Conservation of cofitness between BPHYT_RS17380 and BPHYT_RS06545 in Burkholderia phytofirmans PsJN

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS17380 ribulose-phosphate 3-epimerase 1.0 BPHYT_RS06545 acetolactate synthase 0.73 5
Paraburkholderia bryophila 376MFSha3.1 0.97 H281DRAFT_05717 ribulose-5-phosphate 3-epimerase 0.99 H281DRAFT_04551 acetolactate synthase, large subunit
Paraburkholderia graminis OAS925 0.96 ABIE53_003638 ribulose-phosphate 3-epimerase 0.99 ABIE53_001574 acetolactate synthase-1/2/3 large subunit
Paraburkholderia sabiae LMG 24235 0.91 QEN71_RS27540 ribulose-phosphate 3-epimerase 0.97 QEN71_RS24225 acetolactate synthase 3 catalytic subunit
Cupriavidus basilensis FW507-4G11 0.80 RR42_RS18285 ribulose-phosphate 3-epimerase 0.80 RR42_RS05435 acetolactate synthase 3 catalytic subunit
Ralstonia solanacearum UW163 0.77 UW163_RS07150 ribulose-phosphate 3-epimerase 0.82 UW163_RS10675 acetolactate synthase 3 large subunit
Ralstonia solanacearum IBSBF1503 0.77 RALBFv3_RS06475 ribulose-phosphate 3-epimerase 0.82 RALBFv3_RS03050 acetolactate synthase 3 large subunit
Herbaspirillum seropedicae SmR1 0.77 HSERO_RS19425 ribulose-phosphate 3-epimerase 0.74 HSERO_RS08650 acetolactate synthase
Ralstonia sp. UNC404CL21Col 0.77 ABZR87_RS02130 ribulose-phosphate 3-epimerase 0.81 ABZR87_RS14955 acetolactate synthase 3 catalytic subunit
Ralstonia solanacearum PSI07 0.77 RPSI07_RS10765 ribulose-phosphate 3-epimerase 0.82 RPSI07_RS14255 acetolactate synthase, large subunit, biosynthetic type
Ralstonia solanacearum GMI1000 0.77 RS_RS14420 ribulose-phosphate 3-epimerase 0.81 RS_RS10420 acetolactate synthase 3 large subunit
Dechlorosoma suillum PS 0.75 Dsui_0221 ribulose-phosphate 3-epimerase 0.68 Dsui_3529 acetolactate synthase, large subunit, biosynthetic type
Klebsiella michiganensis M5al 0.74 BWI76_RS26070 ribulose-phosphate 3-epimerase 0.55 BWI76_RS04695 acetolactate synthase 3 large subunit
Serratia liquefaciens MT49 0.74 IAI46_23685 ribulose-phosphate 3-epimerase 0.56 IAI46_03375 acetolactate synthase 3 large subunit low > 86
Dickeya dianthicola ME23 0.73 DZA65_RS20745 ribulose-phosphate 3-epimerase 0.56 DZA65_RS19185 acetolactate synthase 3 large subunit
Dickeya dianthicola 67-19 0.73 HGI48_RS19660 ribulose-phosphate 3-epimerase 0.56 HGI48_RS18040 acetolactate synthase 3 large subunit
Escherichia coli ECRC100 0.73 OKFHMN_17130 dam adenine-specific DNA-methyltransferase 0.55 OKFHMN_10700 ilvI acetolactate synthase 3 large subunit
Dickeya dadantii 3937 0.73 DDA3937_RS19530 ribulose-phosphate 3-epimerase 0.56 DDA3937_RS18105 acetolactate synthase 3 large subunit
Escherichia coli BL21 0.73 ECD_03238 D-ribulose-5-phosphate 3-epimerase 0.55 ECD_00079 acetolactate synthase 3 large subunit low > 61
Escherichia coli Nissle 1917 0.73 ECOLIN_RS19345 ribulose-phosphate 3-epimerase 0.55 ECOLIN_RS00415 acetolactate synthase 3 large subunit low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase 0.55 OHPLBJKB_03581 Acetolactate synthase isozyme 3 large subunit
Escherichia coli ECRC99 0.73 KEDOAH_11010 dam adenine-specific DNA-methyltransferase 0.55 KEDOAH_17455 ilvI acetolactate synthase 3 large subunit
Escherichia coli ECOR38 0.73 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase 0.55 HEPCGN_08680 ilvI acetolactate synthase 3 large subunit low > 87
Escherichia coli ECRC102 0.73 NIAGMN_14900 dam adenine-specific DNA-methyltransferase 0.55 NIAGMN_08550 ilvI acetolactate synthase 3 large subunit
Escherichia fergusonii Becca 0.73 EFB2_00442 Ribulose-phosphate 3-epimerase 0.55 EFB2_03969 Acetolactate synthase isozyme 3 large subunit
Escherichia coli ECRC101 0.73 MCAODC_07660 dam adenine-specific DNA-methyltransferase 0.55 MCAODC_01215 ilvI acetolactate synthase 3 large subunit
Escherichia coli ECRC62 0.73 BNILDI_02600 dam adenine-specific DNA-methyltransferase 0.55 BNILDI_08565 ilvI acetolactate synthase 3 large subunit
Enterobacter asburiae PDN3 0.73 EX28DRAFT_4156 ribulose-phosphate 3-epimerase 0.55 EX28DRAFT_3673 acetolactate synthase, large subunit (EC 2.2.1.6) low > 76
Escherichia coli ECOR27 0.73 NOLOHH_08920 dam adenine-specific DNA-methyltransferase 0.55 NOLOHH_03045 ilvI acetolactate synthase 3 large subunit
Escherichia coli ECRC98 0.73 JDDGAC_20760 dam adenine-specific DNA-methyltransferase 0.55 JDDGAC_14295 ilvI acetolactate synthase 3 large subunit
Escherichia coli BW25113 0.73 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) 0.55 b0077 ilvI acetolactate synthase III large subunit (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.54 GFF161 Acetolactate synthase large subunit (EC 2.2.1.6) low > 78
Enterobacter sp. TBS_079 0.72 MPMX20_04275 Ribulose-phosphate 3-epimerase 0.55 MPMX20_00771 Acetolactate synthase isozyme 3 large subunit low > 85
Shewanella amazonensis SB2B 0.71 Sama_3362 ribulose-phosphate 3-epimerase (RefSeq) 0.56 Sama_2018 acetolactate synthase 3 catalytic subunit (RefSeq)
Shewanella oneidensis MR-1 0.71 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) 0.57 SO2279 ilvI acetolactate synthase III, large subunit (NCBI ptt file)
Shewanella sp. ANA-3 0.71 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) 0.57 Shewana3_2269 acetolactate synthase 3 catalytic subunit (RefSeq)
Erwinia tracheiphila SCR3 0.71 LU632_RS22850 rpe ribulose-phosphate 3-epimerase 0.57 LU632_RS02885 ilvI acetolactate synthase 3 large subunit
Pectobacterium carotovorum WPP14 0.71 HER17_RS01795 ribulose-phosphate 3-epimerase 0.56 HER17_RS03095 acetolactate synthase 3 large subunit low > 75
Shewanella loihica PV-4 0.70 Shew_0219 ribulose-phosphate 3-epimerase (RefSeq) 0.56 Shew_1776 acetolactate synthase 3 catalytic subunit (RefSeq)
Pantoea sp. MT58 0.70 IAI47_01910 ribulose-phosphate 3-epimerase 0.55 IAI47_15990 acetolactate synthase 3 large subunit
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_4611 ribulose-5-phosphate 3-epimerase 0.58 Psyr_0846 acetolactate synthase, large subunit
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_4611 ribulose-5-phosphate 3-epimerase 0.58 Psyr_0846 acetolactate synthase, large subunit
Rahnella sp. WP5 0.70 EX31_RS04705 ribulose-phosphate 3-epimerase 0.55 EX31_RS03665 acetolactate synthase 3 large subunit
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_13285 ribulose-phosphate 3-epimerase 0.56 CSW01_12565 acetolactate synthase 3 large subunit low > 62
Pseudomonas stutzeri RCH2 0.69 Psest_3652 ribulose-phosphate 3-epimerase 0.58 Psest_1036 acetolactate synthase, large subunit, biosynthetic type
Pseudomonas sp. RS175 0.69 PFR28_04049 Ribulose-phosphate 3-epimerase 0.57 PFR28_03699 Acetolactate synthase isozyme 3 large subunit
Hydrogenophaga sp. GW460-11-11-14-LB1 0.69 GFF2197 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.74 GFF4276 Acetolactate synthase large subunit (EC 2.2.1.6)
Pseudomonas fluorescens SBW25 0.69 PFLU_RS27390 ribulose-phosphate 3-epimerase 0.57 PFLU_RS25650 acetolactate synthase 3 large subunit
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS27390 ribulose-phosphate 3-epimerase 0.57 PFLU_RS25650 acetolactate synthase 3 large subunit
Pseudomonas simiae WCS417 0.69 PS417_25735 ribulose-phosphate 3-epimerase 0.57 PS417_23810 acetolactate synthase 3 catalytic subunit
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.57 Pf1N1B4_2878 Acetolactate synthase large subunit (EC 2.2.1.6)
Lysobacter sp. OAE881 0.69 ABIE51_RS04135 ribulose-phosphate 3-epimerase 0.39 ABIE51_RS17550 acetolactate synthase 2 catalytic subunit
Pseudomonas putida KT2440 0.69 PP_0415 ribulose-5-phosphate 3-epimerase 0.57 PP_4680 acetohydroxybutanoate synthase / acetolactate synthase
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_14410 ribulose phosphate epimerase 0.56 AO356_16170 acetolactate synthase 3 catalytic subunit
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.56 Pf6N2E2_5175 Acetolactate synthase large subunit (EC 2.2.1.6)
Castellaniella sp019104865 MT123 0.68 ABCV34_RS10270 ribulose-phosphate 3-epimerase 0.70 ABCV34_RS01210 acetolactate synthase 3 catalytic subunit
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.56 PfGW456L13_1538 Acetolactate synthase large subunit (EC 2.2.1.6)
Pseudomonas sp. S08-1 0.68 OH686_15115 ribulose-phosphate 3-epimerase 0.58 OH686_08130 acetolactate synthase, large subunit, biosynthetic type
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_07240 ribulose phosphate epimerase 0.57 AO353_14495 acetolactate synthase 3 catalytic subunit
Marinobacter adhaerens HP15 0.66 HP15_3286 ribulose-phosphate 3-epimerase-like protein 0.59 HP15_531 acetolactate synthase, large subunit, biosynthetic type
Azospirillum sp. SherDot2 0.65 MPMX19_02946 Ribulose-phosphate 3-epimerase 0.54 MPMX19_01776 Acetolactate synthase isozyme 3 large subunit
Variovorax sp. OAS795 0.65 ABID97_RS04905 ribulose-phosphate 3-epimerase 0.72 ABID97_RS14885 acetolactate synthase 3 catalytic subunit
Alteromonas macleodii MIT1002 0.65 MIT1002_00441 Ribulose-phosphate 3-epimerase 0.54 MIT1002_00503 Acetolactate synthase isozyme 3 large subunit
Variovorax sp. SCN45 0.65 GFF6246 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.73 GFF1158 Acetolactate synthase large subunit (EC 2.2.1.6)
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.605.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.35 Xcc-8004.1059.1 Acetolactate synthase large subunit (EC 2.2.1.6)
Acinetobacter radioresistens SK82 0.64 MPMX26_02569 Ribulose-phosphate 3-epimerase 0.56 MPMX26_00472 Acetolactate synthase isozyme 3 large subunit
Acidovorax sp. GW101-3H11 0.62 Ac3H11_757 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.72 Ac3H11_525 Acetolactate synthase large subunit (EC 2.2.1.6)
Rhodospirillum rubrum S1H 0.57 Rru_A2402 Ribulose-phosphate 3-epimerase (NCBI) 0.53 Rru_A0467 Acetolactate synthase, large subunit, biosynthetic type (NCBI)
Sphingomonas koreensis DSMZ 15582 0.52 Ga0059261_2240 ribulose-phosphate 3-epimerase 0.48 Ga0059261_0068 acetolactate synthase, large subunit (EC 2.2.1.6)
Synechococcus elongatus PCC 7942 0.51 Synpcc7942_0604 rpe ribulose-phosphate 3-epimerase 0.47 Synpcc7942_0139 ilvB acetolactate synthase 3 catalytic subunit
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS13160 ribulose-phosphate 3-epimerase 0.36 A4249_RS10020 acetolactate synthase 2 catalytic subunit
Caulobacter crescentus NA1000 0.50 CCNA_00100 Ribulose-5-phosphate 3-epimerase 0.55 CCNA_02185 acetolactate synthase large subunit
Magnetospirillum magneticum AMB-1 0.50 AMB_RS06980 ribulose-phosphate 3-epimerase 0.54 AMB_RS17740 acetolactate synthase 3 large subunit
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_00100 Ribulose-5-phosphate 3-epimerase 0.55 CCNA_02185 acetolactate synthase large subunit
Rhizobium sp. OAE497 0.46 ABIE40_RS10105 ribulose-phosphate 3-epimerase 0.54 ABIE40_RS11495 acetolactate synthase 3 large subunit
Sinorhizobium meliloti 1021 0.46 SMc00511 D-ribulose-5-phosphate 3-epimerase 0.53 SMc01431 acetolactate synthase 3 catalytic subunit low > 103
Agrobacterium fabrum C58 0.46 Atu1839 ribulose-phosphate 3-epimerase 0.52 Atu2036 acetolactate synthase III, large subunit
Azospirillum brasilense Sp245 0.45 AZOBR_RS06755 ribulose-phosphate 3-epimerase 0.55 AZOBR_RS06560 acetolactate synthase
Dinoroseobacter shibae DFL-12 0.45 Dshi_3006 Ribulose-phosphate 3-epimerase (RefSeq) 0.50 Dshi_1779 acetolactate synthase, large subunit, biosynthetic type (RefSeq)
Desulfovibrio vulgaris Hildenborough JW710 0.44 DVU2531 rpe ribulose-phosphate 3-epimerase (TIGR) 0.51 DVU1376 ilvB-2 acetolactate synthase, large subunit, biosynthetic type (TIGR)
Phaeobacter inhibens DSM 17395 0.44 PGA1_c04170 ribulose-phosphate 3-epimerase Rpe 0.49 PGA1_c20210 acetolactate synthase isozyme 3 large subunit
Rhodopseudomonas palustris CGA009 0.44 TX73_019755 ribulose-phosphate 3-epimerase 0.52 TX73_010465 acetolactate synthase 3 large subunit
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS08990 ribulose-phosphate 3-epimerase 0.36 CA265_RS15805 acetolactate synthase, large subunit, biosynthetic type
Pontibacter actiniarum KMM 6156, DSM 19842 0.40 CA264_21180 ribulose-phosphate 3-epimerase 0.36 CA264_06930 acetolactate synthase, large subunit, biosynthetic type low > 74
Mycobacterium tuberculosis H37Rv 0.39 Rv1408 Probable ribulose-phosphate 3-epimerase Rpe (PPE) (R5P3E) (pentose-5-phosphate 3-epimerase) 0.44 Rv3003c Acetolactate synthase (large subunit) IlvB1 (acetohydroxy-acid synthase)
Desulfovibrio vulgaris Miyazaki F 0.39 DvMF_0977 Ribulose-phosphate 3-epimerase (RefSeq) 0.50 DvMF_0153 acetolactate synthase, large subunit, biosynthetic type (RefSeq)
Mucilaginibacter yixingensis YX-36 DSM 26809 0.38 ABZR88_RS06500 ribulose-phosphate 3-epimerase 0.37 ABZR88_RS11580 biosynthetic-type acetolactate synthase large subunit
Echinicola vietnamensis KMM 6221, DSM 17526 0.37 Echvi_3575 ribulose-phosphate 3-epimerase 0.38 Echvi_2056 acetolactate synthase, large subunit, biosynthetic type 0.88 11
Bacteroides thetaiotaomicron VPI-5482 0.37 BT3946 ribulose-phosphate 3-epimerase (NCBI ptt file) 0.37 BT2077 acetolactate synthase large subunit (NCBI ptt file)
Bacteroides ovatus ATCC 8483 0.37 BACOVA_01203 ribulose-phosphate 3-epimerase 0.36 BACOVA_03303 acetolactate synthase, large subunit, biosynthetic type
Parabacteroides merdae CL09T00C40 0.37 HMPREF1078_RS00800 ribulose-phosphate 3-epimerase 0.37 HMPREF1078_RS16690 biosynthetic-type acetolactate synthase large subunit
Bifidobacterium breve UCC2003 0.36 BBR_RS15800 ribulose-phosphate 3-epimerase 0.39 BBR_RS12350 acetolactate synthase large subunit
Phocaeicola vulgatus CL09T03C04 0.36 HMPREF1058_RS07710 ribulose-phosphate 3-epimerase 0.36 HMPREF1058_RS16820 biosynthetic-type acetolactate synthase large subunit
Bacteroides stercoris CC31F 0.36 HMPREF1181_RS06505 ribulose-phosphate 3-epimerase 0.37 HMPREF1181_RS08330 biosynthetic-type acetolactate synthase large subunit low > 56
Phocaeicola dorei CL03T12C01 0.35 ABI39_RS00225 ribulose-phosphate 3-epimerase 0.36 ABI39_RS12720 biosynthetic-type acetolactate synthase large subunit
Methanococcus maripaludis JJ 0.35 MMJJ_RS08595 ribulose-phosphate 3-epimerase 0.39 MMJJ_RS01650 acetolactate synthase large subunit
Methanococcus maripaludis S2 0.35 MMP_RS05755 ribulose-phosphate 3-epimerase 0.39 MMP_RS03415 acetolactate synthase large subunit

Not shown: 6 genomes with orthologs for BPHYT_RS17380 only; 1 genomes with orthologs for BPHYT_RS06545 only