Conservation of cofitness between AO356_14785 and AO356_21335 in Pseudomonas fluorescens FW300-N2C3

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2C3 1.0 AO356_14785 ABC-ATPase UvrA 1.0 AO356_21335 excinuclease ABC subunit B 0.98 1
Pseudomonas fluorescens FW300-N2E2 1.00 Pf6N2E2_4888 Excinuclease ABC subunit A 1.00 Pf6N2E2_52 Excinuclease ABC subunit B 0.93 1
Pseudomonas sp. RS175 0.99 PFR28_03974 UvrABC system protein A 0.99 PFR28_02837 UvrABC system protein B 0.46 1
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2611 Excinuclease ABC subunit A 0.97 Pf1N1B4_26 Excinuclease ABC subunit B 0.66 3
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_1283 Excinuclease ABC subunit A 0.97 PfGW456L13_3959 Excinuclease ABC subunit B 0.62 1
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_06855 ABC-ATPase UvrA 0.97 AO353_20545 excinuclease ABC subunit B 0.88 1
Pseudomonas simiae WCS417 0.97 PS417_25395 excinuclease ABC subunit A 0.97 PS417_18685 excinuclease ABC subunit B 0.81 1
Pseudomonas fluorescens SBW25 0.97 PFLU_RS27025 excinuclease ABC subunit UvrA 0.97 PFLU_RS20655 excinuclease ABC subunit B low > 109
Pseudomonas fluorescens SBW25-INTG 0.97 PFLU_RS27025 excinuclease ABC subunit UvrA 0.97 PFLU_RS20655 excinuclease ABC subunit B 0.63 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4520 Excinuclease ABC subunit A 0.96 Psyr_1974 Excinuclease ABC subunit B 0.95 1
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4520 Excinuclease ABC subunit A 0.96 Psyr_1974 Excinuclease ABC subunit B 0.89 1
Pseudomonas putida KT2440 0.93 PP_0483 excinuclease (uvrABC system protein A) 0.94 PP_1974 excinuclease UvrABC protein B — —
Pseudomonas sp. S08-1 0.92 OH686_15495 excinuclease ABC subunit A 0.90 OH686_04580 excinuclease ABC subunit B 0.87 1
Pseudomonas stutzeri RCH2 0.90 Psest_3576 excinuclease ABC, A subunit 0.92 Psest_1296 excinuclease ABC, B subunit 0.89 2
Escherichia coli Nissle 1917 0.77 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.71 ECOLIN_RS04150 excinuclease ABC subunit UvrB low > 55
Escherichia coli ECRC99 0.77 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.71 KEDOAH_21530 uvrB excinuclease ABC subunit UvrB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1429 Excinuclease ABC subunit A 0.70 GFF675 Excinuclease ABC subunit B 0.69 5
Escherichia coli ECRC98 0.77 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.71 JDDGAC_10015 uvrB excinuclease ABC subunit UvrB 0.64 46
Escherichia coli ECOR38 0.77 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.70 HEPCGN_01660 uvrB excinuclease ABC subunit UvrB 0.65 18
Rahnella sp. WP5 0.77 EX31_RS11990 excinuclease ABC subunit UvrA 0.73 EX31_RS23720 excinuclease ABC subunit B low > 89
Escherichia coli ECRC101 0.77 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.71 MCAODC_25595 uvrB excinuclease ABC subunit UvrB 0.49 61
Escherichia fergusonii Becca 0.77 EFB2_04533 UvrABC system protein A 0.70 EFB2_03326 UvrABC system protein B low > 86
Escherichia coli ECRC102 0.77 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.71 NIAGMN_04425 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECOR27 0.77 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.71 NOLOHH_22750 uvrB excinuclease ABC subunit UvrB low > 75
Escherichia coli BW25113 0.77 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.71 b0779 uvrB excinuclease ABC subunit B (NCBI) 0.93 1
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_03983 UvrABC system protein A 0.71 OHPLBJKB_02934 UvrABC system protein B low > 73
Escherichia coli ECRC62 0.77 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.71 BNILDI_21020 uvrB excinuclease ABC subunit UvrB 0.79 2
Escherichia coli ECRC100 0.77 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.71 OKFHMN_06380 uvrB excinuclease ABC subunit UvrB low > 80
Escherichia coli BL21 0.77 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.71 ECD_00746 exision nuclease of nucleotide excision repair, DNA damage recognition component 0.84 2
Dickeya dadantii 3937 0.77 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.72 DDA3937_RS08530 excinuclease ABC subunit B 0.73 2
Klebsiella michiganensis M5al 0.77 BWI76_RS01950 excinuclease ABC subunit A 0.71 BWI76_RS08785 excinuclease ABC subunit B 0.71 1
Dickeya dianthicola 67-19 0.77 HGI48_RS17610 excinuclease ABC subunit UvrA 0.72 HGI48_RS08695 excinuclease ABC subunit B low > 71
Dickeya dianthicola ME23 0.77 DZA65_RS18735 excinuclease ABC subunit UvrA 0.72 DZA65_RS08990 excinuclease ABC subunit B low > 75
Enterobacter sp. TBS_079 0.77 MPMX20_00276 UvrABC system protein A 0.70 MPMX20_01408 UvrABC system protein B 0.78 1
Marinobacter adhaerens HP15 0.77 HP15_406 excinuclease ABC, ATPase subunit (A) 0.77 HP15_1372 excinuclease ABC subunit B 0.93 1
Pectobacterium carotovorum WPP14 0.76 HER17_RS03550 excinuclease ABC subunit UvrA 0.73 HER17_RS13420 excinuclease ABC subunit B low > 75
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.72 B158DRAFT_2341 Excinuclease ABC subunit B 0.99 1
Alteromonas macleodii MIT1002 0.76 MIT1002_00179 Excinuclease ABC subunit A 0.70 MIT1002_01261 Excinuclease ABC subunit B low > 70
Enterobacter asburiae PDN3 0.76 EX28DRAFT_4246 excinuclease ABC, A subunit 0.71 EX28DRAFT_2211 Excinuclease ABC subunit B 0.83 4
Serratia liquefaciens MT49 0.76 IAI46_22905 excinuclease ABC subunit UvrA 0.74 IAI46_06550 excinuclease ABC subunit B 0.64 2
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_02080 UvrABC system protein A 0.74 CSW01_05185 excinuclease ABC subunit UvrB 0.55 4
Pantoea sp. MT58 0.76 IAI47_17815 excinuclease ABC subunit UvrA 0.71 IAI47_13505 excinuclease ABC subunit B 0.74 11
Shewanella amazonensis SB2B 0.75 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.71 Sama_1828 excinuclease ABC subunit B (RefSeq) 0.84 1
Shewanella oneidensis MR-1 0.75 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.72 SO2506 uvrB excinuclease ABC, B subunit (NCBI ptt file) 0.92 1
Shewanella sp. ANA-3 0.75 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.71 Shewana3_2166 excinuclease ABC subunit B (RefSeq) 0.75 1
Erwinia tracheiphila SCR3 0.75 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.73 LU632_RS09160 uvrB excinuclease ABC subunit B low > 74
Shewanella loihica PV-4 0.74 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.72 Shew_2064 excinuclease ABC subunit B (RefSeq) 0.94 2
Dechlorosoma suillum PS 0.73 Dsui_1622 excinuclease ABC, A subunit 0.70 Dsui_2434 excinuclease ABC, B subunit 0.90 7
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.72 Xcc-8004.2034.1 Excinuclease ABC subunit B 0.83 1
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.71 ABZR86_RS09750 excinuclease ABC subunit UvrB 0.99 1
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.70 OKGIIK_03100 uvrB excinuclease ABC subunit UvrB low > 52
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA 0.70 LRK54_RS14235 excinuclease ABC subunit UvrB 0.71 1
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA 0.70 LRK55_RS13955 excinuclease ABC subunit UvrB low > 63
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.69 ABZR87_RS09940 excinuclease ABC subunit UvrB 0.72 7
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS19810 excinuclease ABC subunit A 0.66 HSERO_RS15840 excinuclease ABC subunit B 0.89 1
Ralstonia solanacearum GMI1000 0.70 RS_RS02080 excinuclease ABC subunit UvrA 0.68 RS_RS05005 UvrABC system protein B low > 80
Ralstonia solanacearum PSI07 0.70 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.68 RPSI07_RS19240 excinuclease ABC subunit UvrB low > 81
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.68 RALBFv3_RS14225 excinuclease ABC subunit UvrB low > 76
Ralstonia solanacearum UW163 0.70 UW163_RS02345 excinuclease ABC subunit UvrA 0.68 UW163_RS11690 excinuclease ABC subunit UvrB — —
Acinetobacter radioresistens SK82 0.69 MPMX26_02892 UvrABC system protein A 0.69 MPMX26_02142 UvrABC system protein B 0.87 1
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS02145 excinuclease ABC subunit A 0.69 RR42_RS05995 excinuclease ABC subunit B 0.92 1
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_01913 Excinuclease ABC subunit A 0.68 H281DRAFT_04973 Excinuclease ABC subunit B low > 103
Paraburkholderia graminis OAS925 0.69 ABIE53_000732 excinuclease ABC subunit A 0.68 ABIE53_001645 excinuclease ABC subunit B 0.36 78
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS01825 excinuclease ABC subunit UvrA 0.67 QEN71_RS23870 excinuclease ABC subunit UvrB low > 153
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS02970 excinuclease ABC subunit A 0.68 BPHYT_RS06905 excinuclease ABC subunit B low > 109
Variovorax sp. SCN45 0.66 GFF4944 Excinuclease ABC subunit A 0.66 GFF945 Excinuclease ABC subunit B 0.80 19
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF2755 Excinuclease ABC subunit A 0.66 GFF4962 Excinuclease ABC subunit B low > 90
Variovorax sp. OAS795 0.66 ABID97_RS04340 excinuclease ABC subunit UvrA 0.66 ABID97_RS13995 excinuclease ABC subunit UvrB 0.83 1
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4387 Excinuclease ABC subunit A 0.66 Ac3H11_4114 Excinuclease ABC subunit B 0.47 6
Rhodospirillum rubrum S1H 0.62 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.58 Rru_A1133 Excinuclease ABC, B subunit (NCBI) low > 58
Castellaniella sp019104865 MT123 0.62 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.67 ABCV34_RS05110 excinuclease ABC subunit UvrB low > 48
Brevundimonas sp. GW460-12-10-14-LB2 0.61 A4249_RS08575 excinuclease ABC subunit UvrA 0.60 A4249_RS00555 excinuclease ABC subunit UvrB low > 48
Azospirillum sp. SherDot2 0.61 MPMX19_01152 UvrABC system protein A 0.60 MPMX19_01038 UvrABC system protein B 0.80 1
Dinoroseobacter shibae DFL-12 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.59 Dshi_2192 excinuclease ABC, B subunit (RefSeq) 0.91 2
Caulobacter crescentus NA1000 0.60 CCNA_02673 excinuclease ABC subunit A 0.61 CCNA_03076 excinuclease ABC subunit B 0.90 1
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02673 excinuclease ABC subunit A 0.61 CCNA_03076 excinuclease ABC subunit B low > 67
Azospirillum brasilense Sp245 0.60 AZOBR_RS15370 excinuclease ABC subunit A 0.62 AZOBR_RS16420 excinuclease ABC subunit B 0.80 1
Magnetospirillum magneticum AMB-1 0.60 AMB_RS12410 excinuclease ABC subunit UvrA 0.60 AMB_RS19255 excinuclease ABC subunit UvrB 0.81 25
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_0674 excinuclease ABC, A subunit 0.58 Ga0059261_3779 Excinuclease ABC subunit B 0.96 1
Phaeobacter inhibens DSM 17395 0.58 PGA1_c17370 uvrABC system protein A 0.59 PGA1_c26160 uvrABC system protein B 0.91 1
Mycobacterium tuberculosis H37Rv 0.55 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA 0.55 Rv1633 Probable excinuclease ABC (subunit B-helicase) UvrB 0.64 1
Bifidobacterium breve UCC2003 0.54 BBR_RS15510 excinuclease ABC subunit UvrA 0.52 BBR_RS14285 excinuclease ABC subunit UvrB 0.85 2
Fusobacterium nucleatum SB010 0.54 HUW76_06660 excinuclease ABC subunit UvrA 0.55 HUW76_02625 excinuclease ABC subunit UvrB 0.97 2
Methanococcus maripaludis JJ 0.54 MMJJ_RS01235 excinuclease ABC subunit UvrA 0.52 MMJJ_RS01245 excinuclease ABC subunit UvrB low > 28
Synechococcus elongatus PCC 7942 0.54 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.59 Synpcc7942_0563 uvrB excinuclease ABC subunit B 0.87 1
Methanococcus maripaludis S2 0.53 MMP_RS03815 excinuclease ABC subunit UvrA 0.51 MMP_RS03805 excinuclease ABC subunit UvrB low > 25
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_1138 excinuclease ABC, A subunit 0.55 Echvi_1215 excinuclease ABC, B subunit 0.96 2
Bacteroides ovatus ATCC 8483 0.51 BACOVA_03703 excinuclease ABC, A subunit 0.52 BACOVA_03714 excinuclease ABC, B subunit 0.38 83
Bacteroides thetaiotaomicron VPI-5482 0.50 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.52 BT0570 excinuclease ABC subunit B (NCBI ptt file) 0.81 2
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS15330 excinuclease ABC subunit UvrA 0.52 ABI39_RS15300 excinuclease ABC subunit UvrB 0.82 2
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.56 HMPREF1078_RS15855 excinuclease ABC subunit UvrB 0.84 2
Phocaeicola vulgatus CL09T03C04 0.50 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.52 HMPREF1058_RS01765 excinuclease ABC subunit UvrB 0.94 2
Pontibacter actiniarum KMM 6156, DSM 19842 0.50 CA264_18100 ABC-ATPase UvrA 0.54 CA264_19110 excinuclease ABC subunit B 0.89 2
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.52 HMPREF1181_RS15225 excinuclease ABC subunit UvrB low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.48 CA265_RS25080 excinuclease ABC subunit A 0.57 CA265_RS19430 excinuclease ABC subunit B 0.94 2
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.56 ABZR88_RS18110 excinuclease ABC subunit UvrB low > 71
Desulfovibrio vulgaris Hildenborough JW710 0.47 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) 0.59 DVU1605 uvrB excinuclease ABC, B subunit (TIGR) 0.68 2
Desulfovibrio vulgaris Miyazaki F 0.46 DvMF_3050 excinuclease ABC, A subunit (RefSeq) 0.59 DvMF_0454 excinuclease ABC subunit B (RefSeq) 0.82 2

Not shown: 5 genomes with orthologs for AO356_14785 only; 1 genomes with orthologs for AO356_21335 only