Conservation of cofitness between CSW01_11870 and CSW01_13680 in Vibrio cholerae E7946 ATCC 55056

117 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_11870 DNA repair protein RadA 1.0 CSW01_13680 DNA helicase RecG 0.77 9
Escherichia coli BL21 0.83 ECD_04265 DNA repair protein 0.68 ECD_03509 ATP-dependent DNA helicase 0.75 7
Escherichia coli BW25113 0.83 b4389 radA predicted repair protein (NCBI) 0.68 b3652 recG ATP-dependent DNA helicase (NCBI) 0.27 21
Escherichia coli ECOR38 0.83 HEPCGN_09195 radA DNA repair protein RadA 0.68 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.45 31
Escherichia fergusonii Becca 0.83 EFB2_04057 DNA repair protein RadA 0.68 EFB2_00136 ATP-dependent DNA helicase RecG low > 86
Escherichia coli Nissle 1917 0.83 ECOLIN_RS25190 DNA repair protein RadA 0.68 ECOLIN_RS20800 ATP-dependent DNA helicase RecG low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.83 OHPLBJKB_03672 DNA repair protein RadA 0.68 OHPLBJKB_00049 ATP-dependent DNA helicase RecG low > 74
Escherichia coli ECRC99 0.82 KEDOAH_16960 radA DNA repair protein RadA 0.69 KEDOAH_12600 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECOR27 0.82 NOLOHH_03520 radA DNA repair protein RadA 0.68 NOLOHH_07425 recG ATP-dependent DNA helicase RecG low > 75
Escherichia coli ECRC100 0.82 OKFHMN_11195 radA DNA repair protein RadA 0.69 OKFHMN_15545 recG ATP-dependent DNA helicase RecG low > 79
Escherichia coli ECRC101 0.82 MCAODC_01710 radA DNA repair protein RadA 0.69 MCAODC_06055 recG ATP-dependent DNA helicase RecG low > 87
Escherichia coli ECRC102 0.82 NIAGMN_09045 radA DNA repair protein RadA 0.69 NIAGMN_13305 recG ATP-dependent DNA helicase RecG low > 80
Escherichia coli ECRC62 0.82 BNILDI_08075 radA DNA repair protein RadA 0.68 BNILDI_04090 recG ATP-dependent DNA helicase RecG low > 75
Escherichia coli ECRC98 0.82 JDDGAC_14790 radA DNA repair protein RadA 0.69 JDDGAC_19170 recG ATP-dependent DNA helicase RecG low > 87
Klebsiella michiganensis M5al 0.82 BWI76_RS04165 DNA repair protein RadA 0.68 BWI76_RS27440 DNA helicase RecG low > 92
Klebsiella pneumoniae MKP103 0.82 KDGMDA_12435 DNA repair protein RadA 0.69 KDGMDA_08135 ATP-dependent DNA helicase RecG low > 94
Klebsiella pneumoniae MRSN742743 0.82 GJGHJB_04290 radA DNA repair protein RadA 0.69 GJGHJB_00114 recG ATP-dependent DNA helicase RecG low > 83
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.82 GFF1057 DNA repair protein RadA 0.69 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.38 50
Enterobacter asburiae PDN3 0.81 EX28DRAFT_3597 DNA repair protein RadA 0.67 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 76
Enterobacter sp. TBS_079 0.81 MPMX20_00694 DNA repair protein RadA 0.68 MPMX20_00084 ATP-dependent DNA helicase RecG 0.19 13
Erwinia amylovora T8 0.81 OLJFJH_01590 DNA repair protein RadA 0.69 OLJFJH_05550 ATP-dependent DNA helicase RecG low > 58
Rahnella sp. WP5 0.81 EX31_RS04030 DNA repair protein RadA 0.67 EX31_RS15820 ATP-dependent DNA helicase RecG low > 89
Erwinia tracheiphila HP pepo 2.2 0.80 IJEDHG_06365 radA DNA repair protein RadA 0.67 IJEDHG_08345 recG ATP-dependent DNA helicase RecG low > 61
Erwinia tracheiphila SCR3 0.80 LU632_RS02550 radA DNA repair protein RadA 0.67 LU632_RS22190 recG ATP-dependent DNA helicase RecG low > 73
Pantoea sp. MT58 0.80 IAI47_16345 DNA repair protein RadA 0.70 IAI47_00500 ATP-dependent DNA helicase RecG low > 76
Pantoea agglomerans CFBP13505 P0401 0.79 PagCFBP13516_RS16655 radA DNA repair protein RadA 0.70 PagCFBP13516_RS00485 recG ATP-dependent DNA helicase RecG low > 80
Serratia liquefaciens MT49 0.79 IAI46_02945 DNA repair protein RadA 0.69 IAI46_24905 ATP-dependent DNA helicase RecG low > 87
Pectobacterium carotovorum WPP14 0.77 HER17_RS19085 DNA repair protein RadA 0.68 HER17_RS21395 ATP-dependent DNA helicase RecG 0.66 46
Dickeya dadantii 3937 0.76 DDA3937_RS02420 DNA repair protein RadA 0.69 DDA3937_RS00170 ATP-dependent DNA helicase RecG low > 74
Dickeya dianthicola ME23 0.76 DZA65_RS02485 DNA repair protein RadA 0.68 DZA65_RS22160 ATP-dependent DNA helicase RecG low > 75
Dickeya dianthicola 67-19 0.76 HGI48_RS02380 DNA repair protein RadA 0.68 HGI48_RS21190 ATP-dependent DNA helicase RecG low > 71
Shewanella sp. ANA-3 0.74 Shewana3_1049 DNA repair protein RadA (RefSeq) 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.43 22
Alteromonas macleodii MIT1002 0.74 MIT1002_02706 Lon protease 2 0.64 MIT1002_00111 ATP-dependent DNA helicase RecG low > 70
Shewanella oneidensis MR-1 0.74 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.53 9
Shewanella amazonensis SB2B 0.73 Sama_0981 DNA repair protein RadA (RefSeq) 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.38 29
Marinobacter adhaerens HP15 0.68 HP15_487 DNA repair protein RadA 0.55 HP15_309 DNA helicase, ATP-dependent, RecG 0.79 8
Pseudomonas aeruginosa PUPa3 0.64 NPBIFN_04881 radA DNA repair protein RadA 0.55 NPBIFN_05672 recG ATP-dependent DNA helicase RecG 0.25 66
Pseudomonas aeruginosa PA14 0.64 IKLFDK_00465 DNA repair protein RadA 0.55 IKLFDK_26730 ATP-dependent DNA helicase RecG 0.59 5
Pseudomonas aeruginosa MRSN321 0.64 PFGADD_04820 radA DNA repair protein RadA 0.55 PFGADD_05596 recG ATP-dependent DNA helicase RecG 0.48 2
Pseudomonas sp. DMC3 0.63 GFF3954 DNA repair protein RadA 0.55 GFF427 ATP-dependent DNA helicase RecG low > 89
Pseudomonas fluorescens SBW25 0.63 PFLU_RS26230 DNA repair protein RadA 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas lactucae CFBP13502 0.63 GEMAOFIL_05014 DNA repair protein RadA 0.55 GEMAOFIL_00042 ATP-dependent DNA helicase RecG low > 96
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_1442 DNA repair protein RadA 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS26230 DNA repair protein RadA 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.24 17
Pseudomonas fluorescens FW300-N1B4 0.63 Pf1N1B4_2768 DNA repair protein RadA 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.28 34
Pseudomonas orientalis W4I3 0.63 QF045_RS26600 DNA repair protein RadA 0.55 QF045_RS02225 ATP-dependent DNA helicase RecG low > 93
Pseudomonas sp. RS175 0.63 PFR28_03792 DNA repair protein RadA 0.55 PFR28_04435 ATP-dependent DNA helicase RecG low > 88
Pseudomonas simiae WCS417 0.63 PS417_24305 DNA repair protein RadA 0.55 PS417_27870 ATP-dependent DNA helicase RecG low > 88
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_5076 DNA repair protein RadA 0.55 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.27 16
Pseudomonas fluorescens FW300-N2C3 0.63 AO356_15680 DNA repair protein RadA 0.55 AO356_12380 ATP-dependent DNA helicase RecG 0.35 34
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_4275 DNA replication and repair protein RadA 0.55 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas fluorescens FW300-N2E3 0.63 AO353_13980 DNA repair protein RadA 0.55 AO353_09320 ATP-dependent DNA helicase RecG 0.48 10
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_4275 DNA replication and repair protein RadA 0.55 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas protegens RBAN4 0.63 FABNJH_27060 radA DNA repair protein RadA 0.55 FABNJH_30625 recG ATP-dependent DNA helicase RecG — —
Pseudomonas sp. S08-1 0.62 OH686_16185 DNA repair protein RadA 0.56 OH686_13505 ATP-dependent DNA helicase RecG low > 80
Pseudomonas putida KT2440 0.62 PP_4644 DNA repair enzyme 0.56 PP_5310 junction-specific ATP-dependent DNA helicase low > 96
Pseudomonas sp. BP01 0.62 JOY50_RS15685 radA DNA repair protein RadA 0.56 JOY50_RS08945 recG ATP-dependent DNA helicase RecG 0.35 21
Pseudomonas stutzeri RCH2 0.62 Psest_3401 DNA repair protein RadA 0.57 Psest_4192 ATP-dependent DNA helicase RecG — —
Pseudomonas sp. SVBP6 0.62 COO64_RS02920 radA DNA repair protein RadA 0.55 COO64_RS01595 recG ATP-dependent DNA helicase RecG low > 91
Pseudomonas segetis P6 0.62 ACVTMO_RS19740 radA DNA repair protein RadA 0.57 ACVTMO_RS00200 recG ATP-dependent DNA helicase RecG low > 75
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.3812.1 DNA repair protein RadA 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 74
Rhodanobacter sp000427505 FW510-R12 0.59 LRK53_RS07420 DNA repair protein RadA 0.52 LRK53_RS16735 ATP-dependent DNA helicase RecG low > 59
Rhodanobacter sp. FW510-T8 0.59 OKGIIK_09580 radA DNA repair protein RadA 0.50 OKGIIK_12090 recG ATP-dependent DNA helicase RecG low > 53
Kangiella aquimarina DSM 16071 0.59 B158DRAFT_0877 DNA replication and repair protein RadA 0.49 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.59 13
Rhodanobacter denitrificans MT42 0.58 LRK55_RS02280 DNA repair protein RadA 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.83 48
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS02525 DNA repair protein RadA 0.50 LRK54_RS11805 ATP-dependent DNA helicase RecG low > 59
Acinetobacter baumannii LAC-4 0.58 RR41_RS04415 DNA repair protein RadA 0.52 RR41_RS02075 ATP-dependent DNA helicase RecG — —
Dyella japonica UNC79MFTsu3.2 0.57 ABZR86_RS08845 DNA repair protein RadA 0.51 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.84 3
Acinetobacter radioresistens SK82 0.57 MPMX26_02235 DNA repair protein RadA 0.52 MPMX26_02732 ATP-dependent DNA helicase RecG low > 36
Lysobacter sp. OAE881 0.57 ABIE51_RS07685 DNA repair protein RadA 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG low > 62
Methylophilus sp. DMC18 0.55 GFF1046 DNA repair protein RadA 0.45 GFF2125 ATP-dependent DNA helicase RecG low > 43
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS12030 DNA repair protein RadA 0.45 RR42_RS17390 ATP-dependent DNA helicase RecG — —
Paraburkholderia sabiae LMG 24235 0.54 QEN71_RS06320 DNA repair protein RadA 0.44 QEN71_RS26630 ATP-dependent DNA helicase RecG — —
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS11670 DNA repair protein RadA 0.45 ABZR87_RS01270 ATP-dependent DNA helicase RecG low > 80
Paraburkholderia graminis OAS925 0.53 ABIE53_002526 DNA repair protein RadA/Sms 0.44 ABIE53_000833 ATP-dependent DNA helicase RecG low > 113
Burkholderia phytofirmans PsJN 0.52 BPHYT_RS12235 DNA repair protein RadA 0.44 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.17 72
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS00210 DNA repair protein RadA 0.45 RALBFv3_RS05675 DNA helicase RecG low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS13540 DNA repair protein RadA 0.45 UW163_RS07950 DNA helicase RecG — —
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_00590 DNA replication and repair protein RadA 0.44 H281DRAFT_04672 ATP-dependent DNA helicase RecG low > 103
Ralstonia solanacearum GMI1000 0.52 RS_RS06880 DNA repair protein RadA 0.45 RS_RS13565 DNA helicase RecG — —
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS10745 DNA repair protein RadA 0.44 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.56 4
Ralstonia solanacearum PSI07 0.52 RPSI07_RS17270 DNA repair protein RadA 0.45 RPSI07_RS11625 DNA helicase RecG 0.33 19
Castellaniella sp019104865 MT123 0.51 ABCV34_RS02345 DNA repair protein RadA 0.41 ABCV34_RS03570 ATP-dependent DNA helicase RecG low > 48
Acidovorax sp. GW101-3H11 0.51 Ac3H11_3371 DNA repair protein RadA 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 79
Variovorax sp. SCN45 0.51 GFF5087 DNA repair protein RadA 0.38 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) low > 127
Variovorax sp. OAS795 0.51 ABID97_RS03770 DNA repair protein RadA 0.41 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.21 81
Dechlorosoma suillum PS 0.50 Dsui_2413 DNA repair protein RadA 0.42 Dsui_0311 ATP-dependent DNA helicase RecG 0.60 23
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF1833 DNA repair protein RadA 0.40 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 90
Bosea sp. OAE506 0.43 ABIE41_RS17800 DNA repair protein RadA 0.31 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.61 5
Echinicola vietnamensis KMM 6221, DSM 17526 0.42 Echvi_1031 DNA repair protein RadA 0.32 Echvi_1162 ATP-dependent DNA helicase RecG 0.70 5
Azospirillum brasilense Sp245 0.42 AZOBR_RS08320 DNA repair protein RadA 0.33 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.56 21
Pontibacter actiniarum KMM 6156, DSM 19842 0.42 CA264_17125 DNA repair protein RadA 0.31 CA264_15020 DNA helicase RecG 0.45 26
Rhodopseudomonas palustris CGA009 0.41 TX73_015980 DNA repair protein RadA 0.29 TX73_013795 ATP-dependent DNA helicase RecG 0.44 23
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS08395 DNA repair protein RadA 0.33 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG — —
Magnetospirillum magneticum AMB-1 0.41 AMB_RS10555 DNA repair protein RadA 0.34 AMB_RS12400 ATP-dependent DNA helicase RecG — —
Dinoroseobacter shibae DFL-12 0.41 Dshi_2129 DNA repair protein RadA (RefSeq) 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.53 14
Xanthobacter sp. DMC5 0.41 GFF1870 DNA repair protein RadA 0.29 GFF630 ATP-dependent DNA helicase RecG — —
Rhizobium sp. OAE497 0.41 ABIE40_RS06280 DNA repair protein RadA 0.34 ABIE40_RS09300 ATP-dependent DNA helicase RecG 0.36 33
Phaeobacter inhibens DSM 17395 0.41 PGA1_c10840 DNA repair protein RadA 0.32 PGA1_c14380 ATP-dependent DNA helicase RecG 0.35 16
Synechococcus elongatus PCC 7942 0.41 Synpcc7942_1452 radA DNA repair protein RadA 0.35 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG — —
Sphingobium sp. HT1-2 0.41 GFF1895 DNA repair protein RadA 0.33 GFF3604 ATP-dependent DNA helicase RecG (EC 3.6.4.12) low > 95
Azospirillum sp. SherDot2 0.41 MPMX19_00904 DNA repair protein RadA 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG — —
Phocaeicola vulgatus CL09T03C04 0.41 HMPREF1058_RS14715 DNA repair protein RadA 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG low > 67
Sinorhizobium meliloti 1021 0.41 SMc00556 DNA repair protein RadA 0.35 SMc00228 ATP-dependent DNA helicase RecG 0.71 1
Phocaeicola dorei CL03T12C01 0.40 ABI39_RS10420 DNA repair protein RadA 0.33 ABI39_RS02470 ATP-dependent DNA helicase RecG low > 72
Agrobacterium fabrum C58 0.40 Atu1077 DNA repair protein 0.33 Atu1780 ATP-dependent DNA helicase 0.54 4
Bacteroides thetaiotaomicron VPI-5482 0.40 BT2406 putative DNA repair protein (NCBI ptt file) 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS00075 DNA repair protein RadA 0.33 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG low > 56
Shewanella loihica PV-4 0.40 Shew_2807 DNA repair protein RadA (RefSeq) 0.65 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.44 34
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS20495 DNA repair protein RadA 0.29 ABZR88_RS17240 ATP-dependent DNA helicase RecG low > 71
Caulobacter crescentus NA1000 Δfur 0.40 CCNA_01732 DNA repair protein RadA 0.33 CCNA_01504 ATP-dependent DNA helicase recG low > 67
Caulobacter crescentus NA1000 0.40 CCNA_01732 DNA repair protein RadA 0.33 CCNA_01504 ATP-dependent DNA helicase recG low > 66
Rhodospirillum rubrum S1H 0.39 Rru_A0406 DNA repair protein RadA (NCBI) 0.29 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) — —
Cellulophaga baltica 18 0.39 M666_RS03595 DNA repair protein RadA 0.32 M666_RS15340 ATP-dependent DNA helicase RecG 0.45 14
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS22660 DNA repair protein RadA 0.30 CA265_RS22835 ATP-dependent DNA helicase RecG 0.47 11
Sphingomonas koreensis DSMZ 15582 0.38 Ga0059261_0751 DNA repair protein RadA 0.31 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.60 4
Brevundimonas sp. GW460-12-10-14-LB2 0.38 A4249_RS03745 DNA repair protein RadA 0.30 A4249_RS04765 ATP-dependent DNA helicase RecG low > 48
Fusobacterium nucleatum SB010 0.33 HUW76_02270 DNA repair protein RadA 0.32 HUW76_01465 ATP-dependent DNA helicase RecG low > 35

Not shown: 6 genomes with orthologs for CSW01_11870 only; 0 genomes with orthologs for CSW01_13680 only