| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_00560 | | DNA polymerase I | 1.0 | CSW01_11555 | | riboflavin synthase | 0.91 | 3 |
| Serratia liquefaciens MT49 | 0.66 | IAI46_24985 | | DNA polymerase I | 0.28 | IAI46_11215 | | riboflavin synthase | — | — |
| Rahnella sp. WP5 | 0.65 | EX31_RS15905 | | DNA polymerase I | 0.27 | EX31_RS13850 | | riboflavin synthase | — | — |
| Pectobacterium carotovorum WPP14 | 0.65 | HER17_RS21470 | | DNA polymerase I | 0.26 | HER17_RS09225 | | riboflavin synthase | — | — |
| Pantoea sp. MT58 | 0.65 | IAI47_00430 | | DNA polymerase I | 0.27 | IAI47_10815 | | riboflavin synthase | — | — |
| Pantoea agglomerans CFBP13505 P0401 | 0.64 | PagCFBP13505_RS18920 | | DNA polymerase I | 0.26 | PagCFBP13505_RS17775 | | riboflavin synthase subunit alpha | — | — |
| Erwinia amylovora T8 | 0.64 | OLJFJH_05470 | | DNA polymerase I | 0.28 | OLJFJH_14530 | | riboflavin synthase subunit alpha | — | — |
| Enterobacter asburiae PDN3 | 0.64 | EX28DRAFT_4343 | | DNA polymerase I (EC 2.7.7.7) | 0.27 | EX28DRAFT_1659 | | riboflavin synthase alpha chain (EC 2.5.1.9) | — | — |
| Escherichia coli ECOR38 | 0.64 | HEPCGN_12785 | polA | DNA polymerase I | 0.26 | HEPCGN_05750 | ribE | riboflavin synthase | — | — |
| Escherichia coli BW25113 | 0.64 | b3863 | polA | DNA polymerase I (NCBI) | 0.26 | b1662 | ribC | riboflavin synthase subunit alpha (NCBI) | — | — |
| Escherichia fergusonii Becca | 0.64 | EFB2_04753 | | DNA polymerase I | 0.26 | EFB2_02330 | | Riboflavin synthase | — | — |
| Escherichia coli Nissle 1917 | 0.64 | ECOLIN_RS22270 | | DNA polymerase I | 0.26 | ECOLIN_RS09265 | | riboflavin synthase | — | — |
| Escherichia coli ECRC102 | 0.64 | NIAGMN_11905 | polA | DNA polymerase I | 0.26 | NIAGMN_00700 | ribE | riboflavin synthase | — | — |
| Escherichia coli BL21 | 0.64 | ECD_03749 | | 5 | 0.26 | ECD_01633 | | riboflavin synthase, alpha subunit | — | — |
| Escherichia coli ECRC99 | 0.64 | KEDOAH_14000 | polA | DNA polymerase I | 0.26 | KEDOAH_00745 | ribE | riboflavin synthase | — | — |
| Escherichia coli ECRC101 | 0.64 | MCAODC_04650 | polA | DNA polymerase I | 0.26 | MCAODC_18045 | ribE | riboflavin synthase | — | — |
| Escherichia coli ECOR27 | 0.64 | NOLOHH_06280 | polA | DNA polymerase I | 0.26 | NOLOHH_17885 | ribE | riboflavin synthase | — | — |
| Escherichia coli ECRC98 | 0.64 | JDDGAC_17775 | polA | DNA polymerase I | 0.26 | JDDGAC_01955 | ribE | riboflavin synthase | — | — |
| Escherichia coli ECRC100 | 0.64 | OKFHMN_14150 | polA | DNA polymerase I | 0.26 | OKFHMN_27365 | ribE | riboflavin synthase | — | — |
| Escherichia coli ECRC62 | 0.64 | BNILDI_05250 | polA | DNA polymerase I | 0.26 | BNILDI_16675 | ribE | riboflavin synthase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.64 | OHPLBJKB_04189 | | DNA polymerase I | 0.26 | OHPLBJKB_02062 | | Riboflavin synthase | — | — |
| Erwinia tracheiphila SCR3 | 0.64 | LU632_RS23870 | polA | DNA polymerase I | 0.27 | LU632_RS11175 | | riboflavin synthase subunit alpha | — | — |
| Erwinia tracheiphila HP pepo 2.2 | 0.64 | IJEDHG_10990 | polA | DNA polymerase I | 0.27 | IJEDHG_25185 | ribE | riboflavin synthase subunit alpha | — | — |
| Enterobacter sp. TBS_079 | 0.64 | MPMX20_04601 | | DNA polymerase I | 0.26 | MPMX20_01974 | | Riboflavin synthase | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.63 | GFF2216 | | DNA polymerase I (EC 2.7.7.7) | 0.26 | GFF3614 | | Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) | — | — |
| Klebsiella michiganensis M5al | 0.63 | BWI76_RS00355 | | DNA polymerase I | 0.25 | BWI76_RS16530 | | riboflavin synthase subunit alpha | — | — |
| Klebsiella pneumoniae MKP103 | 0.63 | KDGMDA_08970 | | DNA polymerase I | 0.26 | KDGMDA_23490 | | riboflavin synthase subunit alpha | — | — |
| Dickeya dadantii 3937 | 0.63 | DDA3937_RS00105 | | DNA polymerase I | 0.26 | DDA3937_RS12630 | | riboflavin synthase | — | — |
| Shewanella loihica PV-4 | 0.63 | Shew_3714 | | DNA polymerase I (RefSeq) | 0.55 | Shew_1188 | | riboflavin synthase subunit alpha (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.63 | Sama_0093 | | DNA-directed DNA polymerase (RefSeq) | 0.56 | Sama_1017 | | riboflavin synthase subunit alpha (RefSeq) | low | > 62 |
| Dickeya dianthicola 67-19 | 0.63 | HGI48_RS21260 | | DNA polymerase I | 0.26 | HGI48_RS12695 | | riboflavin synthase subunit alpha | — | — |
| Shewanella sp. ANA-3 | 0.62 | Shewana3_4109 | | DNA polymerase I (RefSeq) | 0.55 | Shewana3_1097 | | riboflavin synthase subunit alpha (RefSeq) | — | — |
| Dickeya dianthicola ME23 | 0.62 | DZA65_RS22235 | | DNA polymerase I | 0.26 | DZA65_RS13150 | | riboflavin synthase | — | — |
| Shewanella oneidensis MR-1 | 0.62 | SO4669 | polA | DNA polymerase I (NCBI ptt file) | 0.55 | SO3468 | ribE-2 | riboflavin synthase, alpha subunit (NCBI ptt file) | — | — |
| Alteromonas macleodii MIT1002 | 0.62 | MIT1002_00014 | | DNA polymerase I | 0.56 | MIT1002_02699 | | Riboflavin synthase | — | — |
| Kangiella aquimarina DSM 16071 | 0.59 | B158DRAFT_0499 | | DNA polymerase I (EC 2.7.7.7) | 0.53 | B158DRAFT_1911 | | riboflavin synthase alpha chain (EC 2.5.1.9) | — | — |
| Pseudomonas stutzeri RCH2 | 0.58 | Psest_4219 | | DNA polymerase I | 0.58 | Psest_3551 | | riboflavin synthase, alpha subunit | — | — |
| Pseudomonas aeruginosa PA14 | 0.58 | IKLFDK_25945 | | DNA polymerase I | 0.59 | IKLFDK_20905 | | riboflavin synthase | — | — |
| Pseudomonas sp. BP01 | 0.58 | JOY50_RS21110 | polA | DNA polymerase I | 0.60 | JOY50_RS20120 | | riboflavin synthase | low | > 84 |
| Pseudomonas aeruginosa PUPa3 | 0.58 | DQ20_RS58195 | polA;go_function=nucleic | DNA polymerase I | 0.59 | DQ20_RS47905 | | riboflavin synthase | — | — |
| Pseudomonas putida KT2440 | 0.58 | PP_0123 | | DNA polymerase I, 5 | 0.60 | PP_0515 | | Riboflavin synthase | low | > 96 |
| Pseudomonas aeruginosa MRSN321 | 0.58 | DY961_RS25765 | polA;go_function=nucleic | DNA polymerase I | 0.59 | DY961_RS27740 | | riboflavin synthase | — | — |
| Pseudomonas sp. SVBP6 | 0.57 | COO64_RS02475 | polA | DNA polymerase I | 0.58 | COO64_RS15885 | | riboflavin synthase | — | — |
| Pseudomonas sp. S08-1 | 0.57 | OH686_12215 | | DNA polymerase I | 0.59 | OH686_15700 | | riboflavin synthase, alpha subunit | — | — |
| Pseudomonas segetis P6 | 0.57 | MPMX49_00321 | | DNA polymerase I | 0.58 | MPMX49_00991 | | Riboflavin synthase | low | > 75 |
| Pseudomonas simiae WCS417 | 0.56 | PS417_00405 | | DNA polymerase I | 0.58 | PS417_25260 | | riboflavin synthase subunit alpha | — | — |
| Pseudomonas orientalis W4I3 | 0.56 | QF045_RS03350 | | DNA polymerase I | 0.59 | QF045_RS27225 | | riboflavin synthase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.56 | AO353_10930 | | DNA polymerase I | 0.57 | AO353_06710 | | riboflavin synthase subunit alpha | low | > 101 |
| Pseudomonas sp. DMC3 | 0.55 | GFF631 | | DNA polymerase I | 0.57 | GFF3828 | | Riboflavin synthase | — | — |
| Pseudomonas lactucae CFBP13502 | 0.55 | GEMAOFIL_00284 | | DNA polymerase I | 0.58 | GEMAOFIL_05157 | | Riboflavin synthase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.55 | PFLU_RS00395 | | DNA polymerase I | 0.58 | PFLU_RS26895 | | riboflavin synthase | — | — |
| Pseudomonas fluorescens SBW25 | 0.55 | PFLU_RS00395 | | DNA polymerase I | 0.58 | PFLU_RS26895 | | riboflavin synthase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.55 | Psyr_0270 | | DNA polymerase I | 0.58 | Psyr_4461 | | Lumazine-binding protein | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.55 | Psyr_0270 | | DNA polymerase I | 0.58 | Psyr_4461 | | Lumazine-binding protein | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.55 | Pf1N1B4_1875 | | DNA polymerase I (EC 2.7.7.7) | 0.57 | Pf1N1B4_2650 | | Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.55 | AO356_11465 | | DNA polymerase I | 0.57 | AO356_14935 | | riboflavin synthase subunit alpha | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.54 | PfGW456L13_594 | | DNA polymerase I (EC 2.7.7.7) | 0.57 | PfGW456L13_1314 | | Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.54 | Pf6N2E2_4162 | | DNA polymerase I (EC 2.7.7.7) | 0.57 | Pf6N2E2_4920 | | Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) | — | — |
| Pseudomonas sp. RS175 | 0.54 | PFR28_04624 | | DNA polymerase I | 0.56 | PFR28_03948 | | Riboflavin synthase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.53 | HSERO_RS02260 | | DNA polymerase I | 0.40 | HSERO_RS18240 | | riboflavin synthase subunit alpha | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.52 | QEN71_RS17885 | | DNA polymerase I | 0.40 | QEN71_RS03295 | | riboflavin synthase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.52 | ABZR87_RS15680 | | DNA polymerase I | 0.40 | ABZR87_RS08880 | | riboflavin synthase | — | — |
| Rhodanobacter sp000427505 FW510-R12 | 0.52 | LRK53_RS01570 | | DNA polymerase I | 0.48 | LRK53_RS05405 | | riboflavin synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.52 | RALBFv3_RS03750 | | DNA polymerase I | 0.39 | RALBFv3_RS12820 | | riboflavin synthase | — | — |
| Ralstonia solanacearum UW163 | 0.52 | UW163_RS09920 | | DNA polymerase I | 0.39 | UW163_RS00745 | | riboflavin synthase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.52 | ABZR86_RS17015 | | DNA polymerase I | 0.47 | ABZR86_RS10680 | | riboflavin synthase | — | — |
| Dechlorosoma suillum PS | 0.52 | Dsui_0459 | | DNA polymerase I | 0.40 | Dsui_0716 | | riboflavin synthase, alpha subunit | — | — |
| Marinobacter adhaerens HP15 | 0.52 | HP15_293 | | DNA polymerase I | 0.27 | HP15_2264 | | riboflavin synthase subunit alpha | — | — |
| Rhodanobacter denitrificans MT42 | 0.52 | LRK55_RS06585 | | DNA polymerase I | 0.48 | LRK55_RS04370 | | riboflavin synthase | — | — |
| Methylophilus sp. DMC18 | 0.52 | GFF1658 | | DNA polymerase I | 0.42 | GFF873 | | Riboflavin synthase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.52 | OKGIIK_16785 | polA | DNA polymerase I | 0.48 | OKGIIK_11425 | ribE | riboflavin synthase | — | — |
| Ralstonia solanacearum GMI1000 | 0.52 | RS_RS11195 | | DNA polymerase I | 0.38 | RS_RS03595 | | riboflavin synthase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.52 | LRK54_RS06840 | | DNA polymerase I | 0.48 | LRK54_RS04595 | | riboflavin synthase | — | — |
| Ralstonia solanacearum PSI07 | 0.52 | RPSI07_RS13480 | | DNA polymerase I | 0.39 | RPSI07_RS20400 | | riboflavin synthase | — | — |
| Burkholderia phytofirmans PsJN | 0.51 | BPHYT_RS33610 | | DNA polymerase I | 0.40 | BPHYT_RS15385 | | riboflavin synthase subunit alpha | — | — |
| Paraburkholderia graminis OAS925 | 0.51 | ABIE53_004852 | | DNA polymerase-1 | 0.40 | ABIE53_003243 | | riboflavin synthase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.51 | RR42_RS15050 | | DNA polymerase I | 0.40 | RR42_RS15560 | | riboflavin synthase subunit alpha | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.51 | H281DRAFT_06022 | | DNA polymerase I | 0.39 | H281DRAFT_04020 | | riboflavin synthase alpha chain | — | — |
| Lysobacter sp. OAE881 | 0.49 | ABIE51_RS02010 | | DNA polymerase I | 0.48 | ABIE51_RS04640 | | riboflavin synthase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.49 | Xcc-8004.5105.1 | | DNA polymerase I (EC 2.7.7.7) | 0.45 | Xcc-8004.4390.1 | | Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) | — | — |
| Variovorax sp. SCN45 | 0.48 | GFF4006 | | DNA polymerase I (EC 2.7.7.7) | 0.37 | GFF569 | | Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) | low | > 127 |
| Variovorax sp. OAS795 | 0.47 | ABID97_RS09180 | | DNA polymerase I | 0.39 | ABID97_RS17940 | | riboflavin synthase | — | — |
| Castellaniella sp019104865 MT123 | 0.47 | ABCV34_RS02195 | | DNA polymerase I | 0.36 | ABCV34_RS10540 | | riboflavin synthase | — | — |
| Acinetobacter radioresistens SK82 | 0.46 | MPMX26_00574 | | DNA polymerase I | 0.56 | MPMX26_00154 | | Riboflavin synthase | — | — |
| Acinetobacter baumannii LAC-4 | 0.46 | RR41_RS15915 | | DNA polymerase I | 0.56 | RR41_RS17845 | | riboflavin synthase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.45 | GFF5584 | | DNA polymerase I (EC 2.7.7.7) | 0.38 | GFF5167 | | Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) | — | — |
| Caulobacter crescentus NA1000 | 0.39 | CCNA_03577 | | DNA polymerase I | 0.33 | CCNA_00930 | | riboflavin synthase alpha chain | 0.47 | 32 |
| Caulobacter crescentus NA1000 Δfur | 0.39 | CCNA_03577 | | DNA polymerase I | 0.33 | CCNA_00930 | | riboflavin synthase alpha chain | low | > 67 |
| Dinoroseobacter shibae DFL-12 | 0.39 | Dshi_2909 | | DNA polymerase I (RefSeq) | 0.33 | Dshi_2252 | | riboflavin synthase, alpha subunit (RefSeq) | — | — |
| Azospirillum sp. SherDot2 | 0.39 | MPMX19_04869 | | DNA polymerase I | 0.37 | MPMX19_00735 | | Riboflavin synthase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.39 | PGA1_c31780 | | DNA polymerase I | 0.33 | PGA1_c08910 | | riboflavin synthase alpha chain | — | — |
| Azospirillum brasilense Sp245 | 0.38 | AZOBR_RS30685 | | DNA polymerase | 0.36 | AZOBR_RS10030 | | riboflavin synthase subunit alpha | — | — |
| Agrobacterium fabrum C58 | 0.38 | Atu0110 | | DNA polymerase I | 0.31 | Atu1169 | | riboflavin synthase alpha chain | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.38 | A4249_RS13840 | | DNA polymerase I | 0.34 | A4249_RS06025 | | riboflavin synthase | — | — |
| Rhizobium sp. OAE497 | 0.38 | ABIE40_RS00490 | | DNA polymerase I | 0.30 | ABIE40_RS06730 | | riboflavin synthase | 0.72 | 2 |
| Parabacteroides merdae CL09T00C40 | 0.37 | HMPREF1078_RS06335 | | DNA polymerase I | 0.28 | HMPREF1078_RS16395 | | riboflavin synthase | — | — |
| Xanthobacter sp. DMC5 | 0.37 | GFF1973 | | DNA polymerase I | 0.31 | GFF578 | | Riboflavin synthase | — | — |
| Bacteroides stercoris CC31F | 0.36 | HMPREF1181_RS02070 | | DNA polymerase I | 0.28 | HMPREF1181_RS10815 | | riboflavin synthase | — | — |
| Bacteroides ovatus ATCC 8483 | 0.36 | BACOVA_01357 | | DNA-directed DNA polymerase | 0.28 | BACOVA_00606 | | riboflavin synthase, alpha subunit | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.36 | BT3260 | | DNA polymerase I (NCBI ptt file) | 0.28 | BT1317 | | riboflavin synthase alpha chain (NCBI ptt file) | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.36 | Echvi_1032 | | DNA polymerase I | 0.30 | Echvi_3720 | | riboflavin synthase, alpha subunit | — | — |
| Phocaeicola dorei CL03T12C01 | 0.36 | ABI39_RS05440 | | DNA polymerase I | 0.29 | ABI39_RS13890 | | riboflavin synthase | — | — |
| Cellulophaga baltica 18 | 0.35 | M666_RS07555 | | DNA polymerase I | 0.31 | M666_RS04470 | | riboflavin synthase | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.35 | HMPREF1058_RS11500 | | DNA polymerase I | 0.29 | HMPREF1058_RS17690 | | riboflavin synthase | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.35 | CA264_16535 | | DNA polymerase I | 0.28 | CA264_06100 | | riboflavin synthase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.35 | Ga0059261_2244 | | DNA polymerase I (EC 2.7.7.7) | 0.35 | Ga0059261_2335 | | riboflavin synthase alpha chain (EC 2.5.1.9) | — | — |
| Sphingobium sp. HT1-2 | 0.35 | GFF3778 | | DNA polymerase I (EC 2.7.7.7) | 0.32 | GFF3256 | | Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.34 | CA265_RS19630 | | DNA polymerase I | 0.30 | CA265_RS02220 | | riboflavin synthase | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.34 | ABZR88_RS20185 | | DNA polymerase I | 0.28 | ABZR88_RS09895 | | riboflavin synthase | — | — |
| Rhodospirillum rubrum S1H | 0.34 | Rru_A3514 | | DNA polymerase A (NCBI) | 0.34 | Rru_A1824 | | Lumazine-binding protein (NCBI) | — | — |
| Bosea sp. OAE506 | 0.34 | ABIE41_RS03570 | | DNA polymerase I | 0.28 | ABIE41_RS19755 | | riboflavin synthase | — | — |
| Synechococcus elongatus PCC 7942 | 0.29 | Synpcc7942_0194 | polA | DNA polymerase I | 0.37 | Synpcc7942_1624 | ribC | riboflavin synthase subunit alpha | — | — |
| Sinorhizobium meliloti 1021 | 0.29 | SMc02850 | | DNA polymerase I | 0.29 | SMc01773 | | riboflavin synthase subunit alpha | — | — |
| Synechocystis sp000284455 PCC 6803 | 0.28 | SGL_RS16290 | | DNA polymerase I | 0.33 | SGL_RS12575 | | riboflavin synthase | — | — |
| Fusobacterium nucleatum SB010 | 0.26 | HUW76_04385 | | DNA polymerase I | 0.36 | HUW76_09290 | | riboflavin synthase | low | > 35 |
| Mycobacterium tuberculosis H37Rv | 0.18 | Rv1629 | | Probable DNA polymerase I PolA | 0.38 | Rv1412 | | Probable riboflavin synthase alpha chain RibC (RibE) | — | — |
Not shown: 3 genomes with orthologs for CSW01_00560 only; 3 genomes with orthologs for CSW01_11555 only