Conservation of cofitness between CSW01_05985 and CSW01_00560 in Vibrio cholerae E7946 ATCC 55056

115 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05985 thioredoxin-disulfide reductase 1.0 CSW01_00560 DNA polymerase I 0.53 12
Shewanella amazonensis SB2B 0.86 Sama_1769 thioredoxin reductase (RefSeq) 0.63 Sama_0093 DNA-directed DNA polymerase (RefSeq) — —
Shewanella oneidensis MR-1 0.85 SO2303 trxB thioredoxin reductase (NCBI ptt file) 0.62 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Shewanella sp. ANA-3 0.84 Shewana3_2047 thioredoxin reductase (RefSeq) 0.62 Shewana3_4109 DNA polymerase I (RefSeq) — —
Shewanella loihica PV-4 0.84 Shew_2028 thioredoxin reductase (RefSeq) 0.63 Shew_3714 DNA polymerase I (RefSeq) — —
Escherichia coli ECOR38 0.84 HEPCGN_22930 trxB thioredoxin-disulfide reductase 0.64 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli Nissle 1917 0.84 ECOLIN_RS04725 thioredoxin-disulfide reductase 0.64 ECOLIN_RS22270 DNA polymerase I — —
Escherichia fergusonii Becca 0.84 EFB2_03173 Thioredoxin reductase 0.64 EFB2_04753 DNA polymerase I — —
Escherichia coli ECRC101 0.83 MCAODC_24970 trxB thioredoxin-disulfide reductase 0.64 MCAODC_04650 polA DNA polymerase I — —
Rahnella sp. WP5 0.83 EX31_RS18535 thioredoxin-disulfide reductase 0.65 EX31_RS15905 DNA polymerase I low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.83 OHPLBJKB_02780 Thioredoxin reductase 0.64 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli ECRC98 0.83 JDDGAC_09390 trxB thioredoxin-disulfide reductase 0.64 JDDGAC_17775 polA DNA polymerase I — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF4892 Thioredoxin reductase (EC 1.8.1.9) 0.63 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Escherichia coli BW25113 0.83 b0888 trxB thioredoxin reductase, FAD/NAD(P)-binding (NCBI) 0.64 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli ECRC100 0.83 OKFHMN_05580 trxB thioredoxin-disulfide reductase 0.64 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECOR27 0.83 NOLOHH_22150 trxB thioredoxin-disulfide reductase 0.64 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli ECRC62 0.83 BNILDI_20405 trxB thioredoxin-disulfide reductase 0.64 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli BL21 0.83 ECD_00892 thioredoxin reductase, FAD/NAD(P)-binding 0.64 ECD_03749 5 — —
Escherichia coli ECRC99 0.83 KEDOAH_22155 trxB thioredoxin-disulfide reductase 0.64 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC102 0.83 NIAGMN_03300 trxB thioredoxin-disulfide reductase 0.64 NIAGMN_11905 polA DNA polymerase I — —
Pectobacterium carotovorum WPP14 0.83 HER17_RS12365 thioredoxin-disulfide reductase 0.65 HER17_RS21470 DNA polymerase I — —
Serratia liquefaciens MT49 0.83 IAI46_08550 thioredoxin-disulfide reductase 0.66 IAI46_24985 DNA polymerase I low > 87
Enterobacter sp. TBS_079 0.83 MPMX20_01550 Thioredoxin reductase 0.64 MPMX20_04601 DNA polymerase I low > 85
Klebsiella pneumoniae MKP103 0.83 KDGMDA_17885 thioredoxin-disulfide reductase 0.63 KDGMDA_08970 DNA polymerase I — —
Klebsiella michiganensis M5al 0.83 BWI76_RS09645 thioredoxin-disulfide reductase 0.63 BWI76_RS00355 DNA polymerase I low > 92
Pantoea agglomerans CFBP13505 P0401 0.83 PagCFBP13505_RS04410 thioredoxin-disulfide reductase 0.64 PagCFBP13505_RS18920 DNA polymerase I low > 74
Pantoea sp. MT58 0.83 IAI47_12920 thioredoxin-disulfide reductase 0.65 IAI47_00430 DNA polymerase I low > 76
Alteromonas macleodii MIT1002 0.82 MIT1002_01838 Thioredoxin reductase 0.62 MIT1002_00014 DNA polymerase I — —
Enterobacter asburiae PDN3 0.82 EX28DRAFT_2044 thioredoxin-disulfide reductase 0.64 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Dickeya dadantii 3937 0.82 DDA3937_RS09585 thioredoxin-disulfide reductase 0.63 DDA3937_RS00105 DNA polymerase I — —
Dickeya dianthicola 67-19 0.82 HGI48_RS09600 thioredoxin-disulfide reductase 0.63 HGI48_RS21260 DNA polymerase I — —
Dickeya dianthicola ME23 0.81 DZA65_RS09910 thioredoxin-disulfide reductase 0.62 DZA65_RS22235 DNA polymerase I — —
Erwinia tracheiphila HP pepo 2.2 0.81 IJEDHG_20210 trxB thioredoxin-disulfide reductase 0.64 IJEDHG_10990 polA DNA polymerase I — —
Erwinia tracheiphila SCR3 0.81 LU632_RS09730 trxB thioredoxin-disulfide reductase 0.64 LU632_RS23870 polA DNA polymerase I — —
Erwinia amylovora T8 0.80 OLJFJH_16190 thioredoxin-disulfide reductase 0.64 OLJFJH_05470 DNA polymerase I low > 58
Kangiella aquimarina DSM 16071 0.78 B158DRAFT_1829 thioredoxin-disulfide reductase 0.59 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas sp. S08-1 0.78 OH686_00255 thioredoxin-disulfide reductase 0.57 OH686_12215 DNA polymerase I low > 80
Pseudomonas aeruginosa PUPa3 0.77 DQ20_RS35165 trxB;go_function=thioredoxin-disulfide thioredoxin-disulfide reductase 0.58 DQ20_RS58195 polA;go_function=nucleic DNA polymerase I low > 101
Pseudomonas aeruginosa PA14 0.77 IKLFDK_13130 thioredoxin-disulfide reductase 0.58 IKLFDK_25945 DNA polymerase I low > 98
Pseudomonas aeruginosa MRSN321 0.77 DY961_RS04140 trxB;go_function=thioredoxin-disulfide thioredoxin-disulfide reductase 0.58 DY961_RS25765 polA;go_function=nucleic DNA polymerase I low > 100
Pseudomonas segetis P6 0.77 ACVTMO_RS12595 trxB thioredoxin-disulfide reductase 0.57 ACVTMO_RS01575 polA DNA polymerase I low > 75
Pseudomonas fluorescens FW300-N2C3 0.76 AO356_16715 thioredoxin reductase 0.55 AO356_11465 DNA polymerase I — —
Pseudomonas fluorescens FW300-N2E3 0.76 AO353_05015 thioredoxin reductase 0.56 AO353_10930 DNA polymerase I — —
Pseudomonas sp. RS175 0.76 PFR28_00202 Glucosaminate ammonia-lyase 0.54 PFR28_04624 DNA polymerase I — —
Pseudomonas fluorescens FW300-N2E2 0.76 Pf6N2E2_5268 Thioredoxin reductase (EC 1.8.1.9) 0.54 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.76 Psyr_1016 Thioredoxin reductase 0.55 Psyr_0270 DNA polymerase I — —
Pseudomonas syringae pv. syringae B728a 0.76 Psyr_1016 Thioredoxin reductase 0.55 Psyr_0270 DNA polymerase I — —
Pseudomonas stutzeri RCH2 0.76 Psest_2031 thioredoxin-disulfide reductase 0.58 Psest_4219 DNA polymerase I — —
Pseudomonas orientalis W4I3 0.76 QF045_RS25765 thioredoxin-disulfide reductase 0.56 QF045_RS03350 DNA polymerase I — —
Pseudomonas lactucae CFBP13502 0.76 GEMAOFIL_04854 Glucosaminate ammonia-lyase 0.55 GEMAOFIL_00284 DNA polymerase I — —
Pseudomonas fluorescens FW300-N1B4 0.76 Pf1N1B4_1046 Thioredoxin reductase (EC 1.8.1.9) 0.55 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas simiae WCS417 0.76 PS417_23515 thioredoxin reductase 0.56 PS417_00405 DNA polymerase I — —
Pseudomonas sp. SVBP6 0.75 COO64_RS03515 trxB thioredoxin-disulfide reductase 0.57 COO64_RS02475 polA DNA polymerase I — —
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_4983 Thioredoxin reductase (EC 1.8.1.9) 0.54 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS25330 thioredoxin-disulfide reductase 0.55 PFLU_RS00395 DNA polymerase I — —
Pseudomonas fluorescens SBW25 0.75 PFLU_RS25330 thioredoxin-disulfide reductase 0.55 PFLU_RS00395 DNA polymerase I — —
Pseudomonas sp. DMC3 0.75 GFF1857 Glucosaminate ammonia-lyase 0.55 GFF631 DNA polymerase I — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.75 GFF773 Thioredoxin reductase (EC 1.8.1.9) 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas putida KT2440 0.75 PP_0786 thioredoxin reductase 0.58 PP_0123 DNA polymerase I, 5 — —
Pseudomonas sp. BP01 0.75 JOY50_RS19350 trxB thioredoxin-disulfide reductase 0.58 JOY50_RS21110 polA DNA polymerase I — —
Methylophilus sp. DMC18 0.74 GFF347 Thioredoxin reductase 0.52 GFF1658 DNA polymerase I — —
Variovorax sp. SCN45 0.74 GFF6038 Thioredoxin reductase (EC 1.8.1.9) 0.48 GFF4006 DNA polymerase I (EC 2.7.7.7) — —
Lysobacter sp. OAE881 0.74 ABIE51_RS11465 thioredoxin-disulfide reductase 0.49 ABIE51_RS02010 DNA polymerase I — —
Marinobacter adhaerens HP15 0.74 HP15_2076 secreted protein containing thioredoxin reductase domain 0.52 HP15_293 DNA polymerase I — —
Dechlorosoma suillum PS 0.73 Dsui_1689 thioredoxin-disulfide reductase 0.52 Dsui_0459 DNA polymerase I — —
Variovorax sp. OAS795 0.73 ABID97_RS07815 thioredoxin-disulfide reductase 0.47 ABID97_RS09180 DNA polymerase I — —
Xanthomonas campestris pv. campestris strain 8004 0.73 Xcc-8004.2750.1 Thioredoxin reductase (EC 1.8.1.9) 0.49 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Acidovorax sp. GW101-3H11 0.73 Ac3H11_1700 Thioredoxin reductase (EC 1.8.1.9) 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Herbaspirillum seropedicae SmR1 0.73 HSERO_RS09495 thioredoxin reductase 0.53 HSERO_RS02260 DNA polymerase I — —
Acinetobacter radioresistens SK82 0.73 MPMX26_02425 Thioredoxin reductase 0.46 MPMX26_00574 DNA polymerase I low > 36
Rhodanobacter sp000427505 FW510-R12 0.72 LRK53_RS11755 thioredoxin-disulfide reductase 0.52 LRK53_RS01570 DNA polymerase I — —
Rhodanobacter denitrificans MT42 0.72 LRK55_RS17485 thioredoxin-disulfide reductase 0.52 LRK55_RS06585 DNA polymerase I — —
Rhodanobacter sp. FW510-T8 0.72 OKGIIK_07630 trxB thioredoxin-disulfide reductase 0.52 OKGIIK_16785 polA DNA polymerase I — —
Rhodanobacter denitrificans FW104-10B01 0.72 LRK54_RS17260 thioredoxin-disulfide reductase 0.52 LRK54_RS06840 DNA polymerase I — —
Paraburkholderia graminis OAS925 0.72 ABIE53_001285 thioredoxin reductase (NADPH) 0.51 ABIE53_004852 DNA polymerase-1 — —
Castellaniella sp019104865 MT123 0.71 ABCV34_RS07235 thioredoxin-disulfide reductase 0.47 ABCV34_RS02195 DNA polymerase I — —
Paraburkholderia bryophila 376MFSha3.1 0.71 H281DRAFT_00173 thioredoxin reductase (NADPH) 0.51 H281DRAFT_06022 DNA polymerase I — —
Cupriavidus basilensis FW507-4G11 0.71 RR42_RS04315 thioredoxin reductase 0.51 RR42_RS15050 DNA polymerase I — —
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS05070 thioredoxin reductase 0.51 BPHYT_RS33610 DNA polymerase I — —
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS03380 thioredoxin-disulfide reductase 0.52 QEN71_RS17885 DNA polymerase I — —
Acinetobacter baumannii LAC-4 0.70 RR41_RS14910 thioredoxin-disulfide reductase 0.46 RR41_RS15915 DNA polymerase I — —
Ralstonia solanacearum GMI1000 0.70 RS_RS11755 thioredoxin-disulfide reductase 0.52 RS_RS11195 DNA polymerase I — —
Ralstonia sp. UNC404CL21Col 0.69 ABZR87_RS16065 thioredoxin-disulfide reductase 0.52 ABZR87_RS15680 DNA polymerase I — —
Ralstonia solanacearum UW163 0.69 UW163_RS09505 thioredoxin-disulfide reductase 0.52 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum IBSBF1503 0.69 RALBFv3_RS04165 thioredoxin-disulfide reductase 0.52 RALBFv3_RS03750 DNA polymerase I — —
Ralstonia solanacearum PSI07 0.69 RPSI07_RS13185 thioredoxin-disulfide reductase 0.52 RPSI07_RS13480 DNA polymerase I — —
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS01805 thioredoxin-disulfide reductase 0.52 ABZR86_RS17015 DNA polymerase I — —
Magnetospirillum magneticum AMB-1 0.56 AMB_RS03410 thioredoxin-disulfide reductase 0.39 AMB_RS21305 DNA polymerase I — —
Phaeobacter inhibens DSM 17395 0.56 PGA1_c24780 thioredoxin reductase TrxB 0.39 PGA1_c31780 DNA polymerase I — —
Bosea sp. OAE506 0.55 ABIE41_RS11885 thioredoxin-disulfide reductase 0.34 ABIE41_RS03570 DNA polymerase I — —
Dinoroseobacter shibae DFL-12 0.55 Dshi_2654 thioredoxin reductase (RefSeq) 0.39 Dshi_2909 DNA polymerase I (RefSeq) — —
Caulobacter crescentus NA1000 0.54 CCNA_02964 thioredoxin-disulfide reductase 0.39 CCNA_03577 DNA polymerase I — —
Caulobacter crescentus NA1000 Δfur 0.54 CCNA_02964 thioredoxin-disulfide reductase 0.39 CCNA_03577 DNA polymerase I — —
Azospirillum brasilense Sp245 0.54 AZOBR_RS12935 thioredoxin reductase 0.38 AZOBR_RS30685 DNA polymerase — —
Rhizobium sp. OAE497 0.54 ABIE40_RS12865 thioredoxin-disulfide reductase 0.38 ABIE40_RS00490 DNA polymerase I — —
Agrobacterium fabrum C58 0.53 Atu2185 thioredoxin reductase 0.38 Atu0110 DNA polymerase I — —
Azospirillum sp. SherDot2 0.53 MPMX19_00232 Thioredoxin reductase 0.39 MPMX19_04869 DNA polymerase I — —
Sinorhizobium meliloti 1021 0.53 SMc01224 thioredoxin reductase 0.29 SMc02850 DNA polymerase I — —
Pedobacter sp. GW460-11-11-14-LB5 0.52 CA265_RS10630 thioredoxin-disulfide reductase 0.34 CA265_RS19630 DNA polymerase I — —
Sphingomonas koreensis DSMZ 15582 0.52 Ga0059261_4182 thioredoxin-disulfide reductase 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) — —
Sphingobium sp. HT1-2 0.51 GFF1515 Thioredoxin reductase (EC 1.8.1.9) 0.35 GFF3778 DNA polymerase I (EC 2.7.7.7) — —
Rhodospirillum rubrum S1H 0.51 Rru_A2898 Thioredoxin reductase (NCBI) 0.34 Rru_A3514 DNA polymerase A (NCBI) — —
Xanthobacter sp. DMC5 0.51 GFF4684 Thioredoxin reductase 0.37 GFF1973 DNA polymerase I — —
Brevundimonas sp. GW460-12-10-14-LB2 0.50 A4249_RS00680 thioredoxin-disulfide reductase 0.38 A4249_RS13840 DNA polymerase I — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.50 ABZR88_RS10305 thioredoxin-disulfide reductase 0.34 ABZR88_RS20185 DNA polymerase I — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.49 Echvi_3438 thioredoxin-disulfide reductase 0.36 Echvi_1032 DNA polymerase I — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.48 CA264_04890 thioredoxin-disulfide reductase 0.35 CA264_16535 DNA polymerase I — —
Bacteroides ovatus ATCC 8483 0.48 BACOVA_05140 thioredoxin-disulfide reductase 0.36 BACOVA_01357 DNA-directed DNA polymerase — —
Cellulophaga baltica 18 0.48 M666_RS10735 thioredoxin-disulfide reductase 0.35 M666_RS07555 DNA polymerase I — —
Bacteroides thetaiotaomicron VPI-5482 0.47 BT4336 thioredoxin reductase (NCBI ptt file) 0.36 BT3260 DNA polymerase I (NCBI ptt file) — —
Phocaeicola dorei CL03T12C01 0.47 ABI39_RS18240 thioredoxin-disulfide reductase 0.36 ABI39_RS05440 DNA polymerase I — —
Phocaeicola vulgatus CL09T03C04 0.47 HMPREF1058_RS05865 thioredoxin-disulfide reductase 0.35 HMPREF1058_RS11500 DNA polymerase I — —
Parabacteroides merdae CL09T00C40 0.46 HMPREF1078_RS13710 thioredoxin-disulfide reductase 0.37 HMPREF1078_RS06335 DNA polymerase I — —
Bacteroides stercoris CC31F 0.46 HMPREF1181_RS05900 thioredoxin-disulfide reductase 0.36 HMPREF1181_RS02070 DNA polymerase I — —
Mycobacterium tuberculosis H37Rv 0.45 Rv3913 Probable thioredoxin reductase TrxB2 (TRXR) (TR) 0.18 Rv1629 Probable DNA polymerase I PolA — —
Bifidobacterium breve UCC2003 0.39 BBR_RS20455 thioredoxin-disulfide reductase 0.24 BBR_RS14315 DNA polymerase I low > 34

Not shown: 3 genomes with orthologs for CSW01_05985 only; 3 genomes with orthologs for CSW01_00560 only