Conservation of cofitness between CSW01_01515 and CSW01_01495 in Vibrio cholerae E7946 ATCC 55056

101 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01515 type II 3-dehydroquinate dehydratase 1.0 CSW01_01495 tRNA dihydrouridine synthase DusB 0.56 1
Shewanella sp. ANA-3 0.71 Shewana3_0511 3-dehydroquinate dehydratase (RefSeq) 0.63 Shewana3_0399 nifR3 family TIM-barrel protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.70 SO0512 aroQ 3-dehydroquinate dehydratase, type II (NCBI ptt file) 0.64 SO0394 conserved hypothetical protein (NCBI ptt file) low > 76
Enterobacter asburiae PDN3 0.68 EX28DRAFT_3306 3-dehydroquinate dehydratase (EC 4.2.1.10) 0.67 EX28DRAFT_3313 putative TIM-barrel protein, nifR3 family
Enterobacter sp. TBS_079 0.68 MPMX20_04162 3-dehydroquinate dehydratase 0.68 MPMX20_04169 tRNA-dihydrouridine synthase B low > 85
Shewanella loihica PV-4 0.67 Shew_3363 3-dehydroquinate dehydratase, type II (RefSeq) 0.61 Shew_0330 nifR3 family TIM-barrel protein (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.66 MIT1002_03941 3-dehydroquinate dehydratase 0.69 MIT1002_03957 putative tRNA-dihydrouridine synthase
Shewanella amazonensis SB2B 0.65 Sama_3194 3-dehydroquinate dehydratase (RefSeq) 0.65 Sama_3225 tRNA-dihydrouridine synthase B (RefSeq) low > 62
Klebsiella pneumoniae MKP103 0.64 KDGMDA_06295 type II 3-dehydroquinate dehydratase 0.68 KDGMDA_06325 tRNA dihydrouridine synthase DusB low > 95
Pseudomonas sp. DMC3 0.64 GFF3316 3-dehydroquinate dehydratase 1 0.56 GFF3310 tRNA-dihydrouridine synthase B
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_4399 3-dehydroquinate dehydratase 0.56 Psyr_4404 tRNA-U20-dihydrouridine synthase
Pseudomonas aeruginosa MRSN321 0.63 DY961_RS10010 aroQ;go_function=3-dehydroquinate type II 3-dehydroquinate dehydratase 0.57 DY961_RS10040 dusB;go_function=catalytic tRNA dihydrouridine synthase DusB
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_4399 3-dehydroquinate dehydratase 0.56 Psyr_4404 tRNA-U20-dihydrouridine synthase
Pseudomonas sp. BP01 0.63 JOY50_RS23135 aroQ type II 3-dehydroquinate dehydratase 0.56 JOY50_RS17635 dusB tRNA dihydrouridine synthase DusB low > 84
Pseudomonas aeruginosa PA14 0.63 IKLFDK_29330 type II 3-dehydroquinate dehydratase 0.58 IKLFDK_29300 tRNA dihydrouridine synthase DusB
Pseudomonas aeruginosa PUPa3 0.63 DQ20_RS52045 aroQ;go_function=3-dehydroquinate type II 3-dehydroquinate dehydratase 0.57 DQ20_RS52015 dusB;go_function=catalytic tRNA dihydrouridine synthase DusB
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_50 3-dehydroquinate dehydratase II (EC 4.2.1.10) 0.56 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) low > 87
Pseudomonas lactucae CFBP13502 0.63 GEMAOFIL_00827 3-dehydroquinate dehydratase 1 0.56 GEMAOFIL_00822 tRNA-dihydrouridine synthase B low > 96
Pseudomonas segetis P6 0.63 ACVTMO_RS20335 aroQ type II 3-dehydroquinate dehydratase 0.57 ACVTMO_RS20360 dusB tRNA dihydrouridine synthase DusB low > 75
Pseudomonas fluorescens FW300-N1B4 0.63 Pf1N1B4_1307 3-dehydroquinate dehydratase II (EC 4.2.1.10) 0.55 Pf1N1B4_1313 tRNA dihydrouridine synthase B (EC 1.-.-.-) low > 87
Pseudomonas fluorescens SBW25 0.62 PFLU_RS03050 type II 3-dehydroquinate dehydratase 0.55 PFLU_RS03025 tRNA dihydrouridine synthase DusB
Pseudomonas sp. SVBP6 0.62 COO64_RS18370 aroQ type II 3-dehydroquinate dehydratase 0.54 COO64_RS18315 dusB tRNA dihydrouridine synthase DusB low > 93
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS03050 type II 3-dehydroquinate dehydratase 0.55 PFLU_RS03025 tRNA dihydrouridine synthase DusB
Pseudomonas putida KT2440 0.62 PP_0560 3-dehydroquinate dehydratase 1, type II 0.56 PP_4820 tRNA-dihydrouridine synthase B
Pseudomonas sp. S08-1 0.62 OH686_07585 3-dehydroquinate dehydratase, type II 0.57 OH686_07610 tRNA-dihydrouridine synthase DusB low > 80
Pseudomonas fluorescens FW300-N2E2 0.62 Pf6N2E2_3510 3-dehydroquinate dehydratase II (EC 4.2.1.10) 0.56 Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-)
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_13685 3-dehydroquinate dehydratase 0.55 AO353_13660 tRNA-dihydrouridine synthase B low > 101
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_08185 3-dehydroquinate dehydratase 0.56 AO356_08215 tRNA-dihydrouridine synthase B
Pseudomonas stutzeri RCH2 0.62 Psest_1021 3-dehydroquinate dehydratase, type II 0.56 Psest_1016 putative TIM-barrel protein, nifR3 family
Pseudomonas simiae WCS417 0.61 PS417_02975 3-dehydroquinate dehydratase 0.55 PS417_02950 tRNA-dihydrouridine synthase B low > 88
Acinetobacter baumannii LAC-4 0.61 RR41_RS07855 type II 3-dehydroquinate dehydratase 0.53 RR41_RS04995 tRNA dihydrouridine synthase DusB
Pseudomonas sp. RS175 0.61 PFR28_05222 3-dehydroquinate dehydratase 1 0.56 PFR28_05216 tRNA-dihydrouridine synthase B
Serratia liquefaciens MT49 0.61 IAI46_22745 type II 3-dehydroquinate dehydratase 0.68 IAI46_22775 tRNA dihydrouridine synthase DusB low > 87
Pseudomonas orientalis W4I3 0.61 QF045_RS06010 type II 3-dehydroquinate dehydratase 0.55 QF045_RS05985 tRNA dihydrouridine synthase DusB low > 93
Pectobacterium carotovorum WPP14 0.61 HER17_RS20195 type II 3-dehydroquinate dehydratase 0.66 HER17_RS20235 tRNA dihydrouridine synthase DusB low > 75
Pantoea sp. MT58 0.60 IAI47_02415 type II 3-dehydroquinate dehydratase 0.66 IAI47_02385 tRNA dihydrouridine synthase DusB
Rahnella sp. WP5 0.60 EX31_RS12215 type II 3-dehydroquinate dehydratase 0.68 EX31_RS12180 tRNA dihydrouridine synthase DusB low > 89
Pantoea agglomerans CFBP13505 P0401 0.60 PagCFBP13505_RS11010 type II 3-dehydroquinate dehydratase 0.66 PagCFBP13505_RS10980 tRNA dihydrouridine synthase DusB
Ralstonia solanacearum UW163 0.59 UW163_RS07640 type II 3-dehydroquinate dehydratase 0.54 UW163_RS01890 tRNA dihydrouridine synthase DusB
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS05985 type II 3-dehydroquinate dehydratase 0.54 RALBFv3_RS11695 tRNA dihydrouridine synthase DusB
Acinetobacter radioresistens SK82 0.59 MPMX26_01371 3-dehydroquinate dehydratase 0.51 MPMX26_02127 tRNA-dihydrouridine synthase B
Paraburkholderia graminis OAS925 0.59 ABIE53_003566 3-dehydroquinate dehydratase-2 0.53 ABIE53_003489 tRNA-dihydrouridine synthase B low > 113
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS17005 3-dehydroquinate dehydratase 0.52 BPHYT_RS16585 tRNA-dihydrouridine synthase B
Erwinia tracheiphila HP pepo 2.2 0.59 IJEDHG_13535 aroQ type II 3-dehydroquinate dehydratase 0.67 IJEDHG_13500 dusB tRNA dihydrouridine synthase DusB
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_06285 3-dehydroquinate dehydratase 0.55 H281DRAFT_04249 tRNA-U20-dihydrouridine synthase low > 103
Erwinia amylovora T8 0.59 OLJFJH_06885 type II 3-dehydroquinate dehydratase 0.69 OLJFJH_06855 tRNA dihydrouridine synthase DusB
Dickeya dadantii 3937 0.58 DDA3937_RS01405 type II 3-dehydroquinate dehydratase 0.67 DDA3937_RS01375 tRNA dihydrouridine synthase DusB
Methylophilus sp. DMC18 0.58 GFF2037 3-dehydroquinate dehydratase 0.55 GFF1646 tRNA-dihydrouridine synthase B
Ralstonia solanacearum PSI07 0.58 RPSI07_RS11260 type II 3-dehydroquinate dehydratase 0.55 RPSI07_RS21520 tRNA dihydrouridine synthase DusB low > 81
Ralstonia sp. UNC404CL21Col 0.57 ABZR87_RS01645 type II 3-dehydroquinate dehydratase 0.55 ABZR87_RS07650 tRNA dihydrouridine synthase DusB low > 80
Dickeya dianthicola ME23 0.57 DZA65_RS01385 type II 3-dehydroquinate dehydratase 0.68 DZA65_RS01355 tRNA dihydrouridine synthase DusB
Dickeya dianthicola 67-19 0.57 HGI48_RS01325 type II 3-dehydroquinate dehydratase 0.68 HGI48_RS01295 tRNA dihydrouridine synthase DusB
Ralstonia solanacearum GMI1000 0.57 RS_RS13930 3-dehydroquinate dehydratase 1 0.55 RS_RS02515 tRNA dihydrouridine synthase DusB
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS27160 type II 3-dehydroquinate dehydratase 0.55 QEN71_RS26770 tRNA dihydrouridine synthase DusB low > 153
Marinobacter adhaerens HP15 0.56 HP15_3220 dehydroquinase, class II 0.60 HP15_3225 tRNA-dihydrouridine synthase B
Dechlorosoma suillum PS 0.56 Dsui_0387 3-dehydroquinate dehydratase, type II 0.53 Dsui_1593 putative TIM-barrel protein, nifR3 family
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_0157 3-dehydroquinate dehydratase (EC 4.2.1.10) 0.63 B158DRAFT_0164 tRNA-U20-dihydrouridine synthase
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS17690 3-dehydroquinate dehydratase 0.53 RR42_RS02730 tRNA-dihydrouridine synthase B low > 128
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_16835 aroQ type II 3-dehydroquinate dehydratase 0.52 OKGIIK_11770 dusB tRNA dihydrouridine synthase DusB low > 53
Lysobacter sp. OAE881 0.53 ABIE51_RS17715 type II 3-dehydroquinate dehydratase 0.56 ABIE51_RS16450 tRNA dihydrouridine synthase DusB low > 62
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS17085 type II 3-dehydroquinate dehydratase 0.52 ABZR86_RS11525 tRNA dihydrouridine synthase DusB low > 74
Rhodanobacter sp000427505 FW510-R12 0.52 LRK53_RS01620 type II 3-dehydroquinate dehydratase 0.52 LRK53_RS16445 tRNA dihydrouridine synthase DusB low > 59
Variovorax sp. SCN45 0.52 GFF7499 3-dehydroquinate dehydratase II (EC 4.2.1.10) 0.52 GFF2144 tRNA-dihydrouridine synthase DusB
Rhodanobacter denitrificans MT42 0.51 LRK55_RS06540 type II 3-dehydroquinate dehydratase 0.53 LRK55_RS11875 tRNA dihydrouridine synthase DusB low > 63
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS06795 type II 3-dehydroquinate dehydratase 0.53 LRK54_RS12140 tRNA dihydrouridine synthase DusB low > 59
Agrobacterium fabrum C58 0.50 Atu4531 3-dehydroquinate dehydratase 0.37 Atu1444 nitrogen regulation protein low > 89
Synechococcus elongatus PCC 7942 0.50 Synpcc7942_0915 aroQ 3-dehydroquinate dehydratase 0.24 Synpcc7942_0283 Dihydrouridine synthase TIM-barrel protein nifR3
Magnetospirillum magneticum AMB-1 0.49 AMB_RS13610 type II 3-dehydroquinate dehydratase 0.41 AMB_RS11940 tRNA dihydrouridine synthase DusB
Azospirillum sp. SherDot2 0.49 MPMX19_00782 3-dehydroquinate dehydratase 0.38 MPMX19_01110 tRNA-dihydrouridine synthase B
Synechocystis sp000284455 PCC 6803 0.48 SGL_RS06095 type II 3-dehydroquinate dehydratase 0.32 SGL_RS14330 tRNA dihydrouridine synthase DusB
Bacteroides thetaiotaomicron VPI-5482 0.48 BT2842 3-dehydroquinate dehydratase (NCBI ptt file) 0.31 BT3073 putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file)
Variovorax sp. OAS795 0.48 ABID97_RS10255 type II 3-dehydroquinate dehydratase 0.53 ABID97_RS24735 tRNA dihydrouridine synthase DusB
Dinoroseobacter shibae DFL-12 0.48 Dshi_1551 3-dehydroquinate dehydratase, type II (RefSeq) 0.32 Dshi_1576 putative TIM-barrel protein, nifR3 family (RefSeq)
Sphingobium sp. HT1-2 0.47 GFF357 3-dehydroquinate dehydratase II (EC 4.2.1.10) 0.36 GFF1150 tRNA-dihydrouridine synthase DusB
Sinorhizobium meliloti 1021 0.47 SMc01343 3-dehydroquinate dehydratase 0.36 SMc01041 NIFR3-like protein
Acidovorax sp. GW101-3H11 0.46 Ac3H11_29 3-dehydroquinate dehydratase II (EC 4.2.1.10) 0.46 Ac3H11_3996 tRNA dihydrouridine synthase B (EC 1.-.-.-) low > 79
Rhodospirillum rubrum S1H 0.46 Rru_A2433 3-dehydroquinate dehydratase (NCBI) 0.32 Rru_A1676 Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI)
Azospirillum brasilense Sp245 0.46 AZOBR_RS12025 3-dehydroquinate dehydratase 0.37 AZOBR_RS14420 tRNA-dihydrouridine synthase
Xanthobacter sp. DMC5 0.46 GFF234 3-dehydroquinate dehydratase 0.36 GFF850 tRNA-dihydrouridine synthase B
Cellulophaga baltica 18 0.46 M666_RS11325 type II 3-dehydroquinate dehydratase 0.28 M666_RS04760 tRNA dihydrouridine synthase DusB
Phaeobacter inhibens DSM 17395 0.46 PGA1_c15600 3-dehydroquinate dehydratase AroQ 0.36 PGA1_c14770 tRNA-dihydrouridine synthase DusB
Bacteroides stercoris CC31F 0.46 HMPREF1181_RS01245 type II 3-dehydroquinate dehydratase 0.30 HMPREF1181_RS01530 tRNA dihydrouridine synthase DusB low > 56
Bacteroides ovatus ATCC 8483 0.45 BACOVA_02122 3-dehydroquinate dehydratase, type II 0.31 BACOVA_02724 TIM-barrel protein, nifR3 family low > 96
Sphingomonas koreensis DSMZ 15582 0.44 Ga0059261_0290 3-dehydroquinate dehydratase (EC 4.2.1.10) 0.37 Ga0059261_0140 tRNA-U20-dihydrouridine synthase low > 68
Rhizobium sp. OAE497 0.44 ABIE40_RS07500 type II 3-dehydroquinate dehydratase 0.37 ABIE40_RS09080 tRNA dihydrouridine synthase DusB
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS01935 3-dehydroquinate dehydratase 0.53 HSERO_RS02050 tRNA-dihydrouridine synthase B low > 78
Mycobacterium tuberculosis H37Rv 0.43 Rv2537c 3-dehydroquinate dehydratase AroD (AROQ) (3-dehydroquinase) (type II dhqase) 0.25 Rv0823c Possible transcriptional regulatory protein
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS07995 type II 3-dehydroquinate dehydratase 0.33 A4249_RS04810 tRNA dihydrouridine synthase DusB low > 48
Phocaeicola dorei CL03T12C01 0.43 ABI39_RS07005 type II 3-dehydroquinate dehydratase 0.32 ABI39_RS06125 tRNA dihydrouridine synthase DusB low > 72
Phocaeicola vulgatus CL09T03C04 0.43 HMPREF1058_RS09675 type II 3-dehydroquinate dehydratase 0.31 HMPREF1058_RS10945 tRNA dihydrouridine synthase DusB low > 67
Parabacteroides merdae CL09T00C40 0.43 HMPREF1078_RS04700 type II 3-dehydroquinate dehydratase 0.32 HMPREF1078_RS05375 tRNA dihydrouridine synthase DusB low > 61
Castellaniella sp019104865 MT123 0.43 ABCV34_RS11545 type II 3-dehydroquinate dehydratase 0.53 ABCV34_RS07960 tRNA dihydrouridine synthase DusB
Rhodopseudomonas palustris CGA009 0.43 TX73_012605 type II 3-dehydroquinate dehydratase 0.33 TX73_013410 tRNA dihydrouridine synthase DusB
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_1810 3-dehydroquinate dehydratase, type II 0.30 Echvi_1531 putative TIM-barrel protein, nifR3 family
Mucilaginibacter yixingensis YX-36 DSM 26809 0.42 ABZR88_RS10225 type II 3-dehydroquinate dehydratase 0.30 ABZR88_RS22340 tRNA dihydrouridine synthase DusB
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF5233 3-dehydroquinate dehydratase II (EC 4.2.1.10) 0.47 GFF634 tRNA dihydrouridine synthase B (EC 1.-.-.-)
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_01959 3-dehydroquinate dehydratase 0.29 CCNA_01813 tRNA-dihydrouridine synthase 0.56 57
Caulobacter crescentus NA1000 0.42 CCNA_01959 3-dehydroquinate dehydratase 0.29 CCNA_01813 tRNA-dihydrouridine synthase low > 66
Desulfovibrio vulgaris Hildenborough JW710 0.39 DVU1665 aroQ 3-dehydroquinate dehydratase, type II (TIGR) 0.19 DVU0661 dihydrouridine synthase family protein (TIGR)
Fusobacterium nucleatum SB010 0.39 HUW76_10440 type II 3-dehydroquinate dehydratase 0.23 HUW76_04330 tRNA-dihydrouridine synthase low > 35
Pedobacter sp. GW460-11-11-14-LB5 0.39 CA265_RS09515 type II 3-dehydroquinate dehydratase 0.30 CA265_RS21125 tRNA dihydrouridine synthase DusB
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_00845 type II 3-dehydroquinate dehydratase 0.31 CA264_17860 tRNA dihydrouridine synthase DusB

Not shown: 5 genomes with orthologs for CSW01_01515 only; 15 genomes with orthologs for CSW01_01495 only