Conservation of cofitness between CSW01_09245 and CSW01_11870 in Vibrio cholerae E7946 ATCC 55056

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09245 Holliday junction branch migration protein RuvA 1.0 CSW01_11870 DNA repair protein RadA 0.82 7
Escherichia coli Nissle 1917 0.67 ECOLIN_RS10365 Holliday junction branch migration protein RuvA 0.83 ECOLIN_RS25190 DNA repair protein RadA — —
Escherichia fergusonii Becca 0.67 EFB2_02081 Holliday junction ATP-dependent DNA helicase RuvA 0.83 EFB2_04057 DNA repair protein RadA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_01867 Holliday junction ATP-dependent DNA helicase RuvA 0.83 OHPLBJKB_03672 DNA repair protein RadA — —
Escherichia coli BW25113 0.67 b1861 ruvA Holliday junction DNA helicase motor protein (NCBI) 0.83 b4389 radA predicted repair protein (NCBI) low > 76
Escherichia coli BL21 0.67 ECD_01832 component of RuvABC resolvasome, regulatory subunit 0.83 ECD_04265 DNA repair protein — —
Escherichia coli ECRC62 0.67 BNILDI_15515 ruvA Holliday junction branch migration protein RuvA 0.82 BNILDI_08075 radA DNA repair protein RadA — —
Escherichia coli ECRC101 0.66 MCAODC_19125 ruvA Holliday junction branch migration protein RuvA 0.82 MCAODC_01710 radA DNA repair protein RadA — —
Escherichia coli ECRC98 0.66 JDDGAC_00855 ruvA Holliday junction branch migration protein RuvA 0.82 JDDGAC_14790 radA DNA repair protein RadA — —
Escherichia coli ECRC102 0.66 NIAGMN_01780 ruvA Holliday junction branch migration protein RuvA 0.82 NIAGMN_09045 radA DNA repair protein RadA — —
Escherichia coli ECRC101 0.66 OKFHMN_26280 ruvA Holliday junction branch migration protein RuvA 0.82 OKFHMN_11195 radA DNA repair protein RadA — —
Escherichia coli ECOR38 0.66 HEPCGN_04690 ruvA Holliday junction branch migration protein RuvA 0.83 HEPCGN_09195 radA DNA repair protein RadA — —
Enterobacter sp. TBS_079 0.66 MPMX20_02767 Holliday junction ATP-dependent DNA helicase RuvA 0.81 MPMX20_00694 DNA repair protein RadA low > 85
Rahnella sp. WP5 0.66 EX31_RS11675 Holliday junction branch migration protein RuvA 0.81 EX31_RS04030 DNA repair protein RadA low > 89
Escherichia coli ECRC99 0.66 KEDOAH_01825 ruvA Holliday junction branch migration protein RuvA 0.82 KEDOAH_16960 radA DNA repair protein RadA — —
Escherichia coli ECOR27 0.66 NOLOHH_16725 ruvA Holliday junction branch migration protein RuvA 0.82 NOLOHH_03520 radA DNA repair protein RadA — —
Enterobacter asburiae PDN3 0.66 EX28DRAFT_0695 Holliday junction DNA helicase subunit RuvA 0.81 EX28DRAFT_3597 DNA repair protein RadA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF1640 Holliday junction DNA helicase RuvA 0.82 GFF1057 DNA repair protein RadA — —
Klebsiella michiganensis M5al 0.65 BWI76_RS18150 Holliday junction branch migration protein RuvA 0.82 BWI76_RS04165 DNA repair protein RadA — —
Shewanella loihica PV-4 0.64 Shew_2076 Holliday junction DNA helicase RuvA (RefSeq) 0.40 Shew_2807 DNA repair protein RadA (RefSeq) — —
Alteromonas macleodii MIT1002 0.63 MIT1002_01332 Holliday junction ATP-dependent DNA helicase RuvA 0.74 MIT1002_02706 Lon protease 2 — —
Pantoea sp. MT58 0.63 IAI47_08445 Holliday junction branch migration protein RuvA 0.80 IAI47_16345 DNA repair protein RadA low > 76
Shewanella oneidensis MR-1 0.63 SO2430 ruvA Holliday junction DNA helicase RuvA (NCBI ptt file) 0.74 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.35 33
Shewanella sp. ANA-3 0.62 Shewana3_1956 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.74 Shewana3_1049 DNA repair protein RadA (RefSeq) low > 73
Dickeya dadantii 3937 0.61 DDA3937_RS10080 Holliday junction branch migration protein RuvA 0.76 DDA3937_RS02420 DNA repair protein RadA — —
Dickeya dianthicola ME23 0.61 DZA65_RS10525 Holliday junction branch migration protein RuvA 0.76 DZA65_RS02485 DNA repair protein RadA — —
Dickeya dianthicola 67-19 0.61 HGI48_RS10110 Holliday junction branch migration protein RuvA 0.76 HGI48_RS02380 DNA repair protein RadA — —
Pectobacterium carotovorum WPP14 0.61 HER17_RS11845 Holliday junction branch migration protein RuvA 0.77 HER17_RS19085 DNA repair protein RadA — —
Erwinia tracheiphila SCR3 0.60 LU632_RS13415 ruvA Holliday junction branch migration protein RuvA 0.80 LU632_RS02550 radA DNA repair protein RadA — —
Shewanella amazonensis SB2B 0.60 Sama_1840 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.73 Sama_0981 DNA repair protein RadA (RefSeq) — —
Serratia liquefaciens MT49 0.60 IAI46_14625 Holliday junction branch migration protein RuvA 0.79 IAI46_02945 DNA repair protein RadA — —
Pseudomonas putida KT2440 0.57 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA 0.62 PP_4644 DNA repair enzyme low > 96
Pseudomonas stutzeri RCH2 0.56 Psest_1496 Holliday junction DNA helicase, RuvA subunit 0.62 Psest_3401 DNA repair protein RadA low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.63 Psyr_4275 DNA replication and repair protein RadA low > 86
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.63 Psyr_4275 DNA replication and repair protein RadA — —
Pseudomonas sp. S08-1 0.55 OH686_19130 Holliday junction DNA helicase RuvA 0.62 OH686_16185 DNA repair protein RadA — —
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_18020 ATP-dependent DNA helicase RuvA 0.63 AO356_15680 DNA repair protein RadA low > 104
Pseudomonas sp. RS175 0.55 PFR28_03413 Holliday junction ATP-dependent DNA helicase RuvA 0.63 PFR28_03792 DNA repair protein RadA low > 88
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_638 Holliday junction DNA helicase RuvA 0.63 Pf1N1B4_2768 DNA repair protein RadA — —
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_03585 ATP-dependent DNA helicase RuvA 0.63 AO353_13980 DNA repair protein RadA low > 101
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_5536 Holliday junction DNA helicase RuvA 0.63 Pf6N2E2_5076 DNA repair protein RadA low > 103
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_1852 Holliday junction DNA helicase RuvA 0.63 PfGW456L13_1442 DNA repair protein RadA low > 87
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_1125 Holliday junction DNA helicase subunit RuvA 0.59 B158DRAFT_0877 DNA replication and repair protein RadA 0.55 40
Marinobacter adhaerens HP15 0.52 HP15_2041 Holliday junction ATP-dependent DNA helicase RuvA 0.68 HP15_487 DNA repair protein RadA — —
Pseudomonas fluorescens SBW25 0.52 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.63 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.63 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas simiae WCS417 0.52 PS417_22450 ATP-dependent DNA helicase RuvA 0.63 PS417_24305 DNA repair protein RadA low > 88
Rhodanobacter denitrificans MT42 0.48 LRK55_RS04690 Holliday junction branch migration protein RuvA 0.58 LRK55_RS02280 DNA repair protein RadA — —
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS04910 Holliday junction branch migration protein RuvA 0.58 LRK54_RS02525 DNA repair protein RadA — —
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS10840 Holliday junction branch migration protein RuvA 0.57 ABZR86_RS08845 DNA repair protein RadA 0.65 6
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_01840 ruvA Holliday junction branch migration protein RuvA 0.59 OKGIIK_09580 radA DNA repair protein RadA — —
Lysobacter sp. OAE881 0.44 ABIE51_RS05045 Holliday junction branch migration protein RuvA 0.57 ABIE51_RS07685 DNA repair protein RadA low > 62
Dechlorosoma suillum PS 0.43 Dsui_0485 Holliday junction DNA helicase, RuvA subunit 0.50 Dsui_2413 DNA repair protein RadA — —
Acinetobacter radioresistens SK82 0.42 MPMX26_02185 Holliday junction ATP-dependent DNA helicase RuvA 0.57 MPMX26_02235 DNA repair protein RadA low > 36
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1436.1 Holliday junction DNA helicase RuvA 0.59 Xcc-8004.3812.1 DNA repair protein RadA low > 74
Variovorax sp. SCN45 0.41 GFF2073 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) 0.51 GFF5087 DNA repair protein RadA low > 127
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS16615 holliday junction ATP-dependent DNA helicase RuvA 0.52 BPHYT_RS12235 DNA repair protein RadA — —
Castellaniella sp019104865 MT123 0.41 ABCV34_RS07980 Holliday junction branch migration protein RuvA 0.51 ABCV34_RS02345 DNA repair protein RadA low > 48
Variovorax sp. OAS795 0.39 ABID97_RS24920 Holliday junction branch migration protein RuvA 0.51 ABID97_RS03770 DNA repair protein RadA low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF1666 Holliday junction DNA helicase RuvA 0.48 GFF1833 DNA repair protein RadA low > 90
Paraburkholderia graminis OAS925 0.38 ABIE53_003494 Holliday junction DNA helicase RuvA 0.53 ABIE53_002526 DNA repair protein RadA/Sms low > 113
Ralstonia solanacearum GMI1000 0.38 RS_RS02490 Holliday junction branch migration protein RuvA 0.52 RS_RS06880 DNA repair protein RadA — —
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS11670 Holliday junction branch migration protein RuvA 0.52 RALBFv3_RS00210 DNA repair protein RadA — —
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS07625 Holliday junction branch migration protein RuvA 0.53 ABZR87_RS11670 DNA repair protein RadA low > 80
Ralstonia solanacearum UW163 0.38 UW163_RS01915 Holliday junction branch migration protein RuvA 0.52 UW163_RS13540 DNA repair protein RadA — —
Paraburkholderia bryophila 376MFSha3.1 0.38 H281DRAFT_04254 Holliday junction DNA helicase subunit RuvA 0.52 H281DRAFT_00590 DNA replication and repair protein RadA — —
Ralstonia solanacearum PSI07 0.37 RPSI07_RS21550 Holliday junction branch migration protein RuvA 0.52 RPSI07_RS17270 DNA repair protein RadA — —
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS26795 Holliday junction branch migration protein RuvA 0.54 QEN71_RS06320 DNA repair protein RadA — —
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS02705 Holliday junction DNA helicase RuvA 0.54 RR42_RS12030 DNA repair protein RadA — —
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS02090 Holliday junction DNA helicase RuvA 0.52 HSERO_RS10745 DNA repair protein RadA 0.36 41
Acidovorax sp. GW101-3H11 0.37 Ac3H11_4683 Holliday junction DNA helicase RuvA 0.51 Ac3H11_3371 DNA repair protein RadA — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_14545 Holliday junction branch migration protein RuvA 0.42 CA264_17125 DNA repair protein RadA — —
Synechococcus elongatus PCC 7942 0.30 Synpcc7942_2298 ruvA Holliday junction DNA helicase motor protein 0.41 Synpcc7942_1452 radA DNA repair protein RadA — —
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS18995 Holliday junction branch migration protein RuvA 0.38 CA265_RS22660 DNA repair protein RadA low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.30 Echvi_4082 Holliday junction DNA helicase, RuvA subunit 0.42 Echvi_1031 DNA repair protein RadA 0.31 22
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS18310 Holliday junction branch migration protein RuvA 0.40 ABZR88_RS20495 DNA repair protein RadA — —
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS13015 Holliday junction branch migration protein RuvA 0.41 HMPREF1078_RS08395 DNA repair protein RadA low > 61
Brevundimonas sp. GW460-12-10-14-LB2 0.25 A4249_RS15860 Holliday junction branch migration protein RuvA 0.38 A4249_RS03745 DNA repair protein RadA — —
Rhodopseudomonas palustris CGA009 0.25 TX73_005655 Holliday junction branch migration protein RuvA 0.41 TX73_015980 DNA repair protein RadA — —
Bifidobacterium breve UCC2003 0.24 BBR_RS15655 Holliday junction branch migration protein RuvA 0.36 BBR_RS18740 DNA repair protein RadA low > 34
Rhodospirillum rubrum S1H 0.24 Rru_A1088 DNA recombination protein RuvA (NCBI) 0.39 Rru_A0406 DNA repair protein RadA (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_0820 Holliday junction DNA helicase subunit RuvA 0.38 Ga0059261_0751 DNA repair protein RadA — —
Magnetospirillum magneticum AMB-1 0.23 AMB_RS16255 Holliday junction branch migration protein RuvA 0.41 AMB_RS10555 DNA repair protein RadA — —
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS07915 Holliday junction branch migration protein RuvA 0.40 HMPREF1181_RS00075 DNA repair protein RadA low > 56
Bosea sp. OAE506 0.23 ABIE41_RS09475 Holliday junction branch migration protein RuvA 0.43 ABIE41_RS17800 DNA repair protein RadA — —
Bacteroides thetaiotaomicron VPI-5482 0.23 BT1978 Holliday junction DNA helicase ruvA (NCBI ptt file) 0.40 BT2406 putative DNA repair protein (NCBI ptt file) — —
Mycobacterium tuberculosis H37Rv 0.23 Rv2593c Probable holliday junction DNA helicase RuvA 0.33 Rv3585 DNA repair protein RadA (DNA repair protein SMS) — —
Bacteroides ovatus ATCC 8483 0.23 BACOVA_00691 Holliday junction DNA helicase RuvA 0.40 BACOVA_03019 DNA repair protein RadA — —
Fusobacterium nucleatum SB010 0.23 HUW76_06655 Holliday junction branch migration protein RuvA 0.33 HUW76_02270 DNA repair protein RadA low > 35
Rhizobium sp. OAE497 0.22 ABIE40_RS15745 Holliday junction branch migration protein RuvA 0.41 ABIE40_RS06280 DNA repair protein RadA low > 107
Sinorhizobium meliloti 1021 0.22 SMc03966 Holliday junction DNA helicase RuvA 0.41 SMc00556 DNA repair protein RadA — —
Phaeobacter inhibens DSM 17395 0.22 PGA1_c05860 holliday junction ATP-dependent DNA helicase RuvA 0.41 PGA1_c10840 DNA repair protein RadA 0.31 31
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS08200 Holliday junction branch migration protein RuvA 0.40 ABI39_RS10420 DNA repair protein RadA — —
Agrobacterium fabrum C58 0.22 Atu3723 Holliday junction DNA helicase RuvA 0.40 Atu1077 DNA repair protein — —
Dinoroseobacter shibae DFL-12 0.21 Dshi_1104 Holliday junction DNA helicase RuvA (RefSeq) 0.41 Dshi_2129 DNA repair protein RadA (RefSeq) — —
Phocaeicola vulgatus CL09T03C04 0.21 HMPREF1058_RS00595 Holliday junction branch migration protein RuvA 0.41 HMPREF1058_RS14715 DNA repair protein RadA low > 67
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_3204 Holliday junction DNA helicase RuvA (RefSeq) 0.36 DvMF_0471 DNA repair protein RadA (RefSeq) low > 51
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_03345 Holliday junction DNA helicase RuvA 0.40 CCNA_01732 DNA repair protein RadA — —
Caulobacter crescentus NA1000 0.21 CCNA_03345 Holliday junction DNA helicase RuvA 0.40 CCNA_01732 DNA repair protein RadA low > 66
Azospirillum brasilense Sp245 0.20 AZOBR_RS09045 Holliday junction DNA helicase RuvA 0.42 AZOBR_RS08320 DNA repair protein RadA — —
Azospirillum sp. SherDot2 0.19 MPMX19_00697 Holliday junction ATP-dependent DNA helicase RuvA 0.41 MPMX19_00904 DNA repair protein RadA — —

Not shown: 0 genomes with orthologs for CSW01_09245 only; 1 genomes with orthologs for CSW01_11870 only