0.30 KEDOAH_12395 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Pseudomonas sp. S08-1 0.64 OH686_04480 3-isopropylmalate dehydratase large subunit 0.28 OH686_00475 Glycerol-3-phosphate dehydrogenase [NAD(P)+] low > 80
Dickeya dianthicola ME23 0.64 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.29 DZA65_RS00850 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Klebsiella michiganensis M5al 0.64 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.30 BWI76_RS27210 glycerol-3-phosphate dehydrogenase
Dickeya dadantii 3937 0.64 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.29 DDA3937_RS20405 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Dickeya dianthicola 67-19 0.64 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.29 HGI48_RS00795 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 71
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS14400 isopropylmalate isomerase 0.30 RR42_RS01845 glycerol-3-phosphate dehydrogenase 0.83 11
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_21400 isopropylmalate isomerase 0.33 AO356_19795 glycerol-3-phosphate dehydrogenase 0.89 25
Rahnella sp. WP5 0.64 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.31 EX31_RS14340 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 89
Enterobacter asburiae PDN3 0.64 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.29 EX28DRAFT_3859 Glycerol-3-phosphate dehydrogenase
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.30 ABZR87_RS06770 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.70 37
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.30 GFF402 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.33 Pf6N2E2_5875 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)
Pseudomonas sp. RS175 0.63 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.32 PFR28_03076 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.33 PfGW456L13_2046 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.88 29
Pseudomonas fluorescens FW300-N1B4 0.63 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.29 Pf1N1B4_3518 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.67 49
Enterobacter sp. TBS_079 0.63 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.29 MPMX20_00125 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
Pseudomonas fluorescens FW300-N2E3 0.63 AO353_20620 isopropylmalate isomerase 0.32 AO353_01735 glycerol-3-phosphate dehydrogenase
Pectobacterium carotovorum WPP14 0.63 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.29 HER17_RS20735 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 75
Ralstonia solanacearum PSI07 0.63 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.29 RPSI07_RS22390 glycerol-3-phosphate dehydrogenase 0.66 18
Xanthomonas campestris pv. campestris strain 8004 0.63 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.31 Xcc-8004.271.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.65 74
Pantoea sp. MT58 0.63 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.31 IAI47_00740 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Paraburkholderia graminis OAS925 0.63 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.27 ABIE53_000667 glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.51 61
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.29 H281DRAFT_02000 glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.48 35
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.32 Psyr_2022 Glycerol-3-phosphate dehydrogenase (NAD(P)+) low > 86
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.32 Psyr_2022 Glycerol-3-phosphate dehydrogenase (NAD(P)+)
Pseudomonas simiae WCS417 0.62 PS417_18600 isopropylmalate isomerase 0.32 PS417_09000 glycerol-3-phosphate dehydrogenase
Serratia liquefaciens MT49 0.62 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.31 IAI46_24690 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 86
Pseudomonas stutzeri RCH2 0.62 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.30 Psest_2471 Glycerol-3-phosphate dehydrogenase
Castellaniella sp019104865 MT123 0.62 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit 0.34 ABCV34_RS14250 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 48
Pseudomonas putida KT2440 0.62 PP_1985 3-isopropylmalate dehydratase large subunit 0.34 PP_4169 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.27 QEN71_RS01465 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.70 55
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.31 RALBFv3_RS10920 glycerol-3-phosphate dehydrogenase 0.64 11
Ralstonia solanacearum UW163 0.62 UW163_RS11105 3-isopropylmalate dehydratase large subunit 0.31 UW163_RS02660 glycerol-3-phosphate dehydrogenase
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS16515 isopropylmalate isomerase 0.34 HSERO_RS00795 glycerol-3-phosphate dehydrogenase 0.79 36
Pseudomonas fluorescens SBW25 0.62 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.32 PFLU_RS09055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.32 PFLU_RS09055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.22 91
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS33915 isopropylmalate isomerase 0.26 BPHYT_RS02610 glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.79 47
Acinetobacter radioresistens SK82 0.62 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.30 MPMX26_01116 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
Ralstonia solanacearum GMI1000 0.62 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.30 RS_RS01760 glycerol-3-phosphate dehydrogenase (NAD(P)(+))
Variovorax sp. OAS795 0.62 ABID97_RS08465 3-isopropylmalate dehydratase large subunit 0.34 ABID97_RS07405 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.34 GFF1222 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) low > 90
Variovorax sp. SCN45 0.61 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.32 GFF2573 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) low > 127
Mycobacterium tuberculosis H37Rv 0.61 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) 0.33 Rv2982c Probable glycerol-3-phosphate dehydrogenase [NAD(P)+] GpdA2 (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
Dechlorosoma suillum PS 0.60 Dsui_3201 3-isopropylmalate dehydratase, large subunit 0.31 Dsui_1277 glycerol-3-phosphate dehydrogenase
Vibrio cholerae E7946 ATCC 55056 0.60 CSW01_12605 3-isopropylmalate dehydratase large subunit 0.32 CSW01_13405 glycerol-3-phosphate dehydrogenase (NAD(P)(+))
Erwinia tracheiphila SCR3 0.59 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.31 LU632_RS21875 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 74
Alteromonas macleodii MIT1002 0.59 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.34 MIT1002_00485 Glycerol-3-phosphate dehydrogenase [NAD(P)+] low > 70
Shewanella loihica PV-4 0.59 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.32 Shew_3803 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq)
Acidovorax sp. GW101-3H11 0.59 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.33 Ac3H11_3860 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.78 39
Shewanella sp. ANA-3 0.59 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.30 Shewana3_0054 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq)
Shewanella oneidensis MR-1 0.59 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.31 SO0053 gpsA glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI ptt file)
Shewanella amazonensis SB2B 0.58 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.31 Sama_0063 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq)
Rhodanobacter denitrificans FW104-10B01 0.56 LRK54_RS07375 3-isopropylmalate dehydratase large subunit 0.31 LRK54_RS10860 NAD(P)-dependent glycerol-3-phosphate dehydrogenase
Rhodanobacter denitrificans MT42 0.56 LRK55_RS07105 3-isopropylmalate dehydratase large subunit 0.31 LRK55_RS10550 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Bifidobacterium breve UCC2003 0.55 BBR_RS19630 3-isopropylmalate dehydratase large subunit 0.25 BBR_RS12080 NAD(P)-dependent glycerol-3-phosphate dehydrogenase
Echinicola vietnamensis KMM 6221, DSM 17526 0.54 Echvi_2059 3-isopropylmalate dehydratase, large subunit 0.22 Echvi_0322 Glycerol-3-phosphate dehydrogenase
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit 0.17 ABZR88_RS01515 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Phocaeicola dorei CL03T12C01 0.53 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.15 ABI39_RS21145 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Phocaeicola vulgatus CL09T03C04 0.53 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit 0.15 HMPREF1058_RS07270 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Bacteroides stercoris CC31F 0.53 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit 0.15 HMPREF1181_RS08570 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Pedobacter sp. GW460-11-11-14-LB5 0.53 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.18 CA265_RS16375 glycerol-3-phosphate dehydrogenase
Bacteroides ovatus ATCC 8483 0.53 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.14 BACOVA_03234 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminal domain protein
Bacteroides thetaiotaomicron VPI-5482 0.52 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.14 BT2123 glycerol-3-phosphate dehydrogenase (NCBI ptt file)
Pontibacter actiniarum KMM 6156, DSM 19842 0.52 CA264_09435 3-isopropylmalate dehydratase large subunit 0.16 CA264_05630 glycerol-3-phosphate dehydrogenase low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.52 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.35 A4249_RS15450 NAD(P)-dependent glycerol-3-phosphate dehydrogenase
Parabacteroides merdae CL09T00C40 0.51 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.14 HMPREF1078_RS10070 glycerol-3-phosphate dehydrogenase
Lysobacter sp. OAE881 0.50 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.32 ABIE51_RS00495 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.32 ABZR86_RS13250 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit 0.34 OKGIIK_13015 gpsA glycerol-3-phosphate dehydrogenase
Synechococcus elongatus PCC 7942 0.49 Synpcc7942_1898 leuC isopropylmalate isomerase large subunit 0.24 Synpcc7942_2522 Glycerol-3-phosphate dehydrogenase (NAD(P)+)
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU2982 leuC 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data) 0.33 DVU3159 gpsA glycerol-3-phosphate dehydrogenase (NAD(P)+) (TIGR) low > 55

Not shown: 4 genomes with orthologs for PGA1_c29780 only; 1 genomes with orthologs for PGA1_c35480 only