Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | 1.0 | CSW01_12735 | | RidA family protein | 0.80 | 18 |
Dickeya dadantii 3937 | 0.62 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | 0.74 | DDA3937_RS01915 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 74 |
Dickeya dianthicola 67-19 | 0.61 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | 0.74 | HGI48_RS01890 | | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
Pectobacterium carotovorum WPP14 | 0.61 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | 0.72 | HER17_RS19520 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 75 |
Dickeya dianthicola ME23 | 0.61 | DZA65_RS18435 | | YggS family pyridoxal phosphate-dependent enzyme | 0.75 | DZA65_RS01960 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 75 |
Klebsiella michiganensis M5al | 0.60 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | 0.78 | BWI76_RS02985 | | reactive intermediate/imine deaminase | low | > 92 |
Enterobacter asburiae PDN3 | 0.59 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | 0.77 | EX28DRAFT_3444 | | reactive intermediate/imine deaminase | 0.61 | 49 |
Pantoea sp. MT58 | 0.58 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | 0.78 | IAI47_16870 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 76 |
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.58 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.76 | GFF928 | | Endoribonuclease L-PSP | 0.81 | 36 |
Escherichia coli ECRC100 | 0.58 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | OKFHMN_11875 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 80 |
Escherichia fergusonii Becca | 0.58 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | 0.81 | EFB2_04290 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 86 |
Escherichia coli ECRC101 | 0.58 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | MCAODC_02380 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 87 |
Escherichia coli HS(pFamp)R (ATCC 700891) | 0.58 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | 0.81 | OHPLBJKB_03791 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 73 |
Escherichia coli ECOR27 | 0.58 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | NOLOHH_04135 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 75 |
Escherichia coli Nissle 1917 | 0.58 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | 0.81 | ECOLIN_RS24615 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 55 |
Escherichia coli BL21 | 0.58 | ECD_02781 | | UPF0001 family protein, PLP-binding | 0.81 | ECD_04111 | | enamine/imine deaminase, reaction intermediate detoxification | 0.54 | 31 |
Escherichia coli ECRC62 | 0.58 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | BNILDI_07375 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 75 |
Escherichia coli ECOR38 | 0.58 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | HEPCGN_10070 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 87 |
Escherichia coli ECRC99 | 0.58 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | KEDOAH_16280 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
Escherichia coli BW25113 | 0.58 | b2951 | yggS | predicted enzyme (NCBI) | 0.81 | b4243 | yjgF | orf, hypothetical protein (VIMSS) | low | > 76 |
Escherichia coli ECRC98 | 0.58 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | JDDGAC_15515 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 86 |
Escherichia coli ECRC102 | 0.58 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | NIAGMN_09725 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
Rahnella sp. WP5 | 0.57 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | 0.74 | EX31_RS12775 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 89 |
Shewanella oneidensis MR-1 | 0.56 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | 0.39 | SO1404 | | endoribonuclease L-PSP, putative (NCBI ptt file) | low | > 76 |
Shewanella sp. ANA-3 | 0.56 | Shewana3_1194 | | hypothetical protein (RefSeq) | 0.41 | Shewana3_2971 | | putative endoribonuclease L-PSP (RefSeq) | low | > 73 |
Serratia liquefaciens MT49 | 0.56 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | 0.69 | IAI46_02265 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 86 |
Enterobacter sp. TBS_079 | 0.56 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | 0.79 | MPMX20_00542 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 85 |
Erwinia tracheiphila SCR3 | 0.55 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | 0.73 | LU632_RS20960 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 74 |
Shewanella loihica PV-4 | 0.55 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | 0.41 | Shew_3500 | | putative endoribonuclease L-PSP (RefSeq) | low | > 60 |
Erwinia amylovora T8 | 0.55 | OLJFJH_08530 | | YggS family pyridoxal phosphate enzyme | 0.74 | OLJFJH_07320 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 58 |
Herbaspirillum seropedicae SmR1 | 0.53 | HSERO_RS18995 | | hypothetical protein | 0.22 | HSERO_RS05705 | | endoribonuclease L-PSP | low | > 78 |
Dechlorosoma suillum PS | 0.53 | Dsui_0603 | | pyridoxal phosphate enzyme, YggS family | 0.37 | Dsui_0312 | | endoribonuclease L-PSP, putative | — | — |
Pseudomonas sp. DMC3 | 0.52 | GFF209 | | Pyridoxal phosphate homeostasis protein | 0.43 | GFF420 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 89 |
Pseudomonas fluorescens GW456-L13 | 0.52 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.43 | PfGW456L13_779 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | 0.32 | 53 |
Pseudomonas fluorescens FW300-N2C3 | 0.51 | AO356_13425 | | hypothetical protein | 0.43 | AO356_12475 | | reactive intermediate/imine deaminase | low | > 104 |
Pseudomonas fluorescens FW300-N1B4 | 0.51 | Pf1N1B4_2342 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.43 | Pf1N1B4_2112 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | — | — |
Burkholderia phytofirmans PsJN | 0.51 | BPHYT_RS03495 | | hypothetical protein | 0.24 | BPHYT_RS34350 | | endoribonuclease L-PSP | low | > 109 |
Variovorax sp. OAS795 | 0.50 | ABID97_RS00250 | | YggS family pyridoxal phosphate-dependent enzyme | 0.31 | ABID97_RS22895 | | RidA family protein | — | — |
Pseudomonas simiae WCS417 | 0.50 | PS417_26725 | | hypothetical protein | 0.42 | PS417_27835 | | endoribonuclease | 0.41 | 2 |
Pseudomonas sp. S08-1 | 0.50 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | 0.40 | OH686_13545 | | RidA/YER057c/UK114 superfamily protein | low | > 80 |
Variovorax sp. SCN45 | 0.50 | GFF3744 | | Pyridoxal phosphate-containing protein YggS | 0.31 | GFF6707 | | RidA/YER057c/UK114 superfamily protein | — | — |
Cupriavidus basilensis FW507-4G11 | 0.50 | RR42_RS17355 | | hypothetical protein | 0.29 | RR42_RS30085 | | hypothetical protein | low | > 128 |
Paraburkholderia graminis OAS925 | 0.50 | ABIE53_000841 | | pyridoxal phosphate enzyme (YggS family) | 0.26 | ABIE53_004706 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 113 |
Pseudomonas sp. BP01 | 0.50 | JOY50_RS20910 | | YggS family pyridoxal phosphate-dependent enzyme | 0.42 | JOY50_RS08980 | | RidA family protein | low | > 84 |
Pseudomonas fluorescens FW300-N2E2 | 0.49 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.44 | Pf6N2E2_4360 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | low | > 103 |
Paraburkholderia bryophila 376MFSha3.1 | 0.49 | H281DRAFT_04680 | | hypothetical protein | 0.25 | H281DRAFT_03549 | | reactive intermediate/imine deaminase | low | > 103 |
Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS26595 | | YggS family pyridoxal phosphate-dependent enzyme | 0.40 | QEN71_RS41190 | | RidA family protein | — | — |
Pseudomonas putida KT2440 | 0.49 | PP_5094 | | putative enzyme with PLP binding domain | 0.42 | PP_5303 | | aminoacrylate/iminopropionate hydrolase/deaminase | low | > 96 |
Alteromonas macleodii MIT1002 | 0.49 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | 0.37 | MIT1002_00109 | | Putative reactive intermediate deaminase TdcF | 0.40 | 42 |
Pseudomonas syringae pv. syringae B728a | 0.49 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.42 | Psyr_0208 | | endoribonuclease L-PSP | low | > 86 |
Pseudomonas sp. RS175 | 0.49 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | 0.42 | PFR28_04425 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 88 |
Pseudomonas fluorescens SBW25-INTG | 0.49 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.42 | PFLU_RS29515 | | RidA family protein | 0.18 | 91 |
Pseudomonas syringae pv. syringae B728a ΔmexB | 0.49 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.42 | Psyr_0208 | | endoribonuclease L-PSP | low | > 86 |
Pseudomonas stutzeri RCH2 | 0.49 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | 0.41 | Psest_3818 | | endoribonuclease L-PSP, putative | 0.59 | 1 |
Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.49 | GFF2722 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.27 | GFF3622 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | low | > 90 |
Pseudomonas fluorescens SBW25 | 0.49 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.42 | PFLU_RS29515 | | RidA family protein | low | > 109 |
Shewanella amazonensis SB2B | 0.48 | Sama_2477 | | hypothetical protein (RefSeq) | 0.39 | Sama_0263 | | YjgF-like protein (RefSeq) | low | > 62 |
Pseudomonas aeruginosa PA14 | 0.47 | IKLFDK_23450 | | Pyridoxal phosphate homeostasis protein | 0.43 | IKLFDK_26760 | | reactive intermediate/imine deaminase | low | > 101 |
Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_08160 | | hypothetical protein | 0.43 | AO353_09285 | | reactive intermediate/imine deaminase | low | > 101 |
Pseudomonas sp. SVBP6 | 0.47 | COO64_RS13000 | | YggS family pyridoxal phosphate-dependent enzyme | 0.43 | COO64_RS01560 | | RidA family protein | low | > 93 |
Acinetobacter radioresistens SK82 | 0.47 | MPMX26_02404 | | Pyridoxal phosphate homeostasis protein | 0.40 | MPMX26_02797 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 36 |
Ralstonia sp. UNC404CL21Col | 0.46 | ABZR87_RS01225 | | YggS family pyridoxal phosphate-dependent enzyme | 0.21 | ABZR87_RS17675 | | RidA family protein | low | > 80 |
Ralstonia solanacearum GMI1000 | 0.45 | RS_RS13435 | | YggS family pyridoxal phosphate-dependent enzyme | 0.29 | RS_RS23660 | | RidA family protein | — | — |
Kangiella aquimarina DSM 16071 | 0.44 | B158DRAFT_0196 | | pyridoxal phosphate enzyme, YggS family | 0.39 | B158DRAFT_0573 | | endoribonuclease L-PSP, putative | low | > 40 |
Ralstonia solanacearum IBSBF1503 | 0.44 | RALBFv3_RS05575 | | YggS family pyridoxal phosphate-dependent enzyme | 0.34 | RALBFv3_RS20925 | | endoribonuclease L-PSP | low | > 76 |
Ralstonia solanacearum UW163 | 0.44 | UW163_RS08050 | | YggS family pyridoxal phosphate-dependent enzyme | 0.34 | UW163_RS22060 | | endoribonuclease L-PSP | — | — |
Methylophilus sp. DMC18 | 0.44 | GFF864 | | Pyridoxal phosphate homeostasis protein | 0.46 | GFF1301 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 43 |
Marinobacter adhaerens HP15 | 0.42 | HP15_288 | | alanine racemase domain protein | 0.43 | HP15_306 | | YjgF-like protein | low | > 73 |
Lysobacter sp. OAE881 | 0.40 | ABIE51_RS16060 | | YggS family pyridoxal phosphate-dependent enzyme | 0.47 | ABIE51_RS17260 | | RidA family protein | 0.48 | 31 |
Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.1711.1 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.50 | Xcc-8004.1205.1 | | hypothetical protein | low | > 74 |
Azospirillum brasilense Sp245 | 0.32 | AZOBR_RS01870 | | alanine racemase | 0.44 | AZOBR_RS32435 | | dfrA | — | — |
Rhodopseudomonas palustris CGA009 | 0.31 | TX73_014475 | | YggS family pyridoxal phosphate-dependent enzyme | 0.20 | TX73_004470 | | RidA family protein | low | > 86 |
Agrobacterium fabrum C58 | 0.31 | Atu2747 | | hypothetical protein | 0.24 | Atu3926 | | translation initiation inhibitor | low | > 89 |
Azospirillum sp. SherDot2 | 0.30 | MPMX19_00050 | | Pyridoxal phosphate homeostasis protein | 0.26 | MPMX19_04018 | | 2-aminomuconate deaminase | low | > 112 |
Desulfovibrio vulgaris Hildenborough JW710 | 0.30 | DVU0051 | | conserved hypothetical protein TIGR00044 (TIGR) | 0.49 | DVU2203 | | endoribonuclease, L-PSP family (TIGR) | low | > 55 |
Desulfovibrio vulgaris Miyazaki F | 0.30 | DvMF_2208 | | alanine racemase domain protein (RefSeq) | 0.34 | DvMF_1512 | | endoribonuclease L-PSP (RefSeq) | — | — |
Rhizobium sp. OAE497 | 0.29 | ABIE40_RS19180 | | YggS family pyridoxal phosphate-dependent enzyme | 0.25 | ABIE40_RS21405 | | RidA family protein | — | — |
Dinoroseobacter shibae DFL-12 | 0.29 | Dshi_0042 | | alanine racemase domain protein (RefSeq) | 0.29 | Dshi_0720 | | Endoribonuclease L-PSP (RefSeq) | low | > 64 |
Bosea sp. OAE506 | 0.29 | ABIE41_RS04720 | | YggS family pyridoxal phosphate-dependent enzyme | 0.19 | ABIE41_RS17300 | | RidA family protein | — | — |
Pedobacter sp. GW460-11-11-14-LB5 | 0.29 | CA265_RS06285 | | YggS family pyridoxal phosphate enzyme | 0.43 | CA265_RS22825 | | reactive intermediate/imine deaminase | low | > 88 |
Cellulophaga baltica 18 | 0.29 | M666_RS17595 | | YggS family pyridoxal phosphate-dependent enzyme | 0.48 | M666_RS12150 | | RidA family protein | low | > 67 |
Castellaniella sp019104865 MT123 | 0.29 | ABCV34_RS02955 | | YggS family pyridoxal phosphate-dependent enzyme | 0.39 | ABCV34_RS03565 | | Rid family detoxifying hydrolase | — | — |
Sinorhizobium meliloti 1021 | 0.28 | SMc02812 | | hypothetical protein | 0.24 | SM_b21139 | | translation initiation inhibitors | low | > 103 |
Fusobacterium nucleatum SB010 | 0.27 | HUW76_07280 | | YggS family pyridoxal phosphate-dependent enzyme | 0.47 | HUW76_10065 | | RidA family protein | low | > 35 |
Rhodanobacter denitrificans MT42 | 0.27 | LRK55_RS02655 | | YggS family pyridoxal phosphate-dependent enzyme | 0.41 | LRK55_RS11525 | | RidA family protein | low | > 63 |
Rhodanobacter denitrificans FW104-10B01 | 0.27 | LRK54_RS02905 | | YggS family pyridoxal phosphate-dependent enzyme | 0.41 | LRK54_RS11800 | | RidA family protein | low | > 59 |
Parabacteroides merdae CL09T00C40 | 0.27 | HMPREF1078_RS15965 | | YggS family pyridoxal phosphate-dependent enzyme | 0.45 | HMPREF1078_RS02020 | | RidA family protein | low | > 61 |
Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.27 | ABZR88_RS11740 | | YggS family pyridoxal phosphate-dependent enzyme | 0.39 | ABZR88_RS17245 | | RidA family protein | — | — |
Rhodanobacter sp000427505 FW510-R12 | 0.27 | LRK53_RS07085 | | YggS family pyridoxal phosphate-dependent enzyme | 0.40 | LRK53_RS16740 | | RidA family protein | low | > 60 |
Bacteroides thetaiotaomicron VPI-5482 | 0.27 | BT1332 | | conserved hypothetical protein (NCBI ptt file) | 0.50 | BT1336 | | putative translation initiation inhibitor (NCBI ptt file) | low | > 81 |
Dyella japonica UNC79MFTsu3.2 | 0.27 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | 0.45 | ABZR86_RS11845 | | RidA family protein | — | — |
Phocaeicola vulgatus CL09T03C04 | 0.26 | HMPREF1058_RS06240 | | YggS family pyridoxal phosphate-dependent enzyme | 0.48 | HMPREF1058_RS18400 | | RidA family protein | low | > 67 |
Caulobacter crescentus NA1000 Δfur | 0.26 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | 0.22 | CCNA_02886 | | RutC-family pyrimidine utilization protein C | low | > 67 |
Phocaeicola dorei CL03T12C01 | 0.26 | ABI39_RS20000 | | YggS family pyridoxal phosphate-dependent enzyme | 0.47 | ABI39_RS14715 | | RidA family protein | low | > 72 |
Bifidobacterium breve UCC2003 | 0.26 | BBR_RS11570 | | YggS family pyridoxal phosphate-dependent enzyme | 0.29 | BBR_RS12070 | | endoribonuclease L-PSP | low | > 34 |
Echinicola vietnamensis KMM 6221, DSM 17526 | 0.26 | Echvi_2233 | | pyridoxal phosphate enzyme, YggS family | 0.43 | Echvi_1327 | | endoribonuclease L-PSP, putative | 0.50 | 6 |
Caulobacter crescentus NA1000 | 0.26 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | 0.22 | CCNA_02886 | | RutC-family pyrimidine utilization protein C | low | > 66 |
Pontibacter actiniarum KMM 6156, DSM 19842 | 0.26 | CA264_06410 | | YggS family pyridoxal phosphate enzyme | 0.38 | CA264_17590 | | RidA family protein | 0.61 | 19 |
Synechococcus elongatus PCC 7942 | 0.25 | Synpcc7942_2060 | ylmE | hypothetical protein | 0.46 | Synpcc7942_0972 | | YjgF-like protein | low | > 38 |
Synechocystis sp000284455 PCC 6803 | 0.25 | SGL_RS16960 | | YggS family pyridoxal phosphate-dependent enzyme | 0.46 | SGL_RS16325 | | RidA family protein | 0.65 | 11 |
Rhodanobacter sp. FW510-T8 | 0.25 | OKGIIK_09885 | | Pyridoxal phosphate homeostasis protein | 0.41 | OKGIIK_12095 | ridA | reactive intermediate/imine deaminase | low | > 52 |
Bacteroides stercoris CC31F | 0.24 | HMPREF1181_RS10865 | | YggS family pyridoxal phosphate-dependent enzyme | 0.48 | HMPREF1181_RS10885 | | RidA family protein | low | > 56 |
Bacteroides ovatus ATCC 8483 | 0.24 | BACOVA_00593 | | pyridoxal phosphate enzyme, YggS family | 0.50 | BACOVA_00589 | | putative endoribonuclease L-PSP | low | > 94 |
Sphingomonas koreensis DSMZ 15582 | 0.22 | Ga0059261_2216 | | pyridoxal phosphate enzyme, YggS family | 0.20 | Ga0059261_1670 | | Putative translation initiation inhibitor, yjgF family | low | > 68 |
Not shown: 8 genomes with orthologs for CSW01_02455 only; 0 genomes with orthologs for CSW01_12735 only