Conservation of cofitness between CSW01_01045 and CSW01_12250 in Vibrio cholerae E7946 ATCC 55056

112 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01045 DNA helicase RecQ 1.0 CSW01_12250 site-specific tyrosine recombinase XerD 0.66 10
Klebsiella pneumoniae MKP103 0.67 KDGMDA_09735 ATP-dependent DNA helicase RecQ 0.68 KDGMDA_04300 site-specific tyrosine recombinase XerD low > 95
Escherichia coli ECRC100 0.67 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 0.67 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC99 0.67 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 0.67 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC101 0.67 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 0.67 MCAODC_10090 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC98 0.67 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 0.67 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC62 0.67 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 0.67 BNILDI_10025 xerD site-specific tyrosine recombinase XerD low > 75
Escherichia coli ECOR27 0.67 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 0.67 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD low > 76
Escherichia coli ECRC102 0.67 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 0.67 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECOR38 0.67 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 0.68 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD 0.51 15
Escherichia coli BW25113 0.67 b3822 recQ ATP-dependent DNA helicase (NCBI) 0.67 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) low > 76
Escherichia coli Nissle 1917 0.67 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 0.67 ECOLIN_RS16125 site-specific tyrosine recombinase XerD low > 55
Escherichia fergusonii Becca 0.67 EFB2_04815 ATP-dependent DNA helicase RecQ 0.67 EFB2_01007 Tyrosine recombinase XerD low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 0.67 OHPLBJKB_00821 Tyrosine recombinase XerD low > 74
Pantoea sp. MT58 0.67 IAI47_18360 ATP-dependent DNA helicase RecQ 0.69 IAI47_03820 site-specific tyrosine recombinase XerD low > 76
Escherichia coli BL21 0.66 ECD_03701 ATP-dependent DNA helicase 0.67 ECD_02726 site-specific tyrosine recombinase low > 61
Klebsiella michiganensis M5al 0.66 BWI76_RS01245 DNA helicase RecQ 0.68 BWI76_RS23815 site-specific tyrosine recombinase XerD — —
Erwinia tracheiphila SCR3 0.66 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.70 LU632_RS05975 xerD site-specific tyrosine recombinase XerD — —
Dickeya dianthicola 67-19 0.66 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.68 HGI48_RS03440 site-specific tyrosine recombinase XerD low > 71
Serratia liquefaciens MT49 0.66 IAI46_00770 ATP-dependent DNA helicase RecQ 0.69 IAI46_20730 site-specific tyrosine recombinase XerD low > 87
Pantoea agglomerans CFBP13505 P0401 0.66 PagCFBP13505_RS15340 ATP-dependent DNA helicase RecQ 0.69 PagCFBP13505_RS15880 site-specific tyrosine recombinase XerD low > 74
Dickeya dianthicola ME23 0.66 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.68 DZA65_RS03485 site-specific tyrosine recombinase XerD — —
Erwinia amylovora T8 0.66 OLJFJH_06445 ATP-dependent DNA helicase RecQ 0.70 OLJFJH_08835 site-specific tyrosine recombinase XerD low > 58
Dickeya dadantii 3937 0.66 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.68 DDA3937_RS03300 site-specific tyrosine recombinase XerD low > 74
Erwinia tracheiphila HP pepo 2.2 0.66 IJEDHG_08740 recQ ATP-dependent DNA helicase RecQ 0.71 IJEDHG_03195 xerD site-specific tyrosine recombinase XerD — —
Enterobacter asburiae PDN3 0.66 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.68 EX28DRAFT_2945 tyrosine recombinase XerD low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.68 MPMX20_03753 Tyrosine recombinase XerD low > 85
Rahnella sp. WP5 0.65 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.70 EX31_RS13480 site-specific tyrosine recombinase XerD low > 89
Pectobacterium carotovorum WPP14 0.65 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.71 HER17_RS17890 site-specific tyrosine recombinase XerD 0.48 35
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF248 ATP-dependent DNA helicase RecQ 0.67 GFF2991 Tyrosine recombinase XerD 0.47 46
Shewanella sp. ANA-3 0.59 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.56 Shewana3_3331 tyrosine recombinase XerD (RefSeq) low > 73
Shewanella oneidensis MR-1 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.56 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.58 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.54 Shew_0770 tyrosine recombinase XerD (RefSeq) low > 60
Shewanella amazonensis SB2B 0.57 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.55 Sama_2739 integrase/recombinase XerD (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.54 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.55 MIT1002_00786 Tyrosine recombinase XerD low > 70
Xanthobacter sp. DMC5 0.47 GFF753 ATP-dependent DNA helicase RecQ 0.35 GFF3081 Tyrosine recombinase XerD — —
Pseudomonas sp. SVBP6 0.46 COO64_RS21845 recQ DNA helicase RecQ 0.58 COO64_RS04910 xerD site-specific tyrosine recombinase XerD low > 93
Pseudomonas aeruginosa PUPa3 0.45 DQ20_RS40870 recQ;go_function=DNA DNA helicase RecQ 0.56 DQ20_RS42845 xerD;go_function=site-specific site-specific tyrosine recombinase XerD 0.27 84
Pseudomonas aeruginosa PA14 0.45 IKLFDK_17145 DNA helicase RecQ 0.56 IKLFDK_19085 site-specific tyrosine recombinase XerD — —
Pseudomonas aeruginosa MRSN321 0.45 DY961_RS00140 recQ;go_function=DNA DNA helicase RecQ 0.56 DY961_RS14280 xerD;go_function=site-specific site-specific tyrosine recombinase XerD low > 100
Pseudomonas sp. RS175 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ 0.58 PFR28_00331 Tyrosine recombinase XerD low > 88
Marinobacter adhaerens HP15 0.45 HP15_1718 ATP-dependent DNA helicase RecQ 0.53 HP15_762 site-specific tyrosine recombinase XerD low > 73
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.58 PfGW456L13_1721 Tyrosine recombinase XerD low > 87
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04050 ATP-dependent DNA helicase RecQ 0.58 AO356_06385 recombinase XerD low > 104
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS19925 DNA helicase RecQ 0.46 ABZR86_RS19225 site-specific tyrosine recombinase XerD low > 74
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS13000 DNA helicase RecQ 0.44 LRK54_RS04735 site-specific tyrosine recombinase XerD low > 59
Pseudomonas sp. S08-1 0.45 OH686_20670 ATP-dependent DNA helicase RecQ 0.56 OH686_17750 tyrosine recombinase XerD low > 80
Pseudomonas segetis P6 0.45 MPMX49_02936 ATP-dependent DNA helicase RecQ 0.55 MPMX49_01575 Tyrosine recombinase XerD low > 75
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.58 Pf6N2E2_3145 Tyrosine recombinase XerD — —
Rhodanobacter denitrificans MT42 0.45 LRK55_RS12700 DNA helicase RecQ 0.44 LRK55_RS04515 site-specific tyrosine recombinase XerD low > 63
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.57 Pf1N1B4_3011 Tyrosine recombinase XerD low > 87
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_07560 DNA helicase RecQ 0.34 CA264_00850 site-specific tyrosine recombinase XerD — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.57 Psyr_1286 tyrosine recombinase XerD subunit low > 86
Pseudomonas sp. BP01 0.44 JOY50_RS01155 recQ DNA helicase RecQ 0.58 JOY50_RS11700 xerD site-specific tyrosine recombinase XerD low > 84
Pseudomonas sp. DMC3 0.44 GFF2380 ATP-dependent DNA helicase RecQ 0.58 GFF1987 Tyrosine recombinase XerD low > 89
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.57 Psyr_1286 tyrosine recombinase XerD subunit low > 86
Pseudomonas putida KT2440 0.44 PP_4516 ATP-dependent DNA 3 0.58 PP_1468 Tyrosine recombinase XerD 0.17 56
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_18430 ATP-dependent DNA helicase RecQ 0.58 AO353_04365 recombinase XerD low > 101
Rhodanobacter sp000427505 FW510-R12 0.44 LRK53_RS15600 DNA helicase RecQ 0.43 LRK53_RS05285 site-specific tyrosine recombinase XerD low > 59
Pseudomonas orientalis W4I3 0.44 QF045_RS22070 DNA helicase RecQ 0.56 QF045_RS25085 site-specific tyrosine recombinase XerD low > 93
Pseudomonas simiae WCS417 0.44 PS417_19950 ATP-dependent DNA helicase RecQ 0.57 PS417_22895 tyrosine recombinase XerD low > 88
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS21920 DNA helicase RecQ 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD low > 109
Pseudomonas lactucae CFBP13502 0.44 GEMAOFIL_04187 ATP-dependent DNA helicase RecQ 0.57 GEMAOFIL_04729 Tyrosine recombinase XerD low > 96
Pseudomonas fluorescens SBW25 0.44 PFLU_RS21920 DNA helicase RecQ 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD low > 109
Variovorax sp. OAS795 0.44 ABID97_RS03395 DNA helicase RecQ 0.47 ABID97_RS20265 site-specific tyrosine recombinase XerD low > 91
Pseudomonas stutzeri RCH2 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.54 Psest_3129 tyrosine recombinase XerD low > 67
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_02375 recQ DNA helicase RecQ 0.44 OKGIIK_11520 xerD site-specific tyrosine recombinase XerD low > 53
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS02465 ATP-dependent DNA helicase RecQ 0.48 HSERO_RS04265 tyrosine recombinase XerD 0.31 36
Rhizobium sp. OAE497 0.44 ABIE40_RS12745 DNA helicase RecQ 0.38 ABIE40_RS17685 site-specific tyrosine recombinase XerD low > 107
Agrobacterium fabrum C58 0.44 Atu0061 ATP-dependent DNA helicase 0.35 Atu3629 site-specific tyrosine recombinase XerD — —
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.48 Xcc-8004.4441.1 Tyrosine recombinase XerD low > 74
Methylophilus sp. DMC18 0.43 GFF2139 ATP-dependent DNA helicase RecQ 0.50 GFF2342 Tyrosine recombinase XerD low > 43
Magnetospirillum magneticum AMB-1 0.43 AMB_RS21505 DNA helicase RecQ 0.31 AMB_RS19880 site-specific tyrosine recombinase XerD low > 64
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS28295 DNA helicase RecQ 0.50 QEN71_RS02755 site-specific tyrosine recombinase XerD — —
Paraburkholderia graminis OAS925 0.43 ABIE53_003792 ATP-dependent DNA helicase RecQ 0.50 ABIE53_003361 integrase/recombinase XerD low > 113
Dinoroseobacter shibae DFL-12 0.43 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) 0.33 Dshi_1611 integrase family protein (RefSeq) 0.55 10
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS18145 ATP-dependent DNA helicase RecQ 0.51 BPHYT_RS15950 tyrosine recombinase XerD low > 109
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS02880 DNA helicase RecQ 0.46 ABZR87_RS00795 site-specific tyrosine recombinase XerD low > 80
Mucilaginibacter yixingensis YX-36 DSM 26809 0.42 ABZR88_RS20865 DNA helicase RecQ 0.32 ABZR88_RS10220 site-specific tyrosine recombinase XerD low > 71
Phaeobacter inhibens DSM 17395 0.42 PGA1_c31900 ATP-dependent DNA helicase RecQ 0.31 PGA1_c14060 tyrosine recombinase XerD low > 62
Echinicola vietnamensis KMM 6221, DSM 17526 0.42 Echvi_0784 ATP-dependent DNA helicase RecQ 0.31 Echvi_1809 tyrosine recombinase XerD 0.28 59
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS19310 ATP-dependent DNA helicase RecQ 0.48 RR42_RS03345 recombinase XerD low > 128
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_06595 ATP-dependent DNA helicase RecQ 0.50 H281DRAFT_04126 integrase/recombinase XerD — —
Ralstonia solanacearum GMI1000 0.42 RS_RS15155 DNA helicase RecQ 0.50 RS_RS12755 tyrosine recombinase XerD — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS07220 DNA helicase RecQ 0.50 RALBFv3_RS05140 site-specific tyrosine recombinase XerD low > 76
Ralstonia solanacearum PSI07 0.42 RPSI07_RS10025 DNA helicase RecQ 0.51 RPSI07_RS12160 site-specific tyrosine recombinase XerD low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF1958 ATP-dependent DNA helicase RecQ 0.46 GFF5461 Tyrosine recombinase XerD low > 90
Ralstonia solanacearum UW163 0.42 UW163_RS06400 DNA helicase RecQ 0.50 UW163_RS08485 site-specific tyrosine recombinase XerD — —
Dechlorosoma suillum PS 0.42 Dsui_3092 ATP-dependent DNA helicase RecQ 0.49 Dsui_1217 tyrosine recombinase XerD low > 51
Azospirillum brasilense Sp245 0.42 AZOBR_RS02840 ATP-dependent DNA helicase RecQ 0.34 AZOBR_RS03240 recombinase XerD 0.47 35
Lysobacter sp. OAE881 0.42 ABIE51_RS05145 DNA helicase RecQ 0.54 ABIE51_RS04495 site-specific tyrosine recombinase XerD low > 62
Sinorhizobium meliloti 1021 0.42 SMc01566 ATP-dependent DNA helicase 0.36 SMc00691 site-specific tyrosine recombinase XerD low > 103
Variovorax sp. SCN45 0.42 GFF6415 ATP-dependent DNA helicase RecQ 0.47 GFF2772 Site-specific tyrosine recombinase XerD low > 127
Acidovorax sp. GW101-3H11 0.41 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.48 Ac3H11_302 Tyrosine recombinase XerD — —
Rhodopseudomonas palustris CGA009 0.41 TX73_025080 DNA helicase RecQ 0.36 TX73_002625 site-specific tyrosine recombinase XerD low > 86
Phocaeicola vulgatus CL09T03C04 0.41 HMPREF1058_RS14585 DNA helicase RecQ 0.32 HMPREF1058_RS09680 site-specific tyrosine recombinase XerD low > 67
Bosea sp. OAE506 0.41 ABIE41_RS04160 DNA helicase RecQ 0.32 ABIE41_RS06100 site-specific tyrosine recombinase XerD low > 77
Azospirillum sp. SherDot2 0.41 MPMX19_00123 ATP-dependent DNA helicase RecQ 0.38 MPMX19_02643 Tyrosine recombinase XerD — —
Phocaeicola dorei CL03T12C01 0.41 ABI39_RS10235 DNA helicase RecQ 0.32 ABI39_RS07000 site-specific tyrosine recombinase XerD low > 72
Rhodospirillum rubrum S1H 0.40 Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) 0.33 Rru_A3738 Phage integrase (NCBI) — —
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS01195 DNA helicase RecQ 0.34 HMPREF1078_RS04705 site-specific tyrosine recombinase XerD low > 61
Castellaniella sp019104865 MT123 0.40 ABCV34_RS07985 DNA helicase RecQ 0.50 ABCV34_RS00515 site-specific tyrosine recombinase XerD 0.29 23
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS14110 DNA helicase RecQ 0.33 HMPREF1181_RS01250 site-specific tyrosine recombinase XerD low > 56
Cellulophaga baltica 18 0.39 M666_RS16920 DNA helicase RecQ 0.31 M666_RS11310 site-specific tyrosine recombinase XerD low > 67
Bacteroides thetaiotaomicron VPI-5482 0.39 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) 0.33 BT2843 integrase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.38 BACOVA_04594 ATP-dependent DNA helicase RecQ 0.33 BACOVA_02123 tyrosine recombinase XerD 0.50 14
Sphingobium sp. HT1-2 0.38 GFF798 ATP-dependent DNA helicase RecQ 0.30 GFF2416 Site-specific tyrosine recombinase XerD low > 95
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS14575 DNA helicase RecQ 0.30 A4249_RS04165 site-specific tyrosine recombinase XerD — —
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_2261 ATP-dependent DNA helicase RecQ 0.30 Ga0059261_3595 Site-specific recombinase XerD low > 68
Pedobacter sp. GW460-11-11-14-LB5 0.36 CA265_RS08905 DNA helicase RecQ 0.34 CA265_RS09520 site-specific tyrosine recombinase XerD low > 88
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_03578 ATP-dependent DNA helicase recQ 0.31 CCNA_03101 site-specific tyrosine recombinase XerD low > 67
Caulobacter crescentus NA1000 0.35 CCNA_03578 ATP-dependent DNA helicase recQ 0.31 CCNA_03101 site-specific tyrosine recombinase XerD 0.46 19
Bifidobacterium breve UCC2003 0.32 BBR_RS13150 DNA helicase RecQ 0.33 BBR_RS16755 site-specific tyrosine recombinase XerD low > 34

Not shown: 1 genomes with orthologs for CSW01_01045 only; 7 genomes with orthologs for CSW01_12250 only