Conservation of cofitness between AO356_14785 and AO356_15680 in Pseudomonas fluorescens FW300-N2C3

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2C3 1.0 AO356_14785 ABC-ATPase UvrA 1.0 AO356_15680 DNA repair protein RadA 0.74 6
Pseudomonas fluorescens FW300-N2E2 1.00 Pf6N2E2_4888 Excinuclease ABC subunit A 1.00 Pf6N2E2_5076 DNA repair protein RadA 0.44 15
Pseudomonas sp. RS175 0.99 PFR28_03974 UvrABC system protein A 0.99 PFR28_03792 DNA repair protein RadA low > 88
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2611 Excinuclease ABC subunit A 0.98 Pf1N1B4_2768 DNA repair protein RadA 0.47 9
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_1283 Excinuclease ABC subunit A 0.98 PfGW456L13_1442 DNA repair protein RadA 0.30 47
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_06855 ABC-ATPase UvrA 0.99 AO353_13980 DNA repair protein RadA 0.65 6
Pseudomonas simiae WCS417 0.97 PS417_25395 excinuclease ABC subunit A 0.98 PS417_24305 DNA repair protein RadA 0.56 7
Pseudomonas fluorescens SBW25-INTG 0.97 PFLU_RS27025 excinuclease ABC subunit UvrA 0.98 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas fluorescens SBW25 0.97 PFLU_RS27025 excinuclease ABC subunit UvrA 0.98 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4520 Excinuclease ABC subunit A 0.97 Psyr_4275 DNA replication and repair protein RadA low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4520 Excinuclease ABC subunit A 0.97 Psyr_4275 DNA replication and repair protein RadA low > 86
Pseudomonas putida KT2440 0.93 PP_0483 excinuclease (uvrABC system protein A) 0.95 PP_4644 DNA repair enzyme — —
Pseudomonas sp. S08-1 0.92 OH686_15495 excinuclease ABC subunit A 0.94 OH686_16185 DNA repair protein RadA low > 80
Pseudomonas stutzeri RCH2 0.90 Psest_3576 excinuclease ABC, A subunit 0.92 Psest_3401 DNA repair protein RadA 0.62 7
Escherichia coli Nissle 1917 0.77 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.65 ECOLIN_RS25190 DNA repair protein RadA low > 55
Escherichia coli ECRC101 0.77 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.65 MCAODC_01710 radA DNA repair protein RadA low > 87
Rahnella sp. WP5 0.77 EX31_RS11990 excinuclease ABC subunit UvrA 0.63 EX31_RS04030 DNA repair protein RadA low > 89
Escherichia coli ECRC98 0.77 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.65 JDDGAC_14790 radA DNA repair protein RadA low > 86
Escherichia coli ECOR38 0.77 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.64 HEPCGN_09195 radA DNA repair protein RadA low > 87
Escherichia coli ECRC102 0.77 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.65 NIAGMN_09045 radA DNA repair protein RadA — —
Escherichia fergusonii Becca 0.77 EFB2_04533 UvrABC system protein A 0.65 EFB2_04057 DNA repair protein RadA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1429 Excinuclease ABC subunit A 0.63 GFF1057 DNA repair protein RadA low > 78
Escherichia coli ECRC99 0.77 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.65 KEDOAH_16960 radA DNA repair protein RadA — —
Escherichia coli ECOR27 0.77 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.65 NOLOHH_03520 radA DNA repair protein RadA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_03983 UvrABC system protein A 0.65 OHPLBJKB_03672 DNA repair protein RadA low > 73
Escherichia coli BW25113 0.77 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.65 b4389 radA predicted repair protein (NCBI) 0.45 9
Escherichia coli ECRC62 0.77 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.65 BNILDI_08075 radA DNA repair protein RadA low > 75
Escherichia coli ECRC100 0.77 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.65 OKFHMN_11195 radA DNA repair protein RadA low > 80
Escherichia coli BL21 0.77 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.65 ECD_04265 DNA repair protein 0.81 6
Dickeya dadantii 3937 0.77 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.61 DDA3937_RS02420 DNA repair protein RadA low > 74
Klebsiella michiganensis M5al 0.77 BWI76_RS01950 excinuclease ABC subunit A 0.64 BWI76_RS04165 DNA repair protein RadA low > 92
Dickeya dianthicola 67-19 0.77 HGI48_RS17610 excinuclease ABC subunit UvrA 0.61 HGI48_RS02380 DNA repair protein RadA low > 71
Dickeya dianthicola ME23 0.77 DZA65_RS18735 excinuclease ABC subunit UvrA 0.61 DZA65_RS02485 DNA repair protein RadA low > 75
Marinobacter adhaerens HP15 0.77 HP15_406 excinuclease ABC, ATPase subunit (A) 0.63 HP15_487 DNA repair protein RadA 0.87 3
Enterobacter sp. TBS_079 0.77 MPMX20_00276 UvrABC system protein A 0.64 MPMX20_00694 DNA repair protein RadA low > 85
Pectobacterium carotovorum WPP14 0.76 HER17_RS03550 excinuclease ABC subunit UvrA 0.62 HER17_RS19085 DNA repair protein RadA low > 75
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.67 B158DRAFT_0877 DNA replication and repair protein RadA 0.52 35
Alteromonas macleodii MIT1002 0.76 MIT1002_00179 Excinuclease ABC subunit A 0.67 MIT1002_02706 Lon protease 2 low > 70
Enterobacter asburiae PDN3 0.76 EX28DRAFT_4246 excinuclease ABC, A subunit 0.64 EX28DRAFT_3597 DNA repair protein RadA low > 76
Serratia liquefaciens MT49 0.76 IAI46_22905 excinuclease ABC subunit UvrA 0.64 IAI46_02945 DNA repair protein RadA 0.43 33
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_02080 UvrABC system protein A 0.62 CSW01_11870 DNA repair protein RadA 0.36 47
Pantoea sp. MT58 0.76 IAI47_17815 excinuclease ABC subunit UvrA 0.64 IAI47_16345 DNA repair protein RadA low > 76
Shewanella amazonensis SB2B 0.75 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.61 Sama_0981 DNA repair protein RadA (RefSeq) 0.65 7
Shewanella oneidensis MR-1 0.75 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.65 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.55 7
Shewanella sp. ANA-3 0.75 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.65 Shewana3_1049 DNA repair protein RadA (RefSeq) 0.52 10
Erwinia tracheiphila SCR3 0.75 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.63 LU632_RS02550 radA DNA repair protein RadA low > 74
Shewanella loihica PV-4 0.74 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.39 Shew_2807 DNA repair protein RadA (RefSeq) 0.94 3
Dechlorosoma suillum PS 0.73 Dsui_1622 excinuclease ABC, A subunit 0.58 Dsui_2413 DNA repair protein RadA 0.54 28
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.65 Xcc-8004.3812.1 DNA repair protein RadA low > 74
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.63 ABZR86_RS08845 DNA repair protein RadA 0.77 14
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.64 OKGIIK_09580 radA DNA repair protein RadA low > 52
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA 0.64 LRK55_RS02280 DNA repair protein RadA low > 63
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA 0.64 LRK54_RS02525 DNA repair protein RadA low > 59
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.59 ABZR87_RS11670 DNA repair protein RadA low > 80
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS19810 excinuclease ABC subunit A 0.59 HSERO_RS10745 DNA repair protein RadA 0.57 11
Ralstonia solanacearum PSI07 0.70 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.58 RPSI07_RS17270 DNA repair protein RadA low > 81
Ralstonia solanacearum GMI1000 0.70 RS_RS02080 excinuclease ABC subunit UvrA 0.58 RS_RS06880 DNA repair protein RadA low > 80
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.59 RALBFv3_RS00210 DNA repair protein RadA low > 76
Ralstonia solanacearum UW163 0.70 UW163_RS02345 excinuclease ABC subunit UvrA 0.59 UW163_RS13540 DNA repair protein RadA — —
Acinetobacter radioresistens SK82 0.69 MPMX26_02892 UvrABC system protein A 0.67 MPMX26_02235 DNA repair protein RadA low > 36
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS02145 excinuclease ABC subunit A 0.59 RR42_RS12030 DNA repair protein RadA — —
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_01913 Excinuclease ABC subunit A 0.60 H281DRAFT_00590 DNA replication and repair protein RadA low > 103
Paraburkholderia graminis OAS925 0.69 ABIE53_000732 excinuclease ABC subunit A 0.60 ABIE53_002526 DNA repair protein RadA/Sms low > 113
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS02970 excinuclease ABC subunit A 0.59 BPHYT_RS12235 DNA repair protein RadA low > 109
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS01825 excinuclease ABC subunit UvrA 0.60 QEN71_RS06320 DNA repair protein RadA low > 153
Variovorax sp. SCN45 0.66 GFF4944 Excinuclease ABC subunit A 0.58 GFF5087 DNA repair protein RadA low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF2755 Excinuclease ABC subunit A 0.55 GFF1833 DNA repair protein RadA low > 90
Variovorax sp. OAS795 0.66 ABID97_RS04340 excinuclease ABC subunit UvrA 0.59 ABID97_RS03770 DNA repair protein RadA low > 91
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4387 Excinuclease ABC subunit A 0.57 Ac3H11_3371 DNA repair protein RadA 0.43 13
Rhodospirillum rubrum S1H 0.62 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.42 Rru_A0406 DNA repair protein RadA (NCBI) 0.68 2
Castellaniella sp019104865 MT123 0.62 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.57 ABCV34_RS02345 DNA repair protein RadA low > 48
Brevundimonas sp. GW460-12-10-14-LB2 0.61 A4249_RS08575 excinuclease ABC subunit UvrA 0.41 A4249_RS03745 DNA repair protein RadA low > 48
Azospirillum sp. SherDot2 0.61 MPMX19_01152 UvrABC system protein A 0.45 MPMX19_00904 DNA repair protein RadA 0.51 56
Rhodopseudomonas palustris CGA009 0.61 TX73_014580 excinuclease ABC subunit UvrA 0.44 TX73_015980 DNA repair protein RadA low > 86
Dinoroseobacter shibae DFL-12 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.46 Dshi_2129 DNA repair protein RadA (RefSeq) 0.72 9
Caulobacter crescentus NA1000 0.60 CCNA_02673 excinuclease ABC subunit A 0.41 CCNA_01732 DNA repair protein RadA 0.77 10
Azospirillum brasilense Sp245 0.60 AZOBR_RS15370 excinuclease ABC subunit A 0.46 AZOBR_RS08320 DNA repair protein RadA 0.79 2
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02673 excinuclease ABC subunit A 0.41 CCNA_01732 DNA repair protein RadA low > 67
Magnetospirillum magneticum AMB-1 0.60 AMB_RS12410 excinuclease ABC subunit UvrA 0.46 AMB_RS10555 DNA repair protein RadA low > 64
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_0674 excinuclease ABC, A subunit 0.42 Ga0059261_0751 DNA repair protein RadA 0.36 17
Agrobacterium fabrum C58 0.59 Atu1513 ABC excinuclease subunit A 0.45 Atu1077 DNA repair protein 0.44 19
Rhizobium sp. OAE497 0.59 ABIE40_RS09360 excinuclease ABC subunit UvrA 0.45 ABIE40_RS06280 DNA repair protein RadA low > 107
Bosea sp. OAE506 0.59 ABIE41_RS15100 excinuclease ABC subunit UvrA 0.43 ABIE41_RS17800 DNA repair protein RadA 0.51 18
Sinorhizobium meliloti 1021 0.59 SMc01235 excinuclease ABC subunit A 0.45 SMc00556 DNA repair protein RadA 0.68 7
Phaeobacter inhibens DSM 17395 0.58 PGA1_c17370 uvrABC system protein A 0.45 PGA1_c10840 DNA repair protein RadA 0.53 10
Mycobacterium tuberculosis H37Rv 0.55 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA 0.34 Rv3585 DNA repair protein RadA (DNA repair protein SMS) low > 58
Bifidobacterium breve UCC2003 0.54 BBR_RS15510 excinuclease ABC subunit UvrA 0.38 BBR_RS18740 DNA repair protein RadA low > 34
Fusobacterium nucleatum SB010 0.54 HUW76_06660 excinuclease ABC subunit UvrA 0.35 HUW76_02270 DNA repair protein RadA low > 35
Synechococcus elongatus PCC 7942 0.54 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.42 Synpcc7942_1452 radA DNA repair protein RadA 0.66 3
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_1138 excinuclease ABC, A subunit 0.44 Echvi_1031 DNA repair protein RadA 0.48 21
Bacteroides ovatus ATCC 8483 0.51 BACOVA_03703 excinuclease ABC, A subunit 0.43 BACOVA_03019 DNA repair protein RadA low > 94
Bacteroides thetaiotaomicron VPI-5482 0.50 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.43 BT2406 putative DNA repair protein (NCBI ptt file) 0.53 76
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS15330 excinuclease ABC subunit UvrA 0.43 ABI39_RS10420 DNA repair protein RadA low > 72
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.44 HMPREF1078_RS08395 DNA repair protein RadA low > 61
Phocaeicola vulgatus CL09T03C04 0.50 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.43 HMPREF1058_RS14715 DNA repair protein RadA low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.50 CA264_18100 ABC-ATPase UvrA 0.42 CA264_17125 DNA repair protein RadA low > 74
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.44 HMPREF1181_RS00075 DNA repair protein RadA low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.48 CA265_RS25080 excinuclease ABC subunit A 0.43 CA265_RS22660 DNA repair protein RadA 0.38 28
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.43 ABZR88_RS20495 DNA repair protein RadA low > 71
Desulfovibrio vulgaris Hildenborough JW710 0.47 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) 0.35 DVU1590 radA DNA repair protein RadA (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.46 DvMF_3050 excinuclease ABC, A subunit (RefSeq) 0.36 DvMF_0471 DNA repair protein RadA (RefSeq) low > 51

Not shown: 2 genomes with orthologs for AO356_14785 only; 1 genomes with orthologs for AO356_15680 only