Conservation of cofitness between BPHYT_RS17380 and BPHYT_RS15920 in Burkholderia phytofirmans PsJN

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS17380 ribulose-phosphate 3-epimerase 1.0 BPHYT_RS15920 argininosuccinate synthase 0.73 8
Paraburkholderia bryophila 376MFSha3.1 0.97 H281DRAFT_05717 ribulose-5-phosphate 3-epimerase 0.99 H281DRAFT_04120 argininosuccinate synthase 0.47 18
Paraburkholderia graminis OAS925 0.96 ABIE53_003638 ribulose-phosphate 3-epimerase 1.00 ABIE53_003355 argininosuccinate synthase — —
Paraburkholderia sabiae LMG 24235 0.91 QEN71_RS27540 ribulose-phosphate 3-epimerase 0.16 QEN71_RS09235 argininosuccinate synthase — —
Cupriavidus basilensis FW507-4G11 0.80 RR42_RS18285 ribulose-phosphate 3-epimerase 0.91 RR42_RS17170 argininosuccinate synthase — —
Ralstonia solanacearum UW163 0.77 UW163_RS07150 ribulose-phosphate 3-epimerase 0.15 UW163_RS08445 argininosuccinate synthase — —
Ralstonia solanacearum IBSBF1503 0.77 RALBFv3_RS06475 ribulose-phosphate 3-epimerase 0.15 RALBFv3_RS05180 argininosuccinate synthase — —
Herbaspirillum seropedicae SmR1 0.77 HSERO_RS19425 ribulose-phosphate 3-epimerase 0.16 HSERO_RS07180 argininosuccinate synthase — —
Ralstonia sp. UNC404CL21Col 0.77 ABZR87_RS02130 ribulose-phosphate 3-epimerase 0.15 ABZR87_RS00835 argininosuccinate synthase — —
Ralstonia solanacearum GMI1000 0.77 RS_RS14420 ribulose-phosphate 3-epimerase 0.15 RS_RS12800 argininosuccinate synthase — —
Ralstonia solanacearum PSI07 0.77 RPSI07_RS10765 ribulose-phosphate 3-epimerase 0.15 RPSI07_RS12120 argininosuccinate synthase — —
Dechlorosoma suillum PS 0.75 Dsui_0221 ribulose-phosphate 3-epimerase 0.84 Dsui_3248 argininosuccinate synthase — —
Serratia liquefaciens MT49 0.74 IAI46_23685 ribulose-phosphate 3-epimerase 0.48 IAI46_24505 argininosuccinate synthase 0.65 9
Escherichia coli BW25113 0.73 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) 0.14 b3172 argG argininosuccinate synthase (NCBI) low > 76
Escherichia coli Nissle 1917 0.73 ECOLIN_RS19345 ribulose-phosphate 3-epimerase 0.14 ECOLIN_RS18275 argininosuccinate synthase low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase 0.14 OHPLBJKB_00528 Argininosuccinate synthase — —
Escherichia coli ECRC101 0.73 MCAODC_07660 dam adenine-specific DNA-methyltransferase 0.14 MCAODC_08610 argG argininosuccinate synthase — —
Escherichia coli ECOR27 0.73 NOLOHH_08920 dam adenine-specific DNA-methyltransferase 0.14 NOLOHH_09890 argG argininosuccinate synthase — —
Escherichia fergusonii Becca 0.73 EFB2_00442 Ribulose-phosphate 3-epimerase 0.14 EFB2_00651 Argininosuccinate synthase — —
Escherichia coli ECRC102 0.73 NIAGMN_14900 dam adenine-specific DNA-methyltransferase 0.14 NIAGMN_15850 argG argininosuccinate synthase — —
Escherichia coli ECRC98 0.73 JDDGAC_20760 dam adenine-specific DNA-methyltransferase 0.14 JDDGAC_21715 argG argininosuccinate synthase — —
Escherichia coli BL21 0.73 ECD_03238 D-ribulose-5-phosphate 3-epimerase 0.14 ECD_03038 argininosuccinate synthetase low > 61
Escherichia coli ECRC62 0.73 BNILDI_02600 dam adenine-specific DNA-methyltransferase 0.14 BNILDI_01645 argG argininosuccinate synthase — —
Escherichia coli ECRC99 0.73 KEDOAH_11010 dam adenine-specific DNA-methyltransferase 0.14 KEDOAH_10060 argG argininosuccinate synthase — —
Escherichia coli ECOR38 0.73 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase 0.14 HEPCGN_16965 argG argininosuccinate synthase 0.57 47
Escherichia coli ECRC100 0.73 OKFHMN_17130 dam adenine-specific DNA-methyltransferase 0.14 OKFHMN_18090 argG argininosuccinate synthase — —
Shewanella amazonensis SB2B 0.71 Sama_3362 ribulose-phosphate 3-epimerase (RefSeq) 0.45 Sama_0259 argininosuccinate synthase (RefSeq) — —
Shewanella oneidensis MR-1 0.71 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) 0.46 SO0278 argG argininosuccinate synthase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.71 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) 0.46 Shewana3_3902 argininosuccinate synthase (RefSeq) — —
Erwinia tracheiphila SCR3 0.71 LU632_RS22850 rpe ribulose-phosphate 3-epimerase 0.47 LU632_RS19605 argininosuccinate synthase — —
Pantoea sp. MT58 0.70 IAI47_01910 ribulose-phosphate 3-epimerase 0.47 IAI47_00915 argininosuccinate synthase — —
Shewanella loihica PV-4 0.70 Shew_0219 ribulose-phosphate 3-epimerase (RefSeq) 0.45 Shew_0205 argininosuccinate synthase (RefSeq) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_4611 ribulose-5-phosphate 3-epimerase 0.74 Psyr_3892 argininosuccinate synthase — —
Rahnella sp. WP5 0.70 EX31_RS04705 ribulose-phosphate 3-epimerase 0.15 EX31_RS13445 argininosuccinate synthase — —
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_13285 ribulose-phosphate 3-epimerase 0.47 CSW01_13370 argininosuccinate synthase low > 62
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_4611 ribulose-5-phosphate 3-epimerase 0.74 Psyr_3892 argininosuccinate synthase — —
Pseudomonas stutzeri RCH2 0.69 Psest_3652 ribulose-phosphate 3-epimerase 0.76 Psest_3121 argininosuccinate synthase — —
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS12200 ribulose-phosphate 3-epimerase 0.20 ABZR86_RS08715 arginosuccinate synthetase (EC 6.3.4.5) (from data) 0.63 45
Pseudomonas sp. RS175 0.69 PFR28_04049 Ribulose-phosphate 3-epimerase 0.75 PFR28_03353 Argininosuccinate synthase — —
Pseudomonas fluorescens SBW25 0.69 PFLU_RS27390 ribulose-phosphate 3-epimerase 0.74 PFLU_RS05725 argininosuccinate synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.69 GFF2197 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.14 GFF294 Argininosuccinate synthase (EC 6.3.4.5) — —
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS27390 ribulose-phosphate 3-epimerase 0.74 PFLU_RS05725 argininosuccinate synthase — —
Pseudomonas simiae WCS417 0.69 PS417_25735 ribulose-phosphate 3-epimerase 0.75 PS417_05640 argininosuccinate synthase — —
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.75 Pf1N1B4_742 Argininosuccinate synthase (EC 6.3.4.5) — —
Pseudomonas putida KT2440 0.69 PP_0415 ribulose-5-phosphate 3-epimerase 0.76 PP_1088 Argininosuccinate synthase — —
Lysobacter sp. OAE881 0.69 ABIE51_RS04135 ribulose-phosphate 3-epimerase 0.19 ABIE51_RS13405 argininosuccinate synthase — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_0267 ribulose-phosphate 3-epimerase 0.22 B158DRAFT_1976 argininosuccinate synthase (EC 6.3.4.5) — —
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_14410 ribulose phosphate epimerase 0.75 AO356_18325 argininosuccinate synthase — —
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.74 PfGW456L13_1749 Argininosuccinate synthase (EC 6.3.4.5) — —
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.75 Pf6N2E2_5590 Argininosuccinate synthase (EC 6.3.4.5) — —
Pseudomonas sp. S08-1 0.68 OH686_15115 ribulose-phosphate 3-epimerase 0.74 OH686_03930 argininosuccinate synthase — —
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_07240 ribulose phosphate epimerase 0.74 AO353_04105 argininosuccinate synthase — —
Marinobacter adhaerens HP15 0.66 HP15_3286 ribulose-phosphate 3-epimerase-like protein 0.74 HP15_2367 argininosuccinate synthase — —
Azospirillum sp. SherDot2 0.65 MPMX19_02946 Ribulose-phosphate 3-epimerase 0.70 MPMX19_02369 Argininosuccinate synthase — —
Variovorax sp. OAS795 0.65 ABID97_RS04905 ribulose-phosphate 3-epimerase 0.15 ABID97_RS21670 argininosuccinate synthase — —
Variovorax sp. SCN45 0.65 GFF6246 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.15 GFF3096 Argininosuccinate synthase (EC 6.3.4.5) — —
Alteromonas macleodii MIT1002 0.65 MIT1002_00441 Ribulose-phosphate 3-epimerase 0.46 MIT1002_00468 Argininosuccinate synthase — —
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.605.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.20 Xcc-8004.2318.1 Argininosuccinate synthase (EC 6.3.4.5) — —
Rhodanobacter denitrificans MT42 0.64 LRK55_RS11120 ribulose-phosphate 3-epimerase 0.19 LRK55_RS02155 argininosuccinate synthase — —
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS11390 ribulose-phosphate 3-epimerase 0.19 LRK54_RS02400 argininosuccinate synthase — —
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_12435 rpe ribulose-phosphate 3-epimerase 0.19 OKGIIK_09465 argG argininosuccinate synthase — —
Acidovorax sp. GW101-3H11 0.62 Ac3H11_757 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.14 Ac3H11_2616 Argininosuccinate synthase (EC 6.3.4.5) — —
Rhodospirillum rubrum S1H 0.57 Rru_A2402 Ribulose-phosphate 3-epimerase (NCBI) 0.68 Rru_A3751 Argininosuccinate synthase (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.52 Ga0059261_2240 ribulose-phosphate 3-epimerase 0.64 Ga0059261_1393 argininosuccinate synthase (EC 6.3.4.5) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS13160 ribulose-phosphate 3-epimerase 0.67 A4249_RS14275 argininosuccinate synthase — —
Synechococcus elongatus PCC 7942 0.51 Synpcc7942_0604 rpe ribulose-phosphate 3-epimerase 0.41 Synpcc7942_0009 argG argininosuccinate synthase — —
Magnetospirillum magneticum AMB-1 0.50 AMB_RS06980 ribulose-phosphate 3-epimerase 0.68 AMB_RS05720 argininosuccinate synthase — —
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_00100 Ribulose-5-phosphate 3-epimerase 0.67 CCNA_00128 argininosuccinate synthase — —
Caulobacter crescentus NA1000 0.50 CCNA_00100 Ribulose-5-phosphate 3-epimerase 0.67 CCNA_00128 argininosuccinate synthase — —
Rhizobium sp. OAE497 0.46 ABIE40_RS10105 ribulose-phosphate 3-epimerase 0.64 ABIE40_RS18150 argininosuccinate synthase — —
Sinorhizobium meliloti 1021 0.46 SMc00511 D-ribulose-5-phosphate 3-epimerase 0.64 SMc03826 argininosuccinate synthase low > 103
Agrobacterium fabrum C58 0.46 Atu1839 ribulose-phosphate 3-epimerase 0.64 Atu2667 argininosuccinate synthase — —
Azospirillum brasilense Sp245 0.45 AZOBR_RS06755 ribulose-phosphate 3-epimerase 0.70 AZOBR_RS00785 argininosuccinate synthase — —
Dinoroseobacter shibae DFL-12 0.45 Dshi_3006 Ribulose-phosphate 3-epimerase (RefSeq) 0.65 Dshi_3472 Argininosuccinate synthase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.44 DVU2531 rpe ribulose-phosphate 3-epimerase (TIGR) 0.59 DVU1095 argG argininosuccinate synthase (TIGR) — —
Rhodopseudomonas palustris CGA009 0.44 TX73_019755 ribulose-phosphate 3-epimerase 0.14 TX73_002040 argininosuccinate synthase — —
Phaeobacter inhibens DSM 17395 0.44 PGA1_c04170 ribulose-phosphate 3-epimerase Rpe 0.67 PGA1_c34920 argininosuccinate synthase ArgG — —
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS08990 ribulose-phosphate 3-epimerase 0.18 CA265_RS18545 argininosuccinate synthase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.40 CA264_21180 ribulose-phosphate 3-epimerase 0.18 CA264_06255 argininosuccinate synthase low > 74
Mycobacterium tuberculosis H37Rv 0.39 Rv1408 Probable ribulose-phosphate 3-epimerase Rpe (PPE) (R5P3E) (pentose-5-phosphate 3-epimerase) 0.34 Rv1658 Probable argininosuccinate synthase ArgG — —
Desulfovibrio vulgaris Miyazaki F 0.39 DvMF_0977 Ribulose-phosphate 3-epimerase (RefSeq) 0.57 DvMF_0047 argininosuccinate synthase (RefSeq) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.38 ABZR88_RS06500 ribulose-phosphate 3-epimerase 0.19 ABZR88_RS15515 argininosuccinate synthase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.37 Echvi_3575 ribulose-phosphate 3-epimerase 0.19 Echvi_3846 argininosuccinate synthase 0.86 20
Bacteroides thetaiotaomicron VPI-5482 0.37 BT3946 ribulose-phosphate 3-epimerase (NCBI ptt file) 0.17 BT3760 arginosuccinate synthetase (EC 6.3.4.5) (from data) — —
Bacteroides ovatus ATCC 8483 0.37 BACOVA_01203 ribulose-phosphate 3-epimerase 0.17 BACOVA_03590 putative argininosuccinate synthase — —
Parabacteroides merdae CL09T00C40 0.37 HMPREF1078_RS00800 ribulose-phosphate 3-epimerase 0.18 HMPREF1078_RS10575 argininosuccinate synthase — —
Bifidobacterium breve UCC2003 0.36 BBR_RS15800 ribulose-phosphate 3-epimerase 0.35 BBR_RS13915 argininosuccinate synthase — —
Bacteroides stercoris CC31F 0.36 HMPREF1181_RS06505 ribulose-phosphate 3-epimerase 0.17 HMPREF1181_RS03460 argininosuccinate synthase low > 56
Phocaeicola vulgatus CL09T03C04 0.36 HMPREF1058_RS07710 ribulose-phosphate 3-epimerase 0.17 HMPREF1058_RS08845 argininosuccinate synthase — —
Phocaeicola dorei CL03T12C01 0.35 ABI39_RS00225 ribulose-phosphate 3-epimerase 0.17 ABI39_RS02975 argininosuccinate synthase — —
Methanococcus maripaludis JJ 0.35 MMJJ_RS08595 ribulose-phosphate 3-epimerase 0.37 MMJJ_RS05060 argininosuccinate synthase — —
Methanococcus maripaludis S2 0.35 MMP_RS05755 ribulose-phosphate 3-epimerase 0.39 MMP_RS00425 argininosuccinate synthase — —

Not shown: 11 genomes with orthologs for BPHYT_RS17380 only; 1 genomes with orthologs for BPHYT_RS15920 only