Conservation of cofitness between BPHYT_RS16835 and BPHYT_RS33875 in Burkholderia phytofirmans PsJN

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16835 glyceraldehyde-3-phosphate dehydrogenase 1.0 BPHYT_RS33875 tryptophan synthase subunit alpha 0.78 20
Paraburkholderia graminis OAS925 0.99 ABIE53_003536 glyceraldehyde 3-phosphate dehydrogenase 0.97 ABIE53_004809 tryptophan synthase beta chain
Paraburkholderia bryophila 376MFSha3.1 0.99 H281DRAFT_06315 glyceraldehyde-3-phosphate dehydrogenase (NAD+) 0.97 H281DRAFT_06067 tryptophan synthase, beta chain 0.37 49
Paraburkholderia sabiae LMG 24235 0.96 QEN71_RS27005 type I glyceraldehyde-3-phosphate dehydrogenase 0.96 QEN71_RS17645 tryptophan synthase subunit beta 0.53 31
Herbaspirillum seropedicae SmR1 0.89 HSERO_RS07125 glyceraldehyde-3-phosphate dehydrogenase 0.79 HSERO_RS16475 tryptophan synthase subunit alpha
Castellaniella sp019104865 MT123 0.87 ABCV34_RS15455 type I glyceraldehyde-3-phosphate dehydrogenase 0.81 ABCV34_RS08435 tryptophan synthase subunit beta
Dyella japonica UNC79MFTsu3.2 0.76 ABZR86_RS18615 type I glyceraldehyde-3-phosphate dehydrogenase 0.72 ABZR86_RS08000 tryptophan synthase subunit beta 0.71 68
Shewanella sp. ANA-3 0.72 Shewana3_2124 glyceraldehyde-3-phosphate dehydrogenase (RefSeq) 0.53 Shewana3_1516 tryptophan synthase subunit beta (RefSeq)
Shewanella loihica PV-4 0.71 Shew_2002 glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq) 0.54 Shew_2255 tryptophan synthase subunit beta (RefSeq)
Shewanella amazonensis SB2B 0.71 Sama_1808 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (RefSeq) 0.53 Sama_2133 tryptophan synthase subunit beta (RefSeq)
Shewanella oneidensis MR-1 0.71 SO2345 gapA-2 glyceraldehyde 3-phosphate dehydrogenase (NCBI ptt file) 0.53 SO3023 trpB tryptophan synthase, beta subunit (NCBI ptt file)
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_1108 glyceraldehyde-3-phosphate dehydrogenase 0.66 Psyr_0034 tryptophan synthase, beta chain low > 86
Kangiella aquimarina DSM 16071 0.67 B158DRAFT_0511 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (EC 1.2.1.12) 0.54 B158DRAFT_2429 tryptophan synthase, beta subunit
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_1108 glyceraldehyde-3-phosphate dehydrogenase 0.66 Psyr_0034 tryptophan synthase, beta chain low > 86
Pseudomonas simiae WCS417 0.66 PS417_22695 glyceraldehyde-3-phosphate dehydrogenase 0.68 PS417_00185 tryptophan synthase subunit beta 0.25 33
Pseudomonas fluorescens SBW25-INTG 0.66 PFLU_RS24335 type I glyceraldehyde-3-phosphate dehydrogenase 0.69 PFLU_RS00180 tryptophan synthase subunit beta low > 109
Pseudomonas fluorescens SBW25 0.66 PFLU_RS24335 type I glyceraldehyde-3-phosphate dehydrogenase 0.69 PFLU_RS00180 tryptophan synthase subunit beta low > 109
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_602 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) 0.69 Pf1N1B4_1831 Tryptophan synthase beta chain (EC 4.2.1.20) 0.44 41
Pseudomonas sp. RS175 0.65 PFR28_00560 Glyceraldehyde-3-phosphate dehydrogenase 1 0.68 PFR28_04715 Tryptophan synthase beta chain
Marinobacter adhaerens HP15 0.65 HP15_2175 glyceraldehyde-3-phosphate dehydrogenase, type I 0.67 HP15_1827 tryptophan synthase, beta subunit
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_03425 glyceraldehyde-3-phosphate dehydrogenase 0.68 AO353_10710 tryptophan synthase subunit beta low > 101
Pseudomonas fluorescens GW456-L13 0.65 PfGW456L13_1888 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) 0.68 PfGW456L13_566 Tryptophan synthase beta chain (EC 4.2.1.20) 0.38 85
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_05225 glyceraldehyde-3-phosphate dehydrogenase 0.68 AO356_10915 tryptophan synthase subunit beta 0.35 56
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_2899 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) 0.68 Pf6N2E2_4048 Tryptophan synthase beta chain (EC 4.2.1.20) 0.32 91
Sinorhizobium meliloti 1021 0.62 SMc03979 glyceraldehyde-3-phosphate dehydrogenase 0.64 SMc02766 tryptophan synthase subunit beta 0.63 84
Pseudomonas putida KT2440 0.62 PP_1009 glyceraldehyde-3-phosphate dehydrogenase 0.66 PP_0083 tryptophan synthase beta chain low > 96
Rhodopseudomonas palustris CGA009 0.61 TX73_004865 type I glyceraldehyde-3-phosphate dehydrogenase 0.67 TX73_000360 tryptophan synthase subunit beta
Agrobacterium fabrum C58 0.61 Atu3737 glyceraldehyde 3-phosphate dehydrogenase 0.64 Atu0018 tryptophan synthase beta subunit
Rhodospirillum rubrum S1H 0.61 Rru_A0222 Glyceraldehyde-3-phosphate dehydrogenase, type I (NCBI) 0.66 Rru_A3427 Tryptophan synthase, beta chain (NCBI)
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_0730 glyceraldehyde-3-phosphate dehydrogenase, type I 0.67 Ga0059261_0238 tryptophan synthase, beta subunit
Rhizobium sp. OAE497 0.60 ABIE40_RS15870 type I glyceraldehyde-3-phosphate dehydrogenase 0.64 ABIE40_RS19335 tryptophan synthase subunit beta
Azospirillum brasilense Sp245 0.59 AZOBR_RS10375 glyceraldehyde-3-phosphate dehydrogenase 0.68 AZOBR_RS00525 tryptophan synthase subunit beta low > 97
Azospirillum sp. SherDot2 0.59 MPMX19_02850 Glyceraldehyde-3-phosphate dehydrogenase 1 0.67 MPMX19_02736 Tryptophan synthase beta chain low > 112
Dinoroseobacter shibae DFL-12 0.59 Dshi_1742 glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq) 0.65 Dshi_1031 tryptophan synthase, beta subunit (RefSeq)
Dechlorosoma suillum PS 0.58 Dsui_1560 glyceraldehyde-3-phosphate dehydrogenase, type I 0.85 Dsui_3192 tryptophan synthase, beta subunit
Bosea sp. OAE506 0.58 ABIE41_RS09420 type I glyceraldehyde-3-phosphate dehydrogenase 0.67 ABIE41_RS04270 tryptophan synthase subunit beta
Brevundimonas sp. GW460-12-10-14-LB2 0.57 A4249_RS10040 type I glyceraldehyde-3-phosphate dehydrogenase 0.62 A4249_RS11330 tryptophan synthase subunit beta
Phaeobacter inhibens DSM 17395 0.56 PGA1_c27490 glyceraldehyde-3-phosphate dehydrogenase Gap 0.66 PGA1_c04870 tryptophan synthase beta chain
Caulobacter crescentus NA1000 Δfur 0.56 CCNA_03358 glyceraldehyde 3-phosphate dehydrogenase 0.61 CCNA_03658 tryptophan synthase beta chain low > 67
Caulobacter crescentus NA1000 0.56 CCNA_03358 glyceraldehyde 3-phosphate dehydrogenase 0.61 CCNA_03658 tryptophan synthase beta chain
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF3022 D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) 0.53 GFF2725 Tryptophan synthase beta chain (EC 4.2.1.20) low > 78
Escherichia coli ECRC101 0.55 MCAODC_09905 epd erythrose-4-phosphate dehydrogenase 0.53 MCAODC_15595 trpB tryptophan synthase subunit beta low > 87
Escherichia coli ECRC100 0.55 OKFHMN_19385 epd erythrose-4-phosphate dehydrogenase 0.53 OKFHMN_02670 trpB tryptophan synthase subunit beta 0.63 50
Escherichia coli Nissle 1917 0.55 ECOLIN_RS16265 erythrose-4-phosphate dehydrogenase 0.53 ECOLIN_RS07600 tryptophan synthase subunit beta low > 55
Escherichia coli ECOR27 0.55 NOLOHH_11295 epd erythrose-4-phosphate dehydrogenase 0.53 NOLOHH_20330 trpB tryptophan synthase subunit beta low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_00789 D-erythrose-4-phosphate dehydrogenase 0.53 OHPLBJKB_02422 Tryptophan synthase beta chain low > 73
Escherichia coli BW25113 0.55 b2927 epd D-erythrose 4-phosphate dehydrogenase (NCBI) 0.53 b1261 trpB tryptophan synthase subunit beta (NCBI) 0.27 71
Escherichia coli ECRC102 0.55 NIAGMN_17150 epd erythrose-4-phosphate dehydrogenase 0.53 NIAGMN_26840 trpB tryptophan synthase subunit beta
Escherichia coli BL21 0.55 ECD_02758 D-erythrose 4-phosphate dehydrogenase 0.53 ECD_01235 tryptophan synthase, beta subunit low > 61
Escherichia coli ECRC62 0.55 BNILDI_09835 epd erythrose-4-phosphate dehydrogenase 0.53 BNILDI_18475 trpB tryptophan synthase subunit beta low > 75
Escherichia coli ECRC98 0.55 JDDGAC_23015 epd erythrose-4-phosphate dehydrogenase 0.53 JDDGAC_05215 trpB tryptophan synthase subunit beta low > 86
Escherichia coli ECRC99 0.55 KEDOAH_08755 epd erythrose-4-phosphate dehydrogenase 0.53 KEDOAH_26080 trpB tryptophan synthase subunit beta
Pantoea sp. MT58 0.55 IAI47_03685 erythrose-4-phosphate dehydrogenase 0.53 IAI47_09170 tryptophan synthase subunit beta 0.43 76
Escherichia fergusonii Becca 0.54 EFB2_00979 D-erythrose-4-phosphate dehydrogenase 0.53 EFB2_02665 Tryptophan synthase beta chain low > 86
Escherichia coli ECOR38 0.54 HEPCGN_18695 epd erythrose-4-phosphate dehydrogenase 0.53 HEPCGN_25520 trpB tryptophan synthase subunit beta low > 87
Klebsiella michiganensis M5al 0.54 BWI76_RS23985 erythrose-4-phosphate dehydrogenase 0.54 BWI76_RS11845 tryptophan synthase subunit beta low > 92
Enterobacter asburiae PDN3 0.53 EX28DRAFT_2973 erythrose-4-phosphate dehydrogenase 0.54 EX28DRAFT_0933 tryptophan synthase, beta subunit 0.58 18
Pseudomonas stutzeri RCH2 0.53 Psest_3784 glyceraldehyde-3-phosphate dehydrogenase, type I 0.70 Psest_0063 tryptophan synthase, beta subunit low > 67
Enterobacter sp. TBS_079 0.53 MPMX20_03779 D-erythrose-4-phosphate dehydrogenase 0.54 MPMX20_02513 Tryptophan synthase beta chain low > 85
Serratia liquefaciens MT49 0.53 IAI46_21015 erythrose-4-phosphate dehydrogenase 0.53 IAI46_14040 tryptophan synthase subunit beta low > 86
Rahnella sp. WP5 0.52 EX31_RS21405 erythrose-4-phosphate dehydrogenase 0.54 EX31_RS09975 tryptophan synthase subunit beta low > 89
Pectobacterium carotovorum WPP14 0.52 HER17_RS02685 erythrose-4-phosphate dehydrogenase 0.54 HER17_RS10935 tryptophan synthase subunit beta low > 75
Pontibacter actiniarum KMM 6156, DSM 19842 0.52 CA264_03770 type I glyceraldehyde-3-phosphate dehydrogenase 0.55 CA264_05080 tryptophan synthase subunit beta
Erwinia tracheiphila SCR3 0.52 LU632_RS05535 epd erythrose-4-phosphate dehydrogenase 0.54 LU632_RS12770 trpB tryptophan synthase subunit beta low > 74
Mycobacterium tuberculosis H37Rv 0.52 Rv1436 Probable glyceraldehyde 3-phosphate dehydrogenase Gap (GAPDH) 0.62 Rv1612 Tryptophan synthase, beta subunit TrpB
Dickeya dianthicola 67-19 0.51 HGI48_RS18445 erythrose-4-phosphate dehydrogenase 0.53 HGI48_RS10465 tryptophan synthase subunit beta low > 71
Dickeya dianthicola ME23 0.51 DZA65_RS19580 erythrose-4-phosphate dehydrogenase 0.53 DZA65_RS10945 tryptophan synthase subunit beta low > 75
Dickeya dadantii 3937 0.51 DDA3937_RS18520 erythrose-4-phosphate dehydrogenase 0.53 DDA3937_RS10465 tryptophan synthase subunit beta low > 74
Pseudomonas sp. S08-1 0.51 OH686_10765 erythrose-4-phosphate dehydrogenase 0.70 OH686_12425 tryptophan synthase, beta subunit
Alteromonas macleodii MIT1002 0.51 MIT1002_00862 D-erythrose-4-phosphate dehydrogenase 0.53 MIT1002_01426 Tryptophan synthase beta chain
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_02530 D-erythrose-4-phosphate dehydrogenase 0.54 CSW01_05930 tryptophan synthase subunit beta low > 62
Acinetobacter radioresistens SK82 0.50 MPMX26_01087 D-erythrose-4-phosphate dehydrogenase 0.72 MPMX26_02617 Tryptophan synthase beta chain low > 36
Variovorax sp. SCN45 0.49 GFF7175 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) 0.78 GFF3883 Tryptophan synthase beta chain (EC 4.2.1.20)
Ralstonia solanacearum PSI07 0.49 RPSI07_RS11435 type I glyceraldehyde-3-phosphate dehydrogenase 0.88 RPSI07_RS14730 tryptophan synthase subunit beta
Ralstonia solanacearum GMI1000 0.49 RS_RS13755 aldehyde dehydrogenase 0.88 RS_RS09965 tryptophan synthase subunit beta
Desulfovibrio vulgaris Hildenborough JW710 0.49 DVU0565 gap-1 glyceraldehyde 3-phosphate dehydrogenase (TIGR) 0.57 DVU0085 trpB-1 tryptophan synthase, beta subunit (TIGR) low > 55
Ralstonia solanacearum UW163 0.49 UW163_RS07760 type I glyceraldehyde-3-phosphate dehydrogenase 0.88 UW163_RS11140 tryptophan synthase subunit beta
Variovorax sp. OAS795 0.49 ABID97_RS02440 type I glyceraldehyde-3-phosphate dehydrogenase 0.77 ABID97_RS08430 tryptophan synthase subunit beta
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS05865 type I glyceraldehyde-3-phosphate dehydrogenase 0.88 RALBFv3_RS02585 tryptophan synthase subunit beta
Rhodanobacter denitrificans MT42 0.49 LRK55_RS05540 type I glyceraldehyde-3-phosphate dehydrogenase 0.70 LRK55_RS01465 tryptophan synthase subunit beta low > 63
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS01435 type I glyceraldehyde-3-phosphate dehydrogenase 0.88 ABZR87_RS14500 tryptophan synthase subunit beta
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS05785 type I glyceraldehyde-3-phosphate dehydrogenase 0.70 LRK54_RS01685 tryptophan synthase subunit beta 0.80 30
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS17570 glyceraldehyde-3-phosphate dehydrogenase 0.90 RR42_RS14360 tryptophan synthase subunit alpha
Pedobacter sp. GW460-11-11-14-LB5 0.48 CA265_RS01860 type I glyceraldehyde-3-phosphate dehydrogenase 0.56 CA265_RS05020 tryptophan synthase subunit beta
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS12470 type I glyceraldehyde-3-phosphate dehydrogenase 0.57 ABZR88_RS10665 tryptophan synthase subunit beta
Lysobacter sp. OAE881 0.47 ABIE51_RS17095 type I glyceraldehyde-3-phosphate dehydrogenase 0.71 ABIE51_RS08260 tryptophan synthase subunit beta low > 62
Echinicola vietnamensis KMM 6221, DSM 17526 0.47 Echvi_3029 glyceraldehyde-3-phosphate dehydrogenase, type I 0.54 Echvi_2510 tryptophan synthase, beta subunit
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_01060 gap type I glyceraldehyde-3-phosphate dehydrogenase 0.70 OKGIIK_04845 trpB tryptophan synthase subunit beta low > 52
Synechococcus elongatus PCC 7942 0.47 Synpcc7942_1742 gap2 glyceraldehyde-3-phosphate dehydrogenase 0.61 Synpcc7942_2143 trpB tryptophan synthase subunit beta
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.1236.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) 0.71 Xcc-8004.1964.1 Tryptophan synthase beta chain (EC 4.2.1.20) low > 74
Acidovorax sp. GW101-3H11 0.46 Ac3H11_648 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) 0.77 Ac3H11_1534 Tryptophan synthase beta chain (EC 4.2.1.20)
Desulfovibrio vulgaris Miyazaki F 0.46 DvMF_1440 glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq) 0.57 DvMF_2237 tryptophan synthase subunit beta (RefSeq) low > 51
Parabacteroides merdae CL09T00C40 0.45 HMPREF1078_RS15885 type I glyceraldehyde-3-phosphate dehydrogenase 0.52 HMPREF1078_RS00150 tryptophan synthase subunit beta
Bacteroides ovatus ATCC 8483 0.45 BACOVA_05096 glyceraldehyde-3-phosphate dehydrogenase, type I 0.50 BACOVA_03779 tryptophan synthase, beta subunit
Phocaeicola vulgatus CL09T03C04 0.45 HMPREF1058_RS06050 type I glyceraldehyde-3-phosphate dehydrogenase 0.51 HMPREF1058_RS07170 tryptophan synthase subunit beta
Phocaeicola dorei CL03T12C01 0.45 ABI39_RS17975 type I glyceraldehyde-3-phosphate dehydrogenase 0.51 ABI39_RS21045 tryptophan synthase subunit beta
Bacteroides stercoris CC31F 0.45 HMPREF1181_RS06145 type I glyceraldehyde-3-phosphate dehydrogenase 0.53 HMPREF1181_RS15320 tryptophan synthase subunit beta
Bacteroides thetaiotaomicron VPI-5482 0.45 BT4263 glyceraldehyde 3-phosphate dehydrogenase (NCBI ptt file) 0.51 BT0533 tryptophan synthase beta chain (NCBI ptt file)
Magnetospirillum magneticum AMB-1 0.44 AMB_RS02635 type I glyceraldehyde-3-phosphate dehydrogenase 0.67 AMB_RS20295 tryptophan synthase subunit beta
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF1114 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) 0.79 GFF3355 Tryptophan synthase beta chain (EC 4.2.1.20) low > 90

Not shown: 2 genomes with orthologs for BPHYT_RS16835 only; 2 genomes with orthologs for BPHYT_RS33875 only