Conservation of cofitness between DZA65_RS19385 and DZA65_RS00935 in Dickeya dianthicola ME23

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola ME23 1.0 DZA65_RS19385 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 1.0 DZA65_RS00935 N-acetyl-gamma-glutamyl-phosphate reductase 0.89 6
Dickeya dianthicola 67-19 1.00 HGI48_RS18245 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.98 HGI48_RS00875 N-acetyl-gamma-glutamyl-phosphate reductase 0.63 54
Dickeya dadantii 3937 0.95 DDA3937_RS18310 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.99 DDA3937_RS20350 N-acetyl-gamma-glutamyl-phosphate reductase 0.75 47
Pectobacterium carotovorum WPP14 0.93 HER17_RS02895 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.89 HER17_RS20630 N-acetyl-gamma-glutamyl-phosphate reductase low > 75
Rahnella sp. WP5 0.91 EX31_RS03835 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.85 EX31_RS14190 N-acetyl-gamma-glutamyl-phosphate reductase 0.96 15
Klebsiella michiganensis M5al 0.89 BWI76_RS04465 carbamoyl-phosphate synthase small subunit 0.80 BWI76_RS00845 N-acetyl-gamma-glutamyl-phosphate reductase 0.53 29
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3637 carbamoyl-phosphate synthase, small subunit 0.79 EX28DRAFT_4420 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Escherichia coli BW25113 0.88 b0032 carA carbamoyl-phosphate synthase small subunit (NCBI) 0.77 b3958 argC N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) 0.87 7
Serratia liquefaciens MT49 0.88 IAI46_03190 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.84 IAI46_24515 N-acetyl-gamma-glutamyl-phosphate reductase low > 86
Escherichia coli BL21 0.88 ECD_00036 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase 0.77 ECD_03843 N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding 0.59 59
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_03625 Carbamoyl-phosphate synthase small chain 0.77 OHPLBJKB_04092 N-acetyl-gamma-glutamyl-phosphate reductase low > 73
Escherichia coli ECOR38 0.88 HEPCGN_08930 carA carbamoyl phosphate synthase small subunit 0.76 HEPCGN_12230 argC N-acetyl-gamma-glutamyl-phosphate reductase 0.83 57
Escherichia coli ECOR27 0.88 NOLOHH_03275 carA carbamoyl phosphate synthase small subunit 0.77 NOLOHH_05730 argC N-acetyl-gamma-glutamyl-phosphate reductase 0.80 56
Escherichia coli ECRC101 0.88 MCAODC_01460 carA carbamoyl phosphate synthase small subunit 0.76 MCAODC_04085 argC N-acetyl-gamma-glutamyl-phosphate reductase low > 87
Escherichia coli ECRC99 0.88 KEDOAH_17210 carA carbamoyl phosphate synthase small subunit 0.76 KEDOAH_14575 argC N-acetyl-gamma-glutamyl-phosphate reductase
Escherichia coli ECRC102 0.88 NIAGMN_08795 carA carbamoyl phosphate synthase small subunit 0.76 NIAGMN_11335 argC N-acetyl-gamma-glutamyl-phosphate reductase
Escherichia coli ECRC100 0.88 OKFHMN_10945 carA carbamoyl phosphate synthase small subunit 0.76 OKFHMN_13585 argC N-acetyl-gamma-glutamyl-phosphate reductase 0.86 32
Escherichia coli ECRC62 0.88 BNILDI_08325 carA carbamoyl phosphate synthase small subunit 0.77 BNILDI_05795 argC N-acetyl-gamma-glutamyl-phosphate reductase low > 75
Escherichia coli ECRC98 0.88 JDDGAC_14540 carA carbamoyl phosphate synthase small subunit 0.76 JDDGAC_17210 argC N-acetyl-gamma-glutamyl-phosphate reductase 0.78 44
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF214 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.77 GFF2344 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) low > 78
Escherichia fergusonii Becca 0.88 EFB2_04013 Carbamoyl-phosphate synthase small chain 0.76 EFB2_04656 N-acetyl-gamma-glutamyl-phosphate reductase low > 86
Escherichia coli Nissle 1917 0.88 ECOLIN_RS00175 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.76 ECOLIN_RS22845 N-acetyl-gamma-glutamyl-phosphate reductase 0.78 24
Enterobacter sp. TBS_079 0.85 MPMX20_00739 Carbamoyl-phosphate synthase small chain 0.78 MPMX20_04522 N-acetyl-gamma-glutamyl-phosphate reductase 0.89 9
Pantoea sp. MT58 0.84 IAI47_16120 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.81 IAI47_00905 N-acetyl-gamma-glutamyl-phosphate reductase 0.77 76
Erwinia tracheiphila SCR3 0.84 LU632_RS02755 carA glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.79 LU632_RS19615 argC N-acetyl-gamma-glutamyl-phosphate reductase 0.74 17
Vibrio cholerae E7946 ATCC 55056 0.82 CSW01_12105 carbamoyl-phosphate synthase small subunit 0.67 CSW01_13380 N-acetyl-gamma-glutamyl-phosphate reductase low > 62
Shewanella amazonensis SB2B 0.79 Sama_2504 carbamoyl phosphate synthase small subunit (RefSeq) 0.46 Sama_0256 argC N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq) 0.76 42
Shewanella loihica PV-4 0.78 Shew_2839 carbamoyl phosphate synthase small subunit (RefSeq) 0.46 Shew_0202 argC N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq) 0.88 36
Shewanella oneidensis MR-1 0.76 SO1141 carA carbamoyl-phosphate synthase, small subunit (NCBI ptt file) 0.46 SO0275 argC N-acetyl-gamma-glutamyl-phosphate reductase (NCBI ptt file) 0.88 48
Shewanella sp. ANA-3 0.74 Shewana3_0967 carbamoyl phosphate synthase small subunit (RefSeq) 0.47 Shewana3_3905 argC N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq) 0.88 58
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_0615 carbamoyl-phosphate synthase, small subunit 0.16 B158DRAFT_1979 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Alteromonas macleodii MIT1002 0.72 MIT1002_01466 Carbamoyl-phosphate synthase small chain 0.48 MIT1002_00471 N-acetyl-gamma-glutamyl-phosphate reductase 0.96 33
Pseudomonas stutzeri RCH2 0.71 Psest_0967 carbamoyl-phosphate synthase, small subunit 0.31 Psest_3639 N-acetyl-gamma-glutamyl-phosphate reductase, common form
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_05635 carbamoyl phosphate synthase small subunit 0.31 AO353_07155 N-acetyl-gamma-glutamyl-phosphate reductase
Pseudomonas sp. S08-1 0.71 OH686_17075 Carbamoyl-phosphate synthase small chain 0.32 OH686_15195 N-acetyl-gamma-glutamyl-phosphate reductase
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_5100 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.31 PfGW456L13_1233 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_3365 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.32 Pf6N2E2_4836 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_1173 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.31 Pf1N1B4_2559 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_07485 carbamoyl phosphate synthase small subunit 0.32 AO356_14490 N-acetyl-gamma-glutamyl-phosphate reductase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.31 Psyr_4569 N-acetyl-gamma-glutamyl-phosphate reductase
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.31 Psyr_4569 N-acetyl-gamma-glutamyl-phosphate reductase
Pseudomonas putida KT2440 0.70 PP_4724 Carbamoyl-phosphate synthase small chain 0.33 PP_0432 N-acetyl-gamma-glutamyl-phosphate reductase 1 low > 96
Pseudomonas simiae WCS417 0.70 PS417_24045 carbamoyl phosphate synthase small subunit 0.32 PS417_25660 N-acetyl-gamma-glutamyl-phosphate reductase
Marinobacter adhaerens HP15 0.70 HP15_3078 carbamoyl-phosphate synthase small chain 0.31 HP15_352 N-acetyl-gamma-glutamyl-phosphate reductase 0.40 12
Pseudomonas fluorescens SBW25 0.70 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.31 PFLU_RS27315 N-acetyl-gamma-glutamyl-phosphate reductase
Pseudomonas sp. RS175 0.70 PFR28_00076 Carbamoyl-phosphate synthase small chain 0.31 PFR28_04033 N-acetyl-gamma-glutamyl-phosphate reductase
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.31 PFLU_RS27315 N-acetyl-gamma-glutamyl-phosphate reductase
Acinetobacter radioresistens SK82 0.68 MPMX26_00767 Carbamoyl-phosphate synthase small chain 0.32 MPMX26_01281 N-acetyl-gamma-glutamyl-phosphate reductase low > 36
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS06920 carbamoyl phosphate synthase small subunit 0.30 HSERO_RS19210 N-acetyl-gamma-glutamyl-phosphate reductase
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS13520 carbamoyl phosphate synthase small subunit 0.15 RR42_RS01210 n-acetyl-gamma-glutamyl-phosphate reductase
Rhodanobacter denitrificans MT42 0.65 LRK55_RS17850 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.18 LRK55_RS02140 N-acetyl-gamma-glutamyl-phosphate reductase
Lysobacter sp. OAE881 0.65 ABIE51_RS11625 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.19 ABIE51_RS13385 N-acetyl-gamma-glutamyl-phosphate reductase 0.53 53
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.2914.1 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.19 Xcc-8004.2322.1 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS17995 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.18 LRK54_RS02385 N-acetyl-gamma-glutamyl-phosphate reductase
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS14150 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.16 ABZR87_RS05600 N-acetyl-gamma-glutamyl-phosphate reductase
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS05605 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.19 ABZR86_RS08700 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data)
Ralstonia solanacearum PSI07 0.64 RPSI07_RS15245 carbamoyl-phosphate synthase small subunit 0.17 RPSI07_RS23280 N-acetyl-gamma-glutamyl-phosphate reductase
Acidovorax sp. GW101-3H11 0.64 Ac3H11_435 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.13 Ac3H11_2950 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS02200 carbamoyl-phosphate synthase small subunit 0.17 RALBFv3_RS10090 N-acetyl-gamma-glutamyl-phosphate reductase
Ralstonia solanacearum UW163 0.64 UW163_RS15510 carbamoyl-phosphate synthase small subunit 0.17 UW163_RS03490 N-acetyl-gamma-glutamyl-phosphate reductase
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS04775 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.15 QEN71_RS28485 N-acetyl-gamma-glutamyl-phosphate reductase
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_07300 carbamoyl phosphate synthase small subunit 0.17 OKGIIK_09435 argC N-acetyl-gamma-glutamyl-phosphate reductase low > 52
Ralstonia solanacearum GMI1000 0.63 RS_RS07620 carbamoyl-phosphate synthase small subunit 0.17 RS_RS00700 N-acetyl-gamma-glutamyl-phosphate reductase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF4899 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.12 GFF2503 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Variovorax sp. OAS795 0.63 ABID97_RS17090 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.11 ABID97_RS02250 N-acetyl-gamma-glutamyl-phosphate reductase
Variovorax sp. SCN45 0.63 GFF377 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.13 GFF4146 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04402 carbamoyl-phosphate synthase small subunit 0.15 H281DRAFT_05840 N-acetyl-gamma-glutamyl-phosphate reductase
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS14195 carbamoyl phosphate synthase small subunit 0.15 BPHYT_RS18340 n-acetyl-gamma-glutamyl-phosphate reductase 0.49 107
Paraburkholderia graminis OAS925 0.62 ABIE53_003005 carbamoyl-phosphate synthase small subunit 0.15 ABIE53_000020 N-acetyl-gamma-glutamyl-phosphate reductase
Castellaniella sp019104865 MT123 0.59 ABCV34_RS15505 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.31 ABCV34_RS10590 N-acetyl-gamma-glutamyl-phosphate reductase
Azospirillum brasilense Sp245 0.51 AZOBR_RS10920 carbamoyl phosphate synthase small subunit 0.30 AZOBR_RS07795 N-acetyl-gamma-glutamyl-phosphate reductase
Azospirillum sp. SherDot2 0.51 MPMX19_00757 Carbamoyl-phosphate synthase small chain 0.30 MPMX19_03843 N-acetyl-gamma-glutamyl-phosphate reductase
Magnetospirillum magneticum AMB-1 0.51 AMB_RS03600 carbamoyl-phosphate synthase small subunit 0.31 AMB_RS09075 N-acetyl-gamma-glutamyl-phosphate reductase
Rhodospirillum rubrum S1H 0.48 Rru_A2885 Carbamoyl-phosphate synthase, small subunit (NCBI) 0.34 Rru_A2421 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) 0.59 49
Rhodopseudomonas palustris CGA009 0.48 TX73_006555 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.15 TX73_012875 N-acetyl-gamma-glutamyl-phosphate reductase
Phaeobacter inhibens DSM 17395 0.48 PGA1_c06670 carbamoyl-phosphate synthase small chain 0.24 PGA1_c17050 N-acetyl-gamma-glutamyl-phosphate reductase ArgC 0.87 5
Sphingomonas koreensis DSMZ 15582 0.47 Ga0059261_4243 carbamoyl-phosphate synthase, small subunit 0.12 Ga0059261_0351 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data)
Brevundimonas sp. GW460-12-10-14-LB2 0.47 A4249_RS16140 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.12 A4249_RS05920 N-acetyl-gamma-glutamyl-phosphate reductase
Dinoroseobacter shibae DFL-12 0.47 Dshi_2387 carbamoyl-phosphate synthase, small subunit (RefSeq) 0.27 Dshi_1759 N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq)
Bosea sp. OAE506 0.47 ABIE41_RS11975 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.18 ABIE41_RS15755 N-acetyl-gamma-glutamyl-phosphate reductase
Synechococcus elongatus PCC 7942 0.45 Synpcc7942_2122 carA carbamoyl phosphate synthase small subunit 0.29 Synpcc7942_1433 argC N-acetyl-gamma-glutamyl-phosphate reductase
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS15240 carbamoyl phosphate synthase small subunit 0.22 CA265_RS18540 N-succinylglutamylphosphate reductase (EC 1.2.1.38) (from data)
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_19490 carbamoyl phosphate synthase small subunit 0.22 CA264_06250 N-acetyl-gamma-glutamyl-phosphate reductase low > 74
Desulfovibrio vulgaris Hildenborough JW710 0.39 DVU3113 carA carbamoyl-phosphate synthase, small subunit (TIGR) 0.29 DVU0492 argC N-acetyl-gamma-glutamyl-phosphate reductase (TIGR)
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS17830 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.22 ABZR88_RS15505 N-acetyl-gamma-glutamyl-phosphate reductase
Bifidobacterium breve UCC2003 0.39 BBR_RS13630 carbamoyl-phosphate synthase small subunit 0.19 BBR_RS13885 N-acetyl-gamma-glutamyl-phosphate reductase low > 34
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_0226 carbamoyl-phosphate synthase, small subunit 0.22 Echvi_3847 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data)
Methanococcus maripaludis JJ 0.37 MMJJ_RS06195 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.34 MMJJ_RS04805 N-acetyl-gamma-glutamyl-phosphate reductase
Desulfovibrio vulgaris Miyazaki F 0.37 DvMF_2370 carbamoyl phosphate synthase small subunit (RefSeq) 0.31 DvMF_1717 argC N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq) 0.71 20
Methanococcus maripaludis S2 0.37 MMP_RS08170 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.34 MMP_RS00680 N-acetyl-gamma-glutamyl-phosphate reductase
Mycobacterium tuberculosis H37Rv 0.36 Rv1383 Probable carbamoyl-phosphate synthase small chain CarA (carbamoyl-phosphate synthetase glutamine chain) 0.21 Rv1652 Probable N-acetyl-gamma-glutamyl-phoshate reductase ArgC
Bacteroides ovatus ATCC 8483 0.34 BACOVA_03753 carbamoyl-phosphate synthase, small subunit 0.21 BACOVA_03589 N-acetyl-gamma-glutamyl-phosphate reductase low > 94
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS20670 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.20 ABI39_RS02970 N-acetyl-gamma-glutamyl-phosphate reductase low > 72
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS06875 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.20 HMPREF1058_RS08840 N-acetyl-gamma-glutamyl-phosphate reductase low > 67
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS01295 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.21 HMPREF1078_RS10580 N-acetyl-gamma-glutamyl-phosphate reductase low > 61
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS16070 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.20 HMPREF1181_RS03450 N-acetyl-gamma-glutamyl-phosphate reductase low > 56
Bacteroides thetaiotaomicron VPI-5482 0.33 BT0556 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) 0.20 BT3759 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) low > 81

Not shown: 7 genomes with orthologs for DZA65_RS19385 only; 0 genomes with orthologs for DZA65_RS00935 only