Conservation of cofitness between AO356_14785 and AO356_02495 in Pseudomonas fluorescens FW300-N2C3

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2C3 1.0 AO356_14785 ABC-ATPase UvrA 1.0 AO356_02495 recombination protein RecR 0.72 7
Pseudomonas fluorescens FW300-N2E2 1.00 Pf6N2E2_4888 Excinuclease ABC subunit A 1.00 Pf6N2E2_2325 Recombination protein RecR 0.71 5
Pseudomonas sp. RS175 0.99 PFR28_03974 UvrABC system protein A 0.98 PFR28_01077 Recombination protein RecR 0.29 61
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2611 Excinuclease ABC subunit A 0.98 Pf1N1B4_3864 Recombination protein RecR 0.67 2
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_1283 Excinuclease ABC subunit A 0.97 PfGW456L13_4074 Recombination protein RecR 0.57 4
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_06855 ABC-ATPase UvrA 0.98 AO353_00675 recombination protein RecR 0.56 11
Pseudomonas simiae WCS417 0.97 PS417_25395 excinuclease ABC subunit A 0.95 PS417_20800 recombination protein RecR 0.62 4
Pseudomonas fluorescens SBW25 0.97 PFLU_RS27025 excinuclease ABC subunit UvrA 0.96 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas fluorescens SBW25-INTG 0.97 PFLU_RS27025 excinuclease ABC subunit UvrA 0.96 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4520 Excinuclease ABC subunit A 0.93 Psyr_3396 DNA replication and repair protein RecR 0.74 4
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4520 Excinuclease ABC subunit A 0.93 Psyr_3396 DNA replication and repair protein RecR 0.83 4
Pseudomonas putida KT2440 0.93 PP_0483 excinuclease (uvrABC system protein A) 0.92 PP_4267 Recombination protein RecR — —
Pseudomonas sp. S08-1 0.92 OH686_15495 excinuclease ABC subunit A 0.85 OH686_02385 recombination protein RecR low > 80
Pseudomonas stutzeri RCH2 0.90 Psest_3576 excinuclease ABC, A subunit 0.87 Psest_2545 recombination protein RecR 0.71 6
Escherichia coli Nissle 1917 0.77 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.63 ECOLIN_RS02805 recombination mediator RecR — —
Escherichia coli ECRC99 0.77 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.63 KEDOAH_19810 recR recombination mediator RecR — —
Escherichia coli ECRC98 0.77 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.63 JDDGAC_11805 recR recombination mediator RecR low > 86
Escherichia coli ECOR38 0.77 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.63 HEPCGN_06770 recR recombination mediator RecR low > 87
Escherichia coli ECRC102 0.77 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.63 NIAGMN_06210 recR recombination mediator RecR — —
Escherichia fergusonii Becca 0.77 EFB2_04533 UvrABC system protein A 0.63 EFB2_03586 Recombination protein RecR low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1429 Excinuclease ABC subunit A 0.63 GFF4390 Recombination protein RecR 0.73 2
Escherichia coli ECRC101 0.77 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.63 MCAODC_27380 recR recombination mediator RecR low > 87
Rahnella sp. WP5 0.77 EX31_RS11990 excinuclease ABC subunit UvrA 0.63 EX31_RS22525 recombination protein RecR low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_03983 UvrABC system protein A 0.63 OHPLBJKB_03202 Recombination protein RecR low > 73
Escherichia coli ECOR27 0.77 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.63 NOLOHH_01085 recR recombination mediator RecR low > 75
Escherichia coli BW25113 0.77 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.63 b0472 recR recombination protein RecR (NCBI) 0.76 4
Escherichia coli ECRC62 0.77 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.63 BNILDI_22505 recR recombination mediator RecR low > 75
Escherichia coli ECRC100 0.77 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.63 OKFHMN_08155 recR recombination mediator RecR low > 80
Escherichia coli BL21 0.77 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.63 ECD_00423 gap repair protein 0.63 20
Dickeya dadantii 3937 0.77 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.63 DDA3937_RS05790 recombination protein RecR low > 74
Dickeya dianthicola ME23 0.77 DZA65_RS18735 excinuclease ABC subunit UvrA 0.62 DZA65_RS06165 recombination protein RecR low > 75
Dickeya dianthicola 67-19 0.77 HGI48_RS17610 excinuclease ABC subunit UvrA 0.62 HGI48_RS05840 recombination protein RecR — —
Klebsiella michiganensis M5al 0.77 BWI76_RS01950 excinuclease ABC subunit A 0.63 BWI76_RS06830 recombination protein RecR 0.19 91
Enterobacter sp. TBS_079 0.77 MPMX20_00276 UvrABC system protein A 0.64 MPMX20_01074 Recombination protein RecR 0.34 61
Marinobacter adhaerens HP15 0.77 HP15_406 excinuclease ABC, ATPase subunit (A) 0.62 HP15_1883 recombination protein RecR — —
Pectobacterium carotovorum WPP14 0.76 HER17_RS03550 excinuclease ABC subunit UvrA 0.63 HER17_RS15695 recombination mediator RecR low > 75
Alteromonas macleodii MIT1002 0.76 MIT1002_00179 Excinuclease ABC subunit A 0.62 MIT1002_02649 Recombination protein RecR low > 70
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.61 B158DRAFT_2480 DNA replication and repair protein RecR 0.76 5
Enterobacter asburiae PDN3 0.76 EX28DRAFT_4246 excinuclease ABC, A subunit 0.64 EX28DRAFT_2485 DNA replication and repair protein RecR low > 76
Serratia liquefaciens MT49 0.76 IAI46_22905 excinuclease ABC subunit UvrA 0.64 IAI46_05240 recombination protein RecR 0.50 11
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_02080 UvrABC system protein A 0.59 CSW01_05375 recombination protein RecR low > 62
Pantoea sp. MT58 0.76 IAI47_17815 excinuclease ABC subunit UvrA 0.63 IAI47_14465 recombination protein RecR low > 76
Shewanella amazonensis SB2B 0.75 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.58 Sama_1312 recR recombination protein RecR (RefSeq) 0.64 9
Shewanella oneidensis MR-1 0.75 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.58 SO2015 recR recombination protein RecR (NCBI ptt file) 0.60 3
Shewanella sp. ANA-3 0.75 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.59 Shewana3_2444 recR recombination protein RecR (RefSeq) 0.52 13
Erwinia tracheiphila SCR3 0.75 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.62 LU632_RS18105 recR recombination mediator RecR low > 74
Shewanella loihica PV-4 0.74 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.59 Shew_2233 recombination protein RecR (RefSeq) 0.51 32
Dechlorosoma suillum PS 0.73 Dsui_1622 excinuclease ABC, A subunit 0.53 Dsui_1811 recombination protein RecR 0.94 4
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.52 Xcc-8004.4012.1 Recombination protein RecR low > 74
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.57 ABZR86_RS06235 recombination mediator RecR 0.75 17
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.58 OKGIIK_05655 recR recombination mediator RecR low > 52
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA 0.58 LRK55_RS01020 recombination mediator RecR low > 63
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA 0.58 LRK54_RS01250 recombination mediator RecR low > 59
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.52 ABZR87_RS10810 recombination mediator RecR low > 80
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS19810 excinuclease ABC subunit A 0.50 HSERO_RS18355 recombinase RecR 0.66 4
Ralstonia solanacearum PSI07 0.70 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.50 RPSI07_RS18205 recombination protein RecR low > 81
Ralstonia solanacearum GMI1000 0.70 RS_RS02080 excinuclease ABC subunit UvrA 0.49 RS_RS05980 recombination protein RecR low > 80
Ralstonia solanacearum UW163 0.70 UW163_RS02345 excinuclease ABC subunit UvrA 0.49 UW163_RS12640 recombination protein RecR — —
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.49 RALBFv3_RS15170 recombination protein RecR low > 76
Acinetobacter radioresistens SK82 0.69 MPMX26_02892 UvrABC system protein A 0.53 MPMX26_01643 Recombination protein RecR 0.37 22
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_01913 Excinuclease ABC subunit A 0.49 H281DRAFT_00834 DNA replication and repair protein RecR low > 103
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS02145 excinuclease ABC subunit A 0.51 RR42_RS13270 recombination protein RecR 0.67 7
Paraburkholderia graminis OAS925 0.69 ABIE53_000732 excinuclease ABC subunit A 0.49 ABIE53_002048 recombination protein RecR low > 113
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS01825 excinuclease ABC subunit UvrA 0.48 QEN71_RS22285 recombination mediator RecR low > 153
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS02970 excinuclease ABC subunit A 0.48 BPHYT_RS09070 recombination protein RecR low > 109
Variovorax sp. SCN45 0.66 GFF4944 Excinuclease ABC subunit A 0.51 GFF1110 Recombination protein RecR low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF2755 Excinuclease ABC subunit A 0.48 GFF4253 Recombination protein RecR low > 90
Variovorax sp. OAS795 0.66 ABID97_RS04340 excinuclease ABC subunit UvrA 0.49 ABID97_RS14700 recombination mediator RecR low > 91
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4387 Excinuclease ABC subunit A 0.43 Ac3H11_473 Recombination protein RecR 0.42 16
Rhodospirillum rubrum S1H 0.62 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.40 Rru_A3471 RecR protein (NCBI) — —
Castellaniella sp019104865 MT123 0.62 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.46 ABCV34_RS15480 recombination mediator RecR low > 48
Brevundimonas sp. GW460-12-10-14-LB2 0.61 A4249_RS08575 excinuclease ABC subunit UvrA 0.33 A4249_RS15115 recombination mediator RecR low > 48
Rhodopseudomonas palustris CGA009 0.61 TX73_014580 excinuclease ABC subunit UvrA 0.37 TX73_003195 recombination mediator RecR — —
Azospirillum sp. SherDot2 0.61 MPMX19_01152 UvrABC system protein A 0.38 MPMX19_02195 Recombination protein RecR low > 112
Dinoroseobacter shibae DFL-12 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.35 Dshi_0648 recombination protein RecR (RefSeq) 0.55 18
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02673 excinuclease ABC subunit A 0.38 CCNA_00270 Recombination protein recR low > 67
Caulobacter crescentus NA1000 0.60 CCNA_02673 excinuclease ABC subunit A 0.38 CCNA_00270 Recombination protein recR 0.90 3
Azospirillum brasilense Sp245 0.60 AZOBR_RS15370 excinuclease ABC subunit A 0.40 AZOBR_RS03880 recombinase RecR 0.66 9
Magnetospirillum magneticum AMB-1 0.60 AMB_RS12410 excinuclease ABC subunit UvrA 0.37 AMB_RS20755 recombination protein RecR low > 64
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_0674 excinuclease ABC, A subunit 0.39 Ga0059261_0645 DNA replication and repair protein RecR 0.89 4
Agrobacterium fabrum C58 0.59 Atu1513 ABC excinuclease subunit A 0.38 Atu0093 Recombination protein 0.52 9
Rhizobium sp. OAE497 0.59 ABIE40_RS09360 excinuclease ABC subunit UvrA 0.33 ABIE40_RS00300 recombination mediator RecR low > 107
Bosea sp. OAE506 0.59 ABIE41_RS15100 excinuclease ABC subunit UvrA 0.35 ABIE41_RS04035 recombination mediator RecR — —
Sinorhizobium meliloti 1021 0.59 SMc01235 excinuclease ABC subunit A 0.36 SMc02908 recombination protein RecR 0.67 9
Phaeobacter inhibens DSM 17395 0.58 PGA1_c17370 uvrABC system protein A 0.34 PGA1_c30290 recombination protein RecR 0.73 5
Mycobacterium tuberculosis H37Rv 0.55 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA 0.41 Rv3715c Probable recombination protein RecR low > 58
Bifidobacterium breve UCC2003 0.54 BBR_RS15510 excinuclease ABC subunit UvrA 0.39 BBR_RS10990 recombination protein RecR 0.57 8
Fusobacterium nucleatum SB010 0.54 HUW76_06660 excinuclease ABC subunit UvrA 0.39 HUW76_08785 recombination protein RecR low > 35
Synechococcus elongatus PCC 7942 0.54 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.39 Synpcc7942_1369 recR recombination protein RecR — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_1138 excinuclease ABC, A subunit 0.39 Echvi_1987 recombination protein RecR 0.88 3
Bacteroides thetaiotaomicron VPI-5482 0.50 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.35 BT1081 recombination protein recR (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS15330 excinuclease ABC subunit UvrA 0.34 ABI39_RS14870 recombination protein RecR low > 72
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.36 HMPREF1078_RS07615 recombination mediator RecR low > 61
Phocaeicola vulgatus CL09T03C04 0.50 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.34 HMPREF1058_RS18560 recombination protein RecR 0.68 47
Pontibacter actiniarum KMM 6156, DSM 19842 0.50 CA264_18100 ABC-ATPase UvrA 0.37 CA264_01105 recombination protein RecR low > 74
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.36 HMPREF1181_RS16455 recombination protein RecR low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.48 CA265_RS25080 excinuclease ABC subunit A 0.35 CA265_RS04980 recombination protein RecR 0.83 7
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.37 ABZR88_RS10695 recombination mediator RecR low > 71
Desulfovibrio vulgaris Hildenborough JW710 0.47 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) 0.30 DVU3200 recR recombination protein RecR (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.46 DvMF_3050 excinuclease ABC, A subunit (RefSeq) 0.29 DvMF_2271 recombination protein RecR (RefSeq) 0.67 4

Not shown: 3 genomes with orthologs for AO356_14785 only; 1 genomes with orthologs for AO356_02495 only