Conservation of cofitness between CSW01_02495 and CSW01_05145 in Vibrio cholerae E7946 ATCC 55056

112 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.0 CSW01_05145 endonuclease III 0.39 17
Rahnella sp. WP5 0.73 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.83 EX31_RS06590 endonuclease III low > 89
Klebsiella michiganensis M5al 0.72 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.83 BWI76_RS16385 endonuclease III
Escherichia coli BL21 0.72 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent 0.84 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
Escherichia coli ECOR38 0.72 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E 0.84 HEPCGN_05910 nth endonuclease III low > 88
Escherichia fergusonii Becca 0.72 EFB2_00956 Ribosomal RNA small subunit methyltransferase E 0.83 EFB2_02359 Endonuclease III low > 86
Escherichia coli ECRC62 0.72 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.84 BNILDI_16835 nth endonuclease III low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E 0.84 OHPLBJKB_02093 Endonuclease III low > 74
Escherichia coli ECRC98 0.72 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.83 JDDGAC_02115 nth endonuclease III low > 87
Escherichia coli ECRC99 0.72 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.83 KEDOAH_00580 nth endonuclease III
Escherichia coli ECRC101 0.72 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.83 MCAODC_17885 nth endonuclease III low > 87
Escherichia coli ECRC100 0.72 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.83 OKFHMN_27525 nth endonuclease III low > 79
Escherichia coli BW25113 0.72 b2946 yggJ orf, hypothetical protein (VIMSS) 0.84 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) low > 76
Escherichia coli ECOR27 0.72 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.84 NOLOHH_18045 nth endonuclease III
Escherichia coli Nissle 1917 0.72 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.84 ECOLIN_RS09110 endonuclease III
Escherichia coli ECRC102 0.72 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.83 NIAGMN_00540 nth endonuclease III low > 80
Klebsiella pneumoniae MKP103 0.71 KDGMDA_04585 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.84 KDGMDA_23325 endonuclease III low > 95
Pantoea sp. MT58 0.70 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.84 IAI47_10475 endonuclease III low > 76
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2984 RNA methyltransferase, RsmE family 0.84 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) low > 76
Pantoea agglomerans CFBP13505 P0401 0.70 PagCFBP13505_RS16075 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.84 PagCFBP13505_RS05655 endonuclease III low > 74
Serratia liquefaciens MT49 0.70 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.83 IAI46_11455 endonuclease III low > 87
Enterobacter sp. TBS_079 0.70 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E 0.85 MPMX20_02005 Endonuclease III low > 85
Erwinia amylovora T8 0.69 OLJFJH_08575 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.82 OLJFJH_14390 endonuclease III low > 58
Erwinia tracheiphila SCR3 0.69 LU632_RS05485 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.82 LU632_RS11305 nth endonuclease III low > 73
Erwinia tracheiphila HP pepo 2.2 0.69 IJEDHG_03425 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.82 IJEDHG_25070 nth endonuclease III low > 61
Dickeya dadantii 3937 0.69 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.82 DDA3937_RS10545 endonuclease III low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.84 GFF3641 Endonuclease III (EC 4.2.99.18) low > 78
Dickeya dianthicola ME23 0.67 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.83 DZA65_RS11025 endonuclease III low > 75
Dickeya dianthicola 67-19 0.67 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.82 HGI48_RS10545 endonuclease III low > 71
Pectobacterium carotovorum WPP14 0.67 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.83 HER17_RS10860 endonuclease III low > 75
Shewanella sp. ANA-3 0.66 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.79 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) low > 73
Shewanella oneidensis MR-1 0.65 SO0832 conserved hypothetical protein TIGR00046 (NCBI ptt file) 0.80 SO2514 nth endonuclease III (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.64 Sama_0575 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.85 Sama_1836 endonuclease III (RefSeq) low > 62
Shewanella loihica PV-4 0.63 Shew_3224 hypothetical protein (RefSeq) 0.82 Shew_2072 endonuclease III (RefSeq) low > 60
Marinobacter adhaerens HP15 0.48 HP15_2926 ribosomal RNA small subunit methyltransferase E 0.77 HP15_1285 endonuclease III low > 73
Alteromonas macleodii MIT1002 0.48 MIT1002_03054 Ribosomal RNA small subunit methyltransferase E 0.32 MIT1002_01251 Endonuclease III low > 70
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_0180 RNA methyltransferase, RsmE family 0.72 B158DRAFT_2365 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) low > 40
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_08050 16S rRNA methyltransferase 0.72 AO353_04085 endonuclease III low > 101
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_13565 16S rRNA methyltransferase 0.72 AO356_18345 endonuclease III 0.23 79
Pseudomonas simiae WCS417 0.43 PS417_26545 16S rRNA methyltransferase 0.72 PS417_05655 endonuclease III low > 88
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.73 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) low > 103
Pseudomonas sp. RS175 0.43 PFR28_04209 Ribosomal RNA small subunit methyltransferase E 0.71 PFR28_03349 Endonuclease III low > 88
Pseudomonas fluorescens SBW25 0.43 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.72 PFLU_RS05740 endonuclease III low > 109
Pseudomonas aeruginosa PA14 0.43 IKLFDK_23325 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.71 IKLFDK_17935 endonuclease III low > 98
Pseudomonas aeruginosa MRSN321 0.43 DY961_RS22075 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.71 DY961_RS15450 nth;go_function=DNA-(apurinic endonuclease III low > 100
Pseudomonas lactucae CFBP13502 0.43 GEMAOFIL_05440 Ribosomal RNA small subunit methyltransferase E 0.72 GEMAOFIL_01318 Endonuclease III low > 96
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.72 PFLU_RS05740 endonuclease III low > 109
Pseudomonas orientalis W4I3 0.43 QF045_RS00940 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.71 QF045_RS08580 endonuclease III low > 93
Pseudomonas aeruginosa PUPa3 0.43 DQ20_RS37225 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.71 DQ20_RS41610 nth;go_function=DNA-(apurinic endonuclease III low > 101
Pseudomonas sp. SVBP6 0.43 COO64_RS13645 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.71 COO64_RS16885 nth endonuclease III low > 93
Pseudomonas sp. DMC3 0.43 GFF180 Ribosomal RNA small subunit methyltransferase E 0.72 GFF5088 Endonuclease III low > 89
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.72 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) low > 87
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.71 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase low > 86
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.72 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18)
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.71 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase low > 86
Pseudomonas sp. BP01 0.42 JOY50_RS09765 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.70 JOY50_RS23995 nth endonuclease III low > 84
Pseudomonas segetis P6 0.42 MPMX49_00634 Ribosomal RNA small subunit methyltransferase E 0.70 MPMX49_01452 Endonuclease III low > 75
Pseudomonas putida KT2440 0.42 PP_4985 16S rRNA m3U1498 methyltransferase 0.70 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites low > 96
Pseudomonas sp. S08-1 0.41 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.72 OH686_03910 endonuclease III low > 80
Methylophilus sp. DMC18 0.41 GFF2490 Ribosomal RNA small subunit methyltransferase E 0.65 GFF1728 Endonuclease III low > 43
Pseudomonas stutzeri RCH2 0.41 Psest_0305 RNA methyltransferase, RsmE family 0.70 Psest_3118 endonuclease III low > 67
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.1558.1 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.68 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18)
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS10230 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.70 ABZR86_RS08185 endonuclease III low > 74
Acinetobacter radioresistens SK82 0.37 MPMX26_01001 Ribosomal RNA small subunit methyltransferase E 0.70 MPMX26_02306 Endonuclease III low > 36
Lysobacter sp. OAE881 0.36 ABIE51_RS05260 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.64 ABIE51_RS07560 endonuclease III low > 62
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS04160 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.68 LRK54_RS01850 endonuclease III low > 59
Rhodanobacter denitrificans MT42 0.35 LRK55_RS03930 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.68 LRK55_RS01640 endonuclease III
Dechlorosoma suillum PS 0.35 Dsui_1568 RNA methyltransferase, RsmE family 0.70 Dsui_2985 endonuclease III
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS16855 16S rRNA methyltransferase 0.67 BPHYT_RS06080 endonuclease IV low > 109
Rhodanobacter sp000427505 FW510-R12 0.34 LRK53_RS05765 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.68 LRK53_RS08200 endonuclease III low > 59
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_11035 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.66 OKGIIK_04675 nth endonuclease III low > 53
Ralstonia solanacearum UW163 0.34 UW163_RS07745 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.68 UW163_RS11660 endonuclease III
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_06311 16S rRNA (uracil1498-N3)-methyltransferase 0.67 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III low > 103
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS05880 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.68 RALBFv3_RS14195 endonuclease III low > 76
Ralstonia solanacearum PSI07 0.34 RPSI07_RS11365 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.69 RPSI07_RS19265 endonuclease III low > 81
Paraburkholderia graminis OAS925 0.34 ABIE53_003540 16S rRNA (uracil1498-N3)-methyltransferase 0.67 ABIE53_001423 endonuclease-3 low > 113
Acinetobacter baumannii LAC-4 0.34 RR41_RS05720 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.72 RR41_RS09045 endonuclease III low > 55
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS01505 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.68 ABZR87_RS09915 endonuclease III low > 80
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS27020 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.66 QEN71_RS24560 endonuclease III low > 153
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS17590 16S rRNA methyltransferase 0.67 RR42_RS05970 endonuclease III low > 128
Ralstonia solanacearum GMI1000 0.32 RS_RS13825 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.68 RS_RS04975 endonuclease III low > 80
Acidovorax sp. GW101-3H11 0.32 Ac3H11_4323 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.62 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) low > 79
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS07110 16S rRNA methyltransferase 0.73 HSERO_RS08070 endonuclease IV low > 78
Variovorax sp. SCN45 0.28 GFF3255 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) 0.63 GFF418 Endonuclease III (EC 4.2.99.18) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF2462 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.63 GFF4003 Endonuclease III (EC 4.2.99.18) low > 90
Castellaniella sp019104865 MT123 0.26 ABCV34_RS15445 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.61 ABCV34_RS08465 endonuclease III low > 48
Parabacteroides merdae CL09T00C40 0.23 HMPREF1078_RS10135 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.39 HMPREF1078_RS09755 endonuclease III low > 61
Fusobacterium nucleatum SB010 0.20 HUW76_04180 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.40 HUW76_00260 endonuclease III low > 35
Azospirillum sp. SherDot2 0.19 MPMX19_00577 Ribosomal RNA small subunit methyltransferase E 0.60 MPMX19_02500 Endonuclease III low > 112
Pontibacter actiniarum KMM 6156, DSM 19842 0.19 CA264_05265 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.41 CA264_14955 endonuclease III low > 74
Bacteroides stercoris CC31F 0.19 HMPREF1181_RS05940 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.38 HMPREF1181_RS05445 endonuclease III low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS23620 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.38 CA265_RS00605 endonuclease III low > 88
Dinoroseobacter shibae DFL-12 0.18 Dshi_3099 protein of unknown function DUF558 (RefSeq) 0.54 Dshi_3023 endonuclease III (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.18 PGA1_c02950 RNA methyltransferase-like protein 0.55 PGA1_c29040 endonuclease III low > 62
Caulobacter crescentus NA1000 0.18 CCNA_03528 RNA methyltransferase 0.53 CCNA_03847 endonuclease III low > 66
Caulobacter crescentus NA1000 Δfur 0.18 CCNA_03528 RNA methyltransferase 0.53 CCNA_03847 endonuclease III low > 67
Azospirillum brasilense Sp245 0.18 AZOBR_RS11890 16S rRNA methyltransferase 0.62 AZOBR_RS01565 endonuclease III low > 97
Sphingomonas koreensis DSMZ 15582 0.18 Ga0059261_0807 RNA methyltransferase, RsmE family 0.55 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) low > 68
Phocaeicola dorei CL03T12C01 0.18 ABI39_RS18150 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.38 ABI39_RS11275 endonuclease III low > 72
Mucilaginibacter yixingensis YX-36 DSM 26809 0.18 ABZR88_RS17085 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.40 ABZR88_RS16725 endonuclease III low > 71
Phocaeicola vulgatus CL09T03C04 0.18 HMPREF1058_RS05940 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.39 HMPREF1058_RS15245 endonuclease III low > 67
Bacteroides ovatus ATCC 8483 0.17 BACOVA_05130 RNA methyltransferase, RsmE family 0.37 BACOVA_04414 endonuclease III low > 96
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_3055 RNA methyltransferase, RsmE family 0.38 Echvi_1263 endonuclease III low > 79
Bacteroides thetaiotaomicron VPI-5482 0.17 BT4328 conserved hypothetical protein (NCBI ptt file) 0.37 BT1671 endonuclease III (NCBI ptt file) low > 81
Bosea sp. OAE506 0.17 ABIE41_RS23100 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.58 ABIE41_RS03410 endonuclease III low > 77
Brevundimonas sp. GW460-12-10-14-LB2 0.17 A4249_RS00350 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.53 A4249_RS15000 endonuclease III
Synechococcus elongatus PCC 7942 0.15 Synpcc7942_0806 hypothetical protein 0.30 Synpcc7942_0447 nth DNA-(apurinic or apyrimidinic site) lyase / endonuclease III low > 38
Magnetospirillum magneticum AMB-1 0.15 AMB_RS01240 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.57 AMB_RS21105 endonuclease III low > 64
Cellulophaga baltica 18 0.15 M666_RS12115 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.31 M666_RS13940 endonuclease III low > 67
Sphingobium sp. HT1-2 0.14 GFF1069 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) 0.59 GFF4040 Endonuclease III (EC 4.2.99.18) low > 95
Mycobacterium tuberculosis H37Rv 0.14 Rv2372c Conserved hypothetical protein 0.30 Rv3674c Probable endonuclease III Nth (DNA-(apurinic or apyrimidinic site)lyase) (AP lyase) (AP endonuclease class I) (endodeoxyribonuclease (apurinic or apyrimidinic)) (deoxyribonuclease (apurinic or apyrimidinic)) low > 58
Bifidobacterium breve UCC2003 0.11 BBR_RS15150 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.33 BBR_RS11790 endonuclease III low > 34
Rhodospirillum rubrum S1H 0.11 Rru_A0571 hypothetical protein (NCBI) 0.55 Rru_A0153 Endonuclease III/Nth (NCBI) low > 58

Not shown: 5 genomes with orthologs for CSW01_02495 only; 2 genomes with orthologs for CSW01_05145 only