Conservation of cofitness between CSW01_02455 and CSW01_12735 in Vibrio cholerae E7946 ATCC 55056

103 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02455 YggS family pyridoxal phosphate enzyme 1.0 CSW01_12735 RidA family protein 0.80 18
Dickeya dadantii 3937 0.62 DDA3937_RS17300 YggS family pyridoxal phosphate-dependent enzyme 0.74 DDA3937_RS01915 2-iminobutanoate/2-iminopropanoate deaminase low > 74
Dickeya dianthicola 67-19 0.61 HGI48_RS17345 YggS family pyridoxal phosphate-dependent enzyme 0.74 HGI48_RS01890 2-iminobutanoate/2-iminopropanoate deaminase
Pectobacterium carotovorum WPP14 0.61 HER17_RS03810 YggS family pyridoxal phosphate-dependent enzyme 0.72 HER17_RS19520 2-iminobutanoate/2-iminopropanoate deaminase low > 75
Dickeya dianthicola ME23 0.61 DZA65_RS18435 YggS family pyridoxal phosphate-dependent enzyme 0.75 DZA65_RS01960 2-iminobutanoate/2-iminopropanoate deaminase low > 75
Klebsiella michiganensis M5al 0.60 BWI76_RS24100 YggS family pyridoxal phosphate enzyme 0.78 BWI76_RS02985 reactive intermediate/imine deaminase low > 92
Enterobacter asburiae PDN3 0.59 EX28DRAFT_2989 pyridoxal phosphate enzyme, YggS family 0.77 EX28DRAFT_3444 reactive intermediate/imine deaminase 0.61 49
Pantoea sp. MT58 0.58 IAI47_03595 YggS family pyridoxal phosphate-dependent enzyme 0.78 IAI47_16870 2-iminobutanoate/2-iminopropanoate deaminase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF3054 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.76 GFF928 Endoribonuclease L-PSP 0.81 36
Escherichia coli ECRC100 0.58 OKFHMN_19255 yggS pyridoxal phosphate homeostasis protein 0.81 OKFHMN_11875 ridA 2-iminobutanoate/2-iminopropanoate deaminase low > 80
Escherichia fergusonii Becca 0.58 EFB2_00951 Pyridoxal phosphate homeostasis protein 0.81 EFB2_04290 2-iminobutanoate/2-iminopropanoate deaminase low > 86
Escherichia coli ECRC101 0.58 MCAODC_09775 yggS pyridoxal phosphate homeostasis protein 0.81 MCAODC_02380 ridA 2-iminobutanoate/2-iminopropanoate deaminase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_00765 Pyridoxal phosphate homeostasis protein 0.81 OHPLBJKB_03791 2-iminobutanoate/2-iminopropanoate deaminase low > 73
Escherichia coli ECOR27 0.58 NOLOHH_11125 yggS pyridoxal phosphate homeostasis protein 0.81 NOLOHH_04135 ridA 2-iminobutanoate/2-iminopropanoate deaminase low > 75
Escherichia coli Nissle 1917 0.58 ECOLIN_RS16415 pyridoxal phosphate homeostasis protein 0.81 ECOLIN_RS24615 2-iminobutanoate/2-iminopropanoate deaminase low > 55
Escherichia coli BL21 0.58 ECD_02781 UPF0001 family protein, PLP-binding 0.81 ECD_04111 enamine/imine deaminase, reaction intermediate detoxification 0.54 31
Escherichia coli ECRC62 0.58 BNILDI_09705 yggS pyridoxal phosphate homeostasis protein 0.81 BNILDI_07375 ridA 2-iminobutanoate/2-iminopropanoate deaminase low > 75
Escherichia coli ECOR38 0.58 HEPCGN_18560 yggS pyridoxal phosphate homeostasis protein 0.81 HEPCGN_10070 ridA 2-iminobutanoate/2-iminopropanoate deaminase low > 87
Escherichia coli ECRC99 0.58 KEDOAH_08885 yggS pyridoxal phosphate homeostasis protein 0.81 KEDOAH_16280 ridA 2-iminobutanoate/2-iminopropanoate deaminase
Escherichia coli BW25113 0.58 b2951 yggS predicted enzyme (NCBI) 0.81 b4243 yjgF orf, hypothetical protein (VIMSS) low > 76
Escherichia coli ECRC98 0.58 JDDGAC_22885 yggS pyridoxal phosphate homeostasis protein 0.81 JDDGAC_15515 ridA 2-iminobutanoate/2-iminopropanoate deaminase low > 86
Escherichia coli ECRC102 0.58 NIAGMN_17020 yggS pyridoxal phosphate homeostasis protein 0.81 NIAGMN_09725 ridA 2-iminobutanoate/2-iminopropanoate deaminase
Rahnella sp. WP5 0.57 EX31_RS02685 YggS family pyridoxal phosphate-dependent enzyme 0.74 EX31_RS12775 2-iminobutanoate/2-iminopropanoate deaminase low > 89
Shewanella oneidensis MR-1 0.56 SO3352 conserved hypothetical protein TIGR00044 (NCBI ptt file) 0.39 SO1404 endoribonuclease L-PSP, putative (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_1194 hypothetical protein (RefSeq) 0.41 Shewana3_2971 putative endoribonuclease L-PSP (RefSeq) low > 73
Serratia liquefaciens MT49 0.56 IAI46_21410 YggS family pyridoxal phosphate-dependent enzyme 0.69 IAI46_02265 2-iminobutanoate/2-iminopropanoate deaminase low > 86
Enterobacter sp. TBS_079 0.56 MPMX20_03809 Pyridoxal phosphate homeostasis protein 0.79 MPMX20_00542 2-iminobutanoate/2-iminopropanoate deaminase low > 85
Erwinia tracheiphila SCR3 0.55 LU632_RS05460 YggS family pyridoxal phosphate-dependent enzyme 0.73 LU632_RS20960 ridA 2-iminobutanoate/2-iminopropanoate deaminase low > 74
Shewanella loihica PV-4 0.55 Shew_1137 alanine racemase domain-containing protein (RefSeq) 0.41 Shew_3500 putative endoribonuclease L-PSP (RefSeq) low > 60
Erwinia amylovora T8 0.55 OLJFJH_08530 YggS family pyridoxal phosphate enzyme 0.74 OLJFJH_07320 2-iminobutanoate/2-iminopropanoate deaminase low > 58
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS18995 hypothetical protein 0.22 HSERO_RS05705 endoribonuclease L-PSP low > 78
Dechlorosoma suillum PS 0.53 Dsui_0603 pyridoxal phosphate enzyme, YggS family 0.37 Dsui_0312 endoribonuclease L-PSP, putative
Pseudomonas sp. DMC3 0.52 GFF209 Pyridoxal phosphate homeostasis protein 0.43 GFF420 2-iminobutanoate/2-iminopropanoate deaminase low > 89
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_1011 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.43 PfGW456L13_779 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.32 53
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_13425 hypothetical protein 0.43 AO356_12475 reactive intermediate/imine deaminase low > 104
Pseudomonas fluorescens FW300-N1B4 0.51 Pf1N1B4_2342 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.43 Pf1N1B4_2112 Bona fide RidA/YjgF/TdcF/RutC subgroup
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS03495 hypothetical protein 0.24 BPHYT_RS34350 endoribonuclease L-PSP low > 109
Variovorax sp. OAS795 0.50 ABID97_RS00250 YggS family pyridoxal phosphate-dependent enzyme 0.31 ABID97_RS22895 RidA family protein
Pseudomonas simiae WCS417 0.50 PS417_26725 hypothetical protein 0.42 PS417_27835 endoribonuclease 0.41 2
Pseudomonas sp. S08-1 0.50 OH686_10975 Pyridoxal phosphate-containing protein YggS 0.40 OH686_13545 RidA/YER057c/UK114 superfamily protein low > 80
Variovorax sp. SCN45 0.50 GFF3744 Pyridoxal phosphate-containing protein YggS 0.31 GFF6707 RidA/YER057c/UK114 superfamily protein
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS17355 hypothetical protein 0.29 RR42_RS30085 hypothetical protein low > 128
Paraburkholderia graminis OAS925 0.50 ABIE53_000841 pyridoxal phosphate enzyme (YggS family) 0.26 ABIE53_004706 2-iminobutanoate/2-iminopropanoate deaminase low > 113
Pseudomonas sp. BP01 0.50 JOY50_RS20910 YggS family pyridoxal phosphate-dependent enzyme 0.42 JOY50_RS08980 RidA family protein low > 84
Pseudomonas fluorescens FW300-N2E2 0.49 Pf6N2E2_4601 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.44 Pf6N2E2_4360 Bona fide RidA/YjgF/TdcF/RutC subgroup low > 103
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_04680 hypothetical protein 0.25 H281DRAFT_03549 reactive intermediate/imine deaminase low > 103
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS26595 YggS family pyridoxal phosphate-dependent enzyme 0.40 QEN71_RS41190 RidA family protein
Pseudomonas putida KT2440 0.49 PP_5094 putative enzyme with PLP binding domain 0.42 PP_5303 aminoacrylate/iminopropionate hydrolase/deaminase low > 96
Alteromonas macleodii MIT1002 0.49 MIT1002_03061 pyridoxal phosphate enzyme, YggS family 0.37 MIT1002_00109 Putative reactive intermediate deaminase TdcF 0.40 42
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_0477 Protein of unknown function UPF0001 0.42 Psyr_0208 endoribonuclease L-PSP low > 86
Pseudomonas sp. RS175 0.49 PFR28_04242 Pyridoxal phosphate homeostasis protein 0.42 PFR28_04425 2-iminobutanoate/2-iminopropanoate deaminase low > 88
Pseudomonas fluorescens SBW25-INTG 0.49 PFLU_RS28370 YggS family pyridoxal phosphate-dependent enzyme 0.42 PFLU_RS29515 RidA family protein 0.18 91
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_0477 Protein of unknown function UPF0001 0.42 Psyr_0208 endoribonuclease L-PSP low > 86
Pseudomonas stutzeri RCH2 0.49 Psest_0284 pyridoxal phosphate enzyme, YggS family 0.41 Psest_3818 endoribonuclease L-PSP, putative 0.59 1
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF2722 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.27 GFF3622 Bona fide RidA/YjgF/TdcF/RutC subgroup low > 90
Pseudomonas fluorescens SBW25 0.49 PFLU_RS28370 YggS family pyridoxal phosphate-dependent enzyme 0.42 PFLU_RS29515 RidA family protein low > 109
Shewanella amazonensis SB2B 0.48 Sama_2477 hypothetical protein (RefSeq) 0.39 Sama_0263 YjgF-like protein (RefSeq) low > 62
Pseudomonas aeruginosa PA14 0.47 IKLFDK_23450 Pyridoxal phosphate homeostasis protein 0.43 IKLFDK_26760 reactive intermediate/imine deaminase low > 101
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_08160 hypothetical protein 0.43 AO353_09285 reactive intermediate/imine deaminase low > 101
Pseudomonas sp. SVBP6 0.47 COO64_RS13000 YggS family pyridoxal phosphate-dependent enzyme 0.43 COO64_RS01560 RidA family protein low > 93
Acinetobacter radioresistens SK82 0.47 MPMX26_02404 Pyridoxal phosphate homeostasis protein 0.40 MPMX26_02797 2-iminobutanoate/2-iminopropanoate deaminase low > 36
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS01225 YggS family pyridoxal phosphate-dependent enzyme 0.21 ABZR87_RS17675 RidA family protein low > 80
Ralstonia solanacearum GMI1000 0.45 RS_RS13435 YggS family pyridoxal phosphate-dependent enzyme 0.29 RS_RS23660 RidA family protein
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_0196 pyridoxal phosphate enzyme, YggS family 0.39 B158DRAFT_0573 endoribonuclease L-PSP, putative low > 40
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS05575 YggS family pyridoxal phosphate-dependent enzyme 0.34 RALBFv3_RS20925 endoribonuclease L-PSP low > 76
Ralstonia solanacearum UW163 0.44 UW163_RS08050 YggS family pyridoxal phosphate-dependent enzyme 0.34 UW163_RS22060 endoribonuclease L-PSP
Methylophilus sp. DMC18 0.44 GFF864 Pyridoxal phosphate homeostasis protein 0.46 GFF1301 2-iminobutanoate/2-iminopropanoate deaminase low > 43
Marinobacter adhaerens HP15 0.42 HP15_288 alanine racemase domain protein 0.43 HP15_306 YjgF-like protein low > 73
Lysobacter sp. OAE881 0.40 ABIE51_RS16060 YggS family pyridoxal phosphate-dependent enzyme 0.47 ABIE51_RS17260 RidA family protein 0.48 31
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.1711.1 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.50 Xcc-8004.1205.1 hypothetical protein low > 74
Azospirillum brasilense Sp245 0.32 AZOBR_RS01870 alanine racemase 0.44 AZOBR_RS32435 dfrA
Rhodopseudomonas palustris CGA009 0.31 TX73_014475 YggS family pyridoxal phosphate-dependent enzyme 0.20 TX73_004470 RidA family protein low > 86
Agrobacterium fabrum C58 0.31 Atu2747 hypothetical protein 0.24 Atu3926 translation initiation inhibitor low > 89
Azospirillum sp. SherDot2 0.30 MPMX19_00050 Pyridoxal phosphate homeostasis protein 0.26 MPMX19_04018 2-aminomuconate deaminase low > 112
Desulfovibrio vulgaris Hildenborough JW710 0.30 DVU0051 conserved hypothetical protein TIGR00044 (TIGR) 0.49 DVU2203 endoribonuclease, L-PSP family (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.30 DvMF_2208 alanine racemase domain protein (RefSeq) 0.34 DvMF_1512 endoribonuclease L-PSP (RefSeq)
Rhizobium sp. OAE497 0.29 ABIE40_RS19180 YggS family pyridoxal phosphate-dependent enzyme 0.25 ABIE40_RS21405 RidA family protein
Dinoroseobacter shibae DFL-12 0.29 Dshi_0042 alanine racemase domain protein (RefSeq) 0.29 Dshi_0720 Endoribonuclease L-PSP (RefSeq) low > 64
Bosea sp. OAE506 0.29 ABIE41_RS04720 YggS family pyridoxal phosphate-dependent enzyme 0.19 ABIE41_RS17300 RidA family protein
Pedobacter sp. GW460-11-11-14-LB5 0.29 CA265_RS06285 YggS family pyridoxal phosphate enzyme 0.43 CA265_RS22825 reactive intermediate/imine deaminase low > 88
Cellulophaga baltica 18 0.29 M666_RS17595 YggS family pyridoxal phosphate-dependent enzyme 0.48 M666_RS12150 RidA family protein low > 67
Castellaniella sp019104865 MT123 0.29 ABCV34_RS02955 YggS family pyridoxal phosphate-dependent enzyme 0.39 ABCV34_RS03565 Rid family detoxifying hydrolase
Sinorhizobium meliloti 1021 0.28 SMc02812 hypothetical protein 0.24 SM_b21139 translation initiation inhibitors low > 103
Fusobacterium nucleatum SB010 0.27 HUW76_07280 YggS family pyridoxal phosphate-dependent enzyme 0.47 HUW76_10065 RidA family protein low > 35
Rhodanobacter denitrificans MT42 0.27 LRK55_RS02655 YggS family pyridoxal phosphate-dependent enzyme 0.41 LRK55_RS11525 RidA family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.27 LRK54_RS02905 YggS family pyridoxal phosphate-dependent enzyme 0.41 LRK54_RS11800 RidA family protein low > 59
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS15965 YggS family pyridoxal phosphate-dependent enzyme 0.45 HMPREF1078_RS02020 RidA family protein low > 61
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS11740 YggS family pyridoxal phosphate-dependent enzyme 0.39 ABZR88_RS17245 RidA family protein
Rhodanobacter sp000427505 FW510-R12 0.27 LRK53_RS07085 YggS family pyridoxal phosphate-dependent enzyme 0.40 LRK53_RS16740 RidA family protein low > 60
Bacteroides thetaiotaomicron VPI-5482 0.27 BT1332 conserved hypothetical protein (NCBI ptt file) 0.50 BT1336 putative translation initiation inhibitor (NCBI ptt file) low > 81
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS09305 YggS family pyridoxal phosphate-dependent enzyme 0.45 ABZR86_RS11845 RidA family protein
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS06240 YggS family pyridoxal phosphate-dependent enzyme 0.48 HMPREF1058_RS18400 RidA family protein low > 67
Caulobacter crescentus NA1000 Δfur 0.26 CCNA_03861 pyridoxal 5'-phosphate dependent enzyme class III 0.22 CCNA_02886 RutC-family pyrimidine utilization protein C low > 67
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS20000 YggS family pyridoxal phosphate-dependent enzyme 0.47 ABI39_RS14715 RidA family protein low > 72
Bifidobacterium breve UCC2003 0.26 BBR_RS11570 YggS family pyridoxal phosphate-dependent enzyme 0.29 BBR_RS12070 endoribonuclease L-PSP low > 34
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_2233 pyridoxal phosphate enzyme, YggS family 0.43 Echvi_1327 endoribonuclease L-PSP, putative 0.50 6
Caulobacter crescentus NA1000 0.26 CCNA_03861 pyridoxal 5'-phosphate dependent enzyme class III 0.22 CCNA_02886 RutC-family pyrimidine utilization protein C low > 66
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_06410 YggS family pyridoxal phosphate enzyme 0.38 CA264_17590 RidA family protein 0.61 19
Synechococcus elongatus PCC 7942 0.25 Synpcc7942_2060 ylmE hypothetical protein 0.46 Synpcc7942_0972 YjgF-like protein low > 38
Synechocystis sp000284455 PCC 6803 0.25 SGL_RS16960 YggS family pyridoxal phosphate-dependent enzyme 0.46 SGL_RS16325 RidA family protein 0.65 11
Rhodanobacter sp. FW510-T8 0.25 OKGIIK_09885 Pyridoxal phosphate homeostasis protein 0.41 OKGIIK_12095 ridA reactive intermediate/imine deaminase low > 52
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS10865 YggS family pyridoxal phosphate-dependent enzyme 0.48 HMPREF1181_RS10885 RidA family protein low > 56
Bacteroides ovatus ATCC 8483 0.24 BACOVA_00593 pyridoxal phosphate enzyme, YggS family 0.50 BACOVA_00589 putative endoribonuclease L-PSP low > 94
Sphingomonas koreensis DSMZ 15582 0.22 Ga0059261_2216 pyridoxal phosphate enzyme, YggS family 0.20 Ga0059261_1670 Putative translation initiation inhibitor, yjgF family low > 68

Not shown: 8 genomes with orthologs for CSW01_02455 only; 0 genomes with orthologs for CSW01_12735 only